Prof Andrew Brass - publications


 

List of publications

2017

  • Glymenaki, M., Singh, G., Brass, A., Warhurst, G., Mcbain, A., Else, K., & Cruickshank, S. (2017). Compositional changes in the gut mucus microbiota precede the onset of colitis-induced inflammation. Inflammatory Bowel Diseases. . Publication link: 0f899f38-d9cc-4e09-a5a9-8e1b16148963

2016

  • Poolman, T., Williamson, A., Wang, Z., Clark, N. R., Ma’ayan, A., Whetton, A., ... Ray, D. (2016). Glucocorticoid receptor isoforms direct distinct mitochondrial programs to regulate ATP production. Scientific Reports. DOI: 10.1038/srep26419. Publication link: 9d4f2461-d34c-4271-97e0-bbe687611e80
  • Hoyle, D. C., & Brass, A. (2016). Statistical mechanics of ontology based annotations. Physica A: Statistical Mechanics and its Applications, 442, 284-299. . Publication link: 41a7e1f0-c408-44e5-878b-6a12b6170e58
  • Eleftheriou, I., Embury, S., & Brass, A. (2016). Data Journey Modelling: Predicting Risk for IT Developments. In Proceedings of the 9th IFIP WG 8.1 Working Conference on The Practice of Enterprise Modeling (PoEM) . DOI: 10.1007/978-3-319-48393-1_6. Publication link: f00fe1e0-f8f0-4c02-8a20-84d76609d88e

2015

2014

2013

  • Van den Hove, D. L. A., Kenis, G., Brass, A., Opstelten, R., Rutten, B. P. F., Bruschettini, M., ... Prickaerts, J. (2013). Vulnerability versus resilience to prenatal stress in male and female rats; Implications from gene expression profiles in the hippocampus and frontal cortex. European Neuropsychopharmacology, 23(10), 1226-1246. DOI: 10.1016/j.euroneuro.2012.09.011. Publication link: ceef7175-5107-44b9-9265-12163f19cc09 | PubMed:23199416
  • Levison, S. E., Fisher, P., Hankinson, J., Zeef, L., Eyre, S., Ollier, W. E., ... Pennock, J. L. (2013). Genetic analysis of the Trichuris muris-induced model of colitis reveals QTL overlap and a novel gene cluster for establishing colonic inflammation. BMC Genomics, 14(1), [127]. DOI: 10.1186/1471-2164-14-127. Publication link: 01cb1bd5-65c2-4bde-9f1e-6d4fdc3131cd | PubMed:23442222
  • Kalankesh, L., Weatherall, J., Ba-Dhfari, T., Buchan, I., & Brass, A. (2013). Taming EHR data: Using semantic similarity to reduce dimensionality. In Studies in Health Technology and Informatics|Stud. Health Technol. Informatics. (Vol. 192, pp. 52-56). DOI: 10.3233/978-1-61499-289-9-52. Publication link: 53424f71-8273-4950-8e7c-15c382eb097c
  • Duck, G., Nenadic, G., Brass, A., Robertson, D. L., & Stevens, R. (2013). BioNerDS: Exploring bioinformatics' database and software use through literature mining. BMC Bioinformatics, 14(1), [194]. DOI: 10.1186/1471-2105-14-194. Publication link: 705055ba-b73f-4ac1-b434-c91d5dec5042 | PubMed:23768135
  • Kalankesh, L., Weatherall, J., Ba-Dhfari, T., Buchan, I., & Brass, A. (2013). Taming EHR data: Using semantic similarity to reduce dimensionality. Studies in health technology and informatics, 192(1-2), 52-56. DOI: 10.3233/978-1-61499-289-9-52. Publication link: 92ca581b-6977-4c35-88bd-21b99128bc92 | PubMed:23920514
  • Jackman, P., Gray, A. J. G., Brass, A., Stevens, R., Shi, M., Scuffell, D., ... Grieve, B. (2013). Processing online crop disease warning information via sensor networks using ISA ontologies. Agricultural Engineering International: CIGR Journal, 15(3), 243-251. . Publication link: 8d4f11be-f4b2-4622-b6ac-c803e59bc0fb

2012

2011

  • McMaster, A., Jangani, M., Sommer, P., Han, N., Brass, A., Beesley, S., ... Ray, D. W. (2011). Ultradian cortisol pulsatility encodes a distinct, biologically important signal. PLoS ONE, 6(1), [e15766]. DOI: 10.1371/journal.pone.0015766. Publication link: dae72e19-eba3-4018-ade6-a32ffe56dee5 | PubMed:21267416
  • Noyes, H., Brass, A., Obara, I., Anderson, S., Archibald, A. L., Bradley, D. G., ... Kemp, S. J. (2011). Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection. Proceedings of the National Academy of Sciences of the United States of America, 108(22), 9304-9309. DOI: 10.1073/pnas.1013486108. Publication link: 6d172bc6-a40e-427d-8f87-a3ca28300911 | PubMed:21593421
  • Fabre, V., Massart, R., Rachalski, A., Jennings, K., Brass, A., Sharp, T., ... Hamon, M. (2011). Differential gene expression in mutant mice overexpressing or deficient in the serotonin transporter: A focus on urocortin 1. European Neuropsychopharmacology, 21(1), 33-44. DOI: 10.1016/j.euroneuro.2010.10.004. Publication link: 64f0cbf5-96a9-4074-9b6c-9da022c36e42 | PubMed:21075611

2010

2009

  • Morris, D. G., Waters, S. M., McCarthy, S. D., Patton, J., Earley, B., Fitzpatrick, R., ... Wathes, D. C. (2009). Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: Repercussions for innate and adaptive immunity. Physiological Genomics, 39(1), 28-37. DOI: 10.1152/physiolgenomics.90394.2008. Publication link: e5afa298-5654-4a68-9347-7060f082ce53 | PubMed:19567785
  • Li, W., Gracey, A. Y., Mello, L. V., Brass, A., & Cossins, A. R. (2009). ExprAlign - the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles. BMC Genomics, 10, [560]. DOI: 10.1186/1471-2164-10-560. Publication link: 2809c5a9-8ac5-45f8-a35f-655b6240a3d5 | PubMed:19939286
  • Stevens, R., Fisher, P., Zhao, J., Goble, C., & Brass, A. (2009). Building Workflows that Traverse the Bioinformatics Data Landscape. In Data Mining Techniques in Grid Computing Environments|Data Min. Tech. in Grid Computing Environments. (pp. 141-163). John Wiley & Sons . DOI: 10.1002/9780470699904.ch9. Publication link: 3048fa58-d5e2-40a1-aba2-093a7acb0b46
  • Rathkolb, B., Noyes, H. A., Brass, A., Dark, P., Fuchs, H., Gailus-Durner, V., ... Agaba, M. (2009). Clinical chemistry of congenic mice with quantitative trait loci for predicted responses to Trypanosoma congolense infection. Infection and Immunity, 77(9), 3948-3957. DOI: 10.1128/IAI.00658-09. Publication link: 666b136d-6a58-416c-9922-536b2ce80287 | PubMed:19596769
  • Noyes, H. A., Alimohammadian, M. H., Agaba, M., Brass, A., Fuchs, H., Gailus-Durner, V., ... Naessens, J. (2009). Mechanisms controlling anaemia in Trypanosoma congolense infected mice. PLoS ONE, 4(4), [e5170]. DOI: 10.1371/journal.pone.0005170. Publication link: 67f720d9-b3f9-494e-b015-7ef2afe99556 | PubMed:19365556
  • Fisher, P., Noyes, H., Kemp, S., Stevens, R., & Brass, A. (2009). A systematic strategy for the discovery of candidate genes responsible for phenotypic variation.Methods in Molecular Biology, 573, 329-345. DOI: 10.1007/978-1-60761-247-6_18. Publication link: 858ac390-9020-4a21-b9f0-51e562bf4703 | PubMed:19763936
  • Fisher, P., Noyes, H., Kemp, S., Stevens, R., & Brass, A. (2009). A systematic strategy for the discovery of candidate genes responsible for phenotypic variation. In Methods in molecular biology (Clifton, N.J.)|Methods Mol. Biol.. (Vol. 573, pp. 329-345). ({Methods in Molecular Biology{\texttrademark}}). Humana Press. DOI: 10.1007/978-1-60761-247-6_18.. Publication link: 808ab777-4d8f-48bd-9024-16d6110d396f

2008

  • Rennie, C., Hulme, H., Fisher, P., Hall, L., Agaba, M., Noyes, H. A., ... Brass, A. (2008). A systematic, data-driven approach to the combined analysis of microarray and QTL data. Developments in Biologicals, 132, 293-299. DOI: 10.1159/000317174. Publication link: 2f8d29f6-ee8d-45b4-9339-788c66a7b638 | PubMed:18817316
  • Kemp, S. J., Hanotte, O., Agaba, M., Noyes, H. A., Gibson, J., Archibald, A., ... Brass, A. (2008). Genomics approaches to study the biology underlying resistance to trypanosomiasis - Some unexpected lessons. Developments in Biologicals, 132, 89-91. DOI: 10.1159/000317147. Publication link: 05f6ce8b-5dac-4b3b-9645-f2e3a6dd638b | PubMed:18817289
  • Rennie, C., Noyes, H. A., Kemp, S. J., Hulme, H., Brass, A., Hoyle, D. C., & Tate, C. (2008). Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays. BMC Genomics, 9, [317]. DOI: 10.1186/1471-2164-9-317. Publication link: 03fbaac7-6ec9-4d39-8b53-f4da1962fa7f | PubMed:18598341
  • Alttoa, A., Hinsley, T. A., Koiv, K., Brass, A., & Harro, J. (2008). Differential gene expression in rats with persistently high and low exploratory activity. In 26th Collegium Internationale Neuro-Psychopharmacologicum Congress (CINP). (Vol. 11, pp. 119-119). Cambridge University Press. . Publication link: 631aedc8-d2b0-4d1d-ba47-946cdb6d9e86

2007

  • Missier, P., Embury, S., Hedeler, C., Greenwood, M., Pennock, J., & Brass, A. (2007). Accelerating disease gene identification through integrated SNP data analysis. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 4544, 215-230. . Publication link: 59165986-02d8-4648-8788-fea1986ab69c
  • Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., ... Brass, A. (2007). A systematic strategy for large-scale analysis of genotype-phenotype correlations: Identification of candidate genes involved in African trypanosomiasis. Nucleic acids research., 35(16), 5625-5633. DOI: 10.1093/nar/gkm623. Publication link: 1a36fd2d-eb2c-41a9-a0dd-d82027a6999e | PubMed:17709344
  • Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., ... Brass, A. (2007). A systematic strategy for the discovery of candidate genes responsible for phenotypic variation. BMC Bioinformatics, 8(8), [P7]. DOI: 10.1186/1471-2105-8-S8-P7. Publication link: 1d07761a-c3d6-4d1d-a828-65a853fde198
  • Rennie, C., Hulme, H., Fisher, P., Hall, L., Agaba, M., Noyes, H. A., ... Int Assoc Biol, W. O. A. H. (Ed.) (2007). A Systematic, Data-driven Approach to the Combined Analysis of Microarray and QTL Data. In M. H. Pinard, C. Gay, P. P. Pastoret, B. Dodet, E. A. D. Biol Sci Res Council, H. Genom Network Excellence Anim, I. N. R. A. Food Safety, ... W. O. A. H. Int Assoc Biol (Eds.), International Symposium on Animal Genomics for Animal Health. (Vol. 132, pp. 293-299). Karger Publishers. . Publication link: 45773eb4-75b5-453a-8d03-e712846528c0
  • Dark, P. M., Buchan, I. E., Warhurst, G., New, J. P., Gibson, J. M., Baker, P. P. G., ... Kemp, S. (2007). Early and sustained acute falls in total serum cholesterol are associated with critical illness mortality in the setting of tight glycaemic control.Inflammation Research, 53. . Publication link: d074382a-70bb-4ce7-9f76-2da789f9a3e9
  • Hayes, A., Castrillo, J. I., Oliver, S. G., Brass, A., & Zeef, L. A. H. (2007). 9 Transcript Analysis: A Microarray Approach. In Methods in Microbiology|Methods Microbiol.. (Vol. 36, pp. 189-703). Elsevier. DOI: 10.1016/S0580-9517(06)36009-6. Publication link: d9171f8d-e457-454e-afcc-695e1b5728ef
  • Missier, P., Embury, S., Hedeler, C., Greenwood, M., Pennock, J., & Brass, A. (2007). Accelerating disease gene identification through integrated SNP data analysis. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 4544, pp. 215-230). (Lecture Notes in Computer Science). Springer Verlag. DOI: 10.1007/978-3-540-73255-6_18. Publication link: d4ad7848-d5d0-4dc3-a3f5-8b2f1e9c0ce3
  • Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., ... Brass, A. (2007). A systematic strategy for the discovery of candidate genes responsible for phenotypic variation. In BMC Bioinformatics|BMC Bioinform.. (Vol. 8). BioMed Central. DOI: 10.1186/1471-2105-8-S8-P7. Publication link: a2291aa7-c866-40b4-9851-83d29d04301b

2006

2005

  • Wolstencroft, K. J., Stevens, R., Tabernero, L., & Brass, A. (2005). PhosphaBase: An ontology-driven database resource for protein phosphatases. Proteins: Structure, Function and Bioinformatics, 58(2), 290-294. DOI: 10.1002/prot.20325. Publication link: 533928be-d2ba-4ebc-bec0-5702a9077034 | PubMed:15558746
  • Hancock, D., Wilson, M., Velarde, G., Morrison, N., Hayes, A., Hulme, H., ... Brass, A. (2005). maxdLoad2 and maxdBrowse: Standards-compliant tools for microarray experimental annotation, data management and dissemination. BMC Bioinformatics, 6, [264]. DOI: 10.1186/1471-2105-6-264. Publication link: 57dc01c1-d601-4460-9329-f16e6b8f1737 | PubMed:16269077
  • Bishop, R., Shah, T., Pelle, R., Hoyle, D., Pearson, T., Haines, L., ... de Villiers, E. P. (2005). Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage. Nucleic acids research., 33(17), 5503-5511. DOI: 10.1093/nar/gki818. Publication link: 16b5c287-18dd-402d-9204-b8f224df0e84
  • Wolstencroft, K., McEntire, R., Stevens, R., Tabernero, L., & Brass, A. (2005). Constructing ontology-driven protein family databases. Bioinformatics, 21(8), 1685-1692. DOI: 10.1093/bioinformatics/bti158. Publication link: 1a7b039b-e66d-4303-8832-9581bb0641cc | PubMed:15564301
  • Wolstencroft, K., Brass, A., Horrocks, I., Lord, P., Sattler, U., Turi, D., & Stevens, R. (2005). A little semantic web goes a long way in biology. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 3729, pp. 786-800). (Lecture Notes in Computer Science). Springer Verlag. DOI: 10.1007/11574620_56. Publication link: 2c531a94-6813-47f9-a7f5-db16d6e6a01f
  • Datta, R., DeSchoolmeester, M. L., Hedeler, C., Paton, N. W., Brass, A. M., & Else, K. J. (2005). Identification of novel genes in intestinal tissue that are regulated after infection with an intestinal nematode parasite. Infection and Immunity, 73(7), 4025-4033. DOI: 10.1128/IAI.73.7.4025-4033.2005. Publication link: c4f90703-d699-42e9-9224-e4855ef4c332 | PubMed:15972490

2004

  • Stevens, R. D., Tipney, H. J., Wroe, C. J., Oinn, T. M., Senger, M., Lord, P. W., ... Tassabehji, M. (2004). Exploring Williams-Beuren syndrome using myGrid. Bioinformatics, 20(1), 303-310. DOI: 10.1093/bioinformatics/bth944. Publication link: adeeeb7e-2a25-4a0a-8b6b-39601ed33dbb | PubMed:15262813
  • Gracey, A. Y., Fraser, E. J., Li, W., Fang, Y., Taylor, R. R., Rogers, J., ... Cossins, A. R. (2004). Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate. Proceedings of the National Academy of Sciences of the United States of America, 101(48), 16970-16975. DOI: 10.1073/pnas.0403627101. Publication link: a191d4df-7948-404b-b255-361d97d396e7
  • Garwood, K. L., Taylor, C. F., Runte, K. J., Brass, A., Oliver, S. G., & Paton, N. W. (2004). Pedro: A configurable data entry tool for XML. Bioinformatics, 20(15), 2463-2465. DOI: 10.1093/bioinformatics/bth251. Publication link: f06c2d7e-8eb0-400a-8a41-d8a167ea4e4a | PubMed:15073025
  • Garwood, K., McLaughlin, T., Garwood, C., Joens, S., Morrison, N., Taylor, C. F., ... Paton, N. W. (2004). PEDRo: A database for storing, searching and disseminating experimental proteomics data. BMC Genomics, 5, [68]. DOI: 10.1186/1471-2164-5-68. Publication link: f2ca8b29-240a-4de9-a138-edaecec0d2e0 | PubMed:15377392
  • Stevens, R. D., Tipney, H. J., Wroe, C. J., Oinn, T. M., Senger, M., Lord, P. W., ... Tassabehji, M. (2004). Exploring Williams-Beuren syndrome using myGrid. In Bioinformatics|Bioinformatics. (Vol. 20, pp. 303-310). DOI: 10.1093/bioinformatics/bth944. Publication link: ff34254c-8bdc-4966-b18b-b1453c338489
  • Tipney, H. J., Hinsley, T. A., Brass, A., Metcalfe, K., Donnai, D., & Tassabehji, M. (2004). Comparison of TFII-I gene family members deleted in Williams-Beuren syndrome. Protein Science, 13(10), 2588-2599. DOI: 10.1110/ps.04747604. Publication link: 05511caf-6fd8-4efa-bec6-36aabf6540aa | PubMed:15388857
  • Tipney, H. J., Hinsley, T. A., Brass, A., Metcalfe, K., Donai, D., Tassabehji, M., & Donnai, D. (2004). Isolation and characterisation of GTF21RD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams-Beuren syndrome. European Journal of Human Genetics, 12(7), 551-560. DOI: 10.1038/sj.ejhg.5201174. Publication link: 7769069d-484b-4c89-92e8-baf6fb5e7c65 | PubMed:15100712

2003

  • Stevens, R., Goble, C., Paton, N. W., Bechhofer, S., Ng, G., Baker, P., ... Critchlow, T. (Ed.) (2003). Complex Query Formulation Over Diverse Information Sources in TAMBIS. In Bioinformatics: Managing Scientific Data. (pp. 189-223). Morgan Kaufmann. . Publication link: 078853b7-313c-4e74-9d76-0755709524b8
  • Lord, P. W., Stevens, R. D., Brass, A., & Goble, C. A. (2003). Semantic similarity measures as tools for exploring the gene ontology. In Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|Pac Symp Biocomput. (pp. 601-612). Publication link: 66e9d708-05ce-4840-9c0c-1ae69b0c4616 | PubMed:12603061
  • Fang, Y., Brass, A., Hoyle, D. C., Hayes, A., Bashein, A., Oliver, S. G., ... Rattray, M. (2003). A model-based analysis of microarray experimental error and normalisation.Nucleic acids research, 31(16). DOI: 10.1093/nar/gng097. Publication link: 647aca2d-c21d-4b50-bee9-affe7df20ed4 | PubMed:12907748
  • Taylor, C. F., Paton, N. W., Garwood, K. L., Kirby, P. D., Stead, D. A., Yin, Z., ... Oliver, S. G. (2003). A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Nature Biotechnology, 21(3), 247-254. DOI: 10.1038/nbt0303-247. Publication link: 8fdc8250-4357-4e65-a613-203f36b65a52 | PubMed:12610571
  • Lord, P. W., Stevens, R. D., Brass, A., & Goble, C. A. (2003). Investigating semantic similarity measures across the gene ontology: The relationship between sequence and annotation. Bioinformatics, 19(10), 1275-1283. DOI: 10.1093/bioinformatics/btg153. Publication link: 7aafe560-8128-4bf6-9136-250cd6605f2d | PubMed:12835272

2002

2001

2000

1999

  • Miller, C., Gurd, J., & Brass, A. (1999). A RAPID algorithm for sequence database comparisons: Application to the identification of vector contamination in the EMBL databases. Bioinformatics, 15(2), 111-121. DOI: 10.1093/bioinformatics/15.2.111. Publication link: b69886e5-5fcc-4a8e-ad42-585056b7afb2 | PubMed:10089196
  • Eilbeck, K., Brass, A., Paton, N., & Hodgman, C. (1999). INTERACT: an object oriented protein-protein interaction database. In Proceedings / . International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology|Proc Int Conf Intell Syst Mol Biol. (pp. 87-94). AAAI. . Publication link: ce6b46e8-e95f-4190-883b-ad0c7c9629e5
  • Moussouni, F., Paton, N., Hayes, A., Oliver, S. G., Goble, C., & Brass, A. (1999). Database challenges for genome information in the post-sequencing phase. Proceedings of Databases and Expert Systems Applications, 10. . Publication link: ecff6b6e-7246-4a14-a443-90add46b70de
  • Baker, P. G., Goble, C. A., Bechhofer, S., Paton, N. W., Stevens, R., & Brass, A. (1999). An ontology for bioinformatics applications. Bioinformatics, 15(6), 510-520. DOI: 10.1093/bioinformatics/15.6.510. Publication link: 46284412-8bf7-4a9b-893d-a42975dd2f8f
  • Stevens, R., Paton, N. W., Baker, P., Ng, G., Goble, C. A., Bechhofer, S., & Brass, A. (1999). TAMBIS online: a bioinformatics source integration tool. In Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM|Proc. Int. Conf. Sci. Stat. Database Manage. SSDBM. (pp. 280). Los Alamitos, CA, United States: IEEE. DOI: 10.1109/SSDM.1999.787647. Publication link: 3d7085d9-66b1-4207-9012-2cf09d742f1b
  • Paton, N. W., Stevens, R., Baker, P., Goble, C. A., Bechhofer, S., & Brass, A. (1999). Query processing in the TAMBIS bioinformatics source integration system. In Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM|Proc. Int. Conf. Sci. Stat. Database Manage. SSDBM. (pp. 138-147). Los Alamitos, CA, United States: IEEE. . Publication link: 9e3b3cfc-55d7-4945-8718-9b7a50626b20
  • Sheehan, J., Brass, A., & Almond, A. (1999). The conformations of hyaluronan in aqueous solution: Comparison of theory and experiment. Biochemical Society Transactions, 27(2), 121-124. . Publication link: 5baba811-e9a2-437e-bc5d-548850e61aaa
  • Paton, N. W., Stevens, R., Baker, P. G., Goble, C., Bechhofer, S., Brass, A., & Ozsoyoglo, Z. M. E. A. (Ed.) (1999). {Q}uery {P}rocessing in the {TAMBIS} {B}ioinformatics {S}ource {I}ntegration {S}ystem. In Z. M. E. A. Ozsoyoglo (Ed.), Proceedings of the Eleventh International Conference on Scientific and Statistical Database Management (SSDBM). (pp. 138-147). {IEEE} Press. DOI: 10.1109/SSDM.1999.787629. Publication link: 72cc75c2-ea74-47d3-b161-d6089873ec39
  • Ray, D. W., Suen, C. S., Brass, A., Soden, J., & White, A. (1999). Structure/function of the human glucocorticoid receptor: Tyrosine 735 is important for transactivation. Molecular Endocrinology, 13(11), 1855-1863. . Publication link: 71814ce5-6245-4126-8550-8ec85fd3295a

1998

  • Baker, P. G., Brass, A., Bechhofer, S., Goble, C., Paton, N., & Stevens, R. (1998). TAMBIS--Transparent Access to Multiple Bioinformatics Information Sources. In Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology|Proc Int Conf Intell Syst Mol Biol. (Vol. 6, pp. 25-34). AAAI. . Publication link: 42cd5e03-aa04-4fee-9a3e-c4932f9bf96e
  • Almond, A., Brass, A., & Sheehan, J. K. (1998). Deducing polymeric structure from aqueous molecular dynamics simulations of oligosaccharides: Predictions from simulations of hyaluronan tetrasaccharides compared with hydrodynamic and X-ray fibre diffraction data. Journal of Molecular Biology, 284(5), 1425-1437. DOI: 10.1006/jmbi.1998.2245. Publication link: d38c675c-f287-4a8f-8446-739f8049df8c
  • Almond, A., Brass, A., & Sheehan, J. K. (1998). Dynamic exchange between stabilized conformations predicted for hyaluronan tetrasaccharides: Comparison of molecular dynamics simulations with available NMR data. Glycobiology, 8(10), 973-980. DOI: 10.1093/glycob/8.10.973. Publication link: accb7587-ee30-4c0a-8289-0316bc7fb519

1997

  • Almond, A., Sheehan, J. K., & Brass, A. (1997). Molecular dynamics simulations of the two disaccharides of hyaluronan in aqueous solution. Glycobiology, 7(5), 597-604. DOI: 10.1093/glycob/7.5.597. Publication link: 9e80765a-8b7c-4ac9-b383-a587036b431e
  • Dixon, J., Edwards, S. J., Anderson, I., Brass, A., Scambler, P. J., & Dixon, M. J. (1997). Identification of the complete coding sequence and genomic organization of the Treacher Collins syndrome gene. Genome Research, 7(3), 223-234. . Publication link: 8d632877-dab3-4658-b1ac-163d191b0c47

1995

  • Tuckwell, D. S., Humphries, M. J., & Brass, A. (1995). Protein secondary structure prediction by the analysis of variation and conservation in multiple alignments. Computer Applications in the Biosciences, 11(6), 627-32. . Publication link: 9569400b-046f-496e-b564-7674539175dd | PubMed:8808579

1994

  • Brass, A., Bancroft, A. J., Clamp, M. E., Grencis, R. K., & Else, K. J. (1994). Dynamical and critical behavior of a simple discrete model of the cellular immune system. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 50(2), 1589-1593. DOI: 10.1103/PhysRevE.50.1589. Publication link: 0754c5da-3aa4-42e8-8723-c5f61a5359f8 | PubMed:9962130
  • Brass, A., Grencis, R. K., & Else, K. J. (1994). A cellular automata model for helper T cell subset polarization in chronic and acute infection. Journal of Theoretical Biology, 166(2), 189-200. DOI: 10.1006/jtbi.1994.1017. Publication link: 6da09b85-086b-431c-9f1c-6e527d34d1b2 | PubMed:8145568
  • Tuckwell, D. S., Humphries, M. J., & Brass, A. (1994). A secondary structure model of the integrin alpha subunit N-terminal domain based on analysis of multiple alignments. Cell adhesion and communication, 2(5), 385-402. . Publication link: 647cd6ec-1d03-4b69-806a-e572b41a9316 | PubMed:7842254
  • Clements, J. M., Newham, P., Shepherd, M., Gilbert, R., Dudgeon, T. J., Needham, L. A., ... Humphries, M. J. (1994). Identification of a key integrin-binding sequence in VCAM-1 homologous to the LDV active site in fibronectin. Journal of cell science, 107 ( Pt 8), 2127-35. . Publication link: dc9176a5-4b56-4560-8e2d-430ac3d43a1b | PubMed:7527054

1992

  • Tuckwell, D. S., Brass, A., & Humphries, M. J. (1992). Homology modelling of integrin EF-hands. Evidence for widespread use of a conserved cation-binding site. The Biochemical journal, 285 ( Pt 1), 325-31. . Publication link: 05369bc2-a830-4a49-a5ad-f7450e07b82c | PubMed:1322124

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