Prof Robert Stevens - publications


 

List of publications

2016

2015

2014

  • Vigo, M., Jay, C., Stevens, R., Paulheim, H. (Ed.), Voigt, M. (Ed.), Mitschick, A. (Ed.), & Garcia, R. (Ed.) (2014). Protégé4US: Harvesting Ontology Authoring Data with Protégé. In H. Paulheim, M. Voigt, A. Mitschick, & R. Garcia (Eds.), 2nd Workshop on Human-Semantic Web Interaction Workshop (HSWI14).. Publication link: b9bb3bc9-fe56-423a-9a9a-c3d68e60df20
  • Hastings, J., Brass, A., Caine, C., Jay, C., & Stevens, R. (2014). Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference. Journal of Biomedical Semantics, 5(1). DOI: 10.1186/2041-1480-5-38. Publication link: a7cdae13-56c6-4bfc-a96f-a8ce69e4ccc2
  • Stevens, R., Sattler, U., Stevens, M., Bail, S. (Ed.), Glimm, B. (Ed.), {Jiménez-Ruiz}, E. (Ed.), ... Steigmiller, A. (Ed.) (2014). A Family History Knowledge Base in OWL 2. In S. Bail, B. Glimm, E. {Jiménez-Ruiz}, N. Matentzoglu, B. Parsia, & A. Steigmiller (Eds.), {Proceedings of the 3rd International Workshop on {OWL} Reasoner Evaluation (ORE'14)}. (Vol. 1207, pp. 71-76). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 8da19666-6319-42c9-9c36-545b6f64c0ce
  • Flórez-Vargas, O., Bramhall, M., Noyes, H., Cruickshank, S., Stevens, R., & Brass, A. (2014). The quality of methods reporting in parasitology experiments. PLoS ONE, 9(7), [e101131]. DOI: 10.1371/journal.pone.0101131, 10.1371/journal.pone.0101131. Publication link: 89ac9f6c-af45-40c2-b911-f901381c5209 | PubMed:25076044
  • Bramhall, M., Florez Vargas, O., Stevens, R., Wilson, J., Cruickshank, S., & Brass, A. (2014). LB-006 Quality of Methods Reporting in Colitis Experiments and the Subsequent Impact on the Development of A Gut Knowledge Base.Gut, 63(Suppl. 1). DOI: 10.1136/gutjnl-2014-307263.LB6. Publication link: 579ce2a9-ab0d-44c4-8e36-7441052ce06b
  • Batchelor, C. R., Brenninkmeijer, C. Y. A., Chichester, C., Davies, M., Digles, D., Dunlop, I., ... Willighagen, E. L. (2014). Scientific Lenses to Support Multiple Views over Linked Chemistry Data. In The Semantic Web - ISWC 2014 - 13th International Semantic Web Conference, Riva del Garda, Italy, October 19-23, 2014. Proceedings, Part I. (pp. 98-113). DOI: 10.1007/978-3-319-11964-9_7. Publication link: 5eb9b5f8-2f13-478a-a99d-2b4cc3c5cf4c
  • Vigo, M., Bail, S., Jay, C., & Stevens, R. (2014). Overcoming the Pitfalls of Ontology Authoring: Strategies and Implications for Tool Design. International Journal of {Human-Computer} Studies, 72(12), 835-845. DOI: 10.1016/j.ijhcs.2014.07.005. Publication link: 715537a2-7799-4be7-a87c-684cef2e54bb
  • Malone, J., Brown, A., Lister, A., Ison, J., Hull, D., Parkinson, H., & Stevens, R. (2014). The Software Ontology (SWO): A Resource for Reproducibility in Biomedical Data Analysis, Curation and Digital Preservation. Journal of Biomedical Semantics, 5(1). DOI: 10.1186/2041-1480-5-25. Publication link: 6db71c20-378e-4539-bfc1-38321a6f33b5
  • Quesada-Martínez, M., Mikroyannidi, E., {Fernández-Breis}, J. T., & Stevens, R. (2014). Approaching the axiomatic enrichment of the Gene Ontology from a lexical perspective. Artificial Intelligence in Medicine, 65(1), 35-48. DOI: 10.1016/j.artmed.2014.09.003. Publication link: 0789a4ee-3080-4555-a00a-50a53326eb44
  • Ren, Y., Parvizi, A., Mellish, C., Pan, J. Z., Van Deemter, K., & Stevens, R. (2014). Towards competency question-driven ontology authoring. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 8465, pp. 752-767). (Lecture Notes in Computer Science (LNCS)). Springer Verlag. DOI: 10.1007/978-3-319-07443-6_50. Publication link: 1cce9f92-ec2e-46e6-aab3-ef5ebed083c1
  • Hoehndorf, R., Haendel, M., Stevens, R., & Rebholz-Schuhmann, D. (2014). Thematic Series on Biomedical Ontologies in JBMS: Challenges and New Directions. Journal of Biomedical Semantics, 5(1). DOI: 10.1186/2041-1480-5-15. Publication link: 35073a42-95b3-45c9-a519-658a1f71bcaf
  • Vigo, M., Jay, C., & Stevens, R. (2014). Design insights for the next wave ontology authoring tools. In CHI '14 Proceedings of the SIGCHI Conference on Human Factors in Computing Systems. (pp. 1555-1558). (CHI '14). Association for Computing Machinery. . Publication link: 3a102d3f-c4f9-4659-aeab-10c90549f576
  • Castro, A. G., Lange, C., Lord, P. W., & Stevens, R. (Eds.) (2014). Proceedings of the 4th Workshop on Semantic Publishing Co-located with the 11th Extended Semantic Web Conference (ESWC 2014). In CEUR Workshop Proceedings - SePublica 2014. (Vol. 1155). (CEUR Workshop Proceedings - SePublica 2014). CEUR-WS.org. . Publication link: 4cdaa1e8-2148-4886-8a90-294461cf6931
  • Duck, G., Nenadic, G., Brass, A., Robertson, D. L., & Stevens, R. (2014). Extracting patterns of database and software usage from the bioinformatics literature. Bioinformatics, 30(17), 601-608. DOI: 10.1093/bioinformatics/btu471. Publication link: 40e04357-58b8-450f-ac37-d82c2a6af1c3 | PubMed:25161253

2013

  • Malone, J., & Stevens, R. (2013). Measuring the level of activity in community built bio-ontologies. Journal of Biomedical Informatics, 46(1), 5-14. DOI: 10.1016/j.jbi.2012.04.002. Publication link: 14999a28-115d-42ff-9768-004cac99aeae
  • Duque-Ramos, A., Fernández-Breis, J. T., Iniesta, M., Dumontier, M., Egaña Aranguren, M., Schulz, S., ... Stevens, R. (2013). Evaluation of the OQuaRE framework for ontology quality. Expert Systems with Applications, 40(7), 2696-2703. DOI: 10.1016/j.eswa.2012.11.004. Publication link: 0b4bacaa-7ed2-4ed9-83dc-8963bb72eb72
  • Klein, J., Eales, J., Zürbig, P., Vlahou, A., Mischak, H., & Stevens, R. (2013). Proteasix: A tool for automated and large-scale prediction of proteases involved in naturally occurring peptide generation. Proteomics, 13(7), 1077-1082. DOI: 10.1002/pmic.201200493. Publication link: 03fcdcce-a325-4bc6-ae28-b3c2b006e3b6
  • Parvizi, A., Jay, C., Mellish, C., Pan, J. Z., Ren, Y., Stevens, R., & van Deemter, K. (2013). A Pilot Experiment in Knowledge Authoring as Dialogue. In {Proceedings of the 10th International Conference on Computational Semantics (IWCS 2013) - Short Papers}. (pp. 376-382). Association for Computational Linguistics. . Publication link: 07046f15-ab2a-4ae4-bfea-c6cf0c4dd209
  • Duck, G., Nenadic, G., Brass, A., Robertson, D. L., & Stevens, R. (2013). BioNerDS: Exploring bioinformatics' database and software use through literature mining. BMC Bioinformatics, 14(1), [194]. DOI: 10.1186/1471-2105-14-194. Publication link: 705055ba-b73f-4ac1-b434-c91d5dec5042 | PubMed:23768135
  • Wolstencroft, K., Owen, S., Horridge, M., Jupp, S., Krebs, O., Snoep, J., ... Goble, C. (2013). Stealthy annotation of experimental biology by spreadsheets. Concurrency and Computation: Practice & Experience, 25(4), 467-480. DOI: 10.1002/cpe.2941. Publication link: 6fcec1e2-5c8d-4e45-9992-2d0b94cbb4f2
  • Castro, A. G., Lange, C., Lord, P. W., & Stevens, R. (Eds.) (2013). Proceedings of the 3rd Workshop on Semantic Publishing (SePublica'13). In CEUR Workshop Proceedings - Semantic Publishing. (Vol. 994). (CEUR Workshop Proceedings - Semantic Publishing). CEUR-WS.org. . Publication link: 783e8c54-2cd0-41f0-8e32-782eac226f06
  • Copeland, M., Gonçalves, R. S., Parsia, B., Sattler, U., & Stevens, R. (2013). Finding fault: Detecting issues in a versioned ontology. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 7955, pp. 113-124). (CEUR Workshop Proceedings). CEUR-WS.org. DOI: 10.1007/978-3-642-41242-4_10. Publication link: 5e72cac7-c7ec-4254-ba97-08a626bc85fe
  • Liang, S. F., Scott, D., Stevens, R., & Rector, A. (2013). OntoVerbal: a Generic Tool and Practical Application to {SNOMED} {CT}. International Journal of Advanced Computer Science and Applications (IJACSA), 4(6), 227-239. DOI: 10.14569/IJACSA.2013.040631. Publication link: 50fe5fdd-0d51-49db-b493-c1145ff6326d
  • {Quesada-Mart{\'\i}nez}, M., {Fernández-Breis}, J. T., Stevens, R., Rojas, I. (Ed.), & {Ortuño-Guzman}, F. M. (Ed.) (2013). Analysis and Classification of Bio-ontologies by the Structure of their Labels. In I. Rojas, & F. M. {Ortuño-Guzman} (Eds.), {Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, (IWBBIO 2013)}. (pp. 713-720). Copicentro Editorial. . Publication link: 79db3b1e-59b9-46e4-895b-956225f8243c
  • Mikroyannidi, E., Stevens, R., Iannone, L., {Rodriguez-Muro}, M. (Ed.), Jupp, S. (Ed.), & Srinivas, K. (Ed.) (2013). Tradeoffs in Measuring Entity Similarity for Pattern Detection in {OWL} Ontologies. In M. {Rodriguez-Muro}, S. Jupp, & K. Srinivas (Eds.), {Proceedings of the 10th International Workshop on {OWL} Experiences and Directions {(OWLED'13)} co-located with 10th Extended Semantic Web Conference {(ESWC'13)}}. (Vol. 1080). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 94ab1551-775c-4238-8b03-5d1f7fa48260
  • Brown, A., Stevens, R., & Pettifer, S. (2013). Making graph-based diagrams work in sound: the role of annotation. Human Computer Interaction, 28(3), 193-221. DOI: 10.1080/07370024.2012.697010. Publication link: e29ffe52-126e-40f9-a029-be2f94661424
  • Quesada-Martínez, M., Fernández-Breis, J. T., & Stevens, R. (2013). Lexical characterization and analysis of the BioPortal ontologies. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 7885, pp. 206-215). (Lecture Notes in Computer Science (LNCS)). Springer Verlag. DOI: 10.1007/978-3-642-38326-7_31. Publication link: f1a89f9d-1abe-4b47-8cb5-8b24bc4199f2
  • Moulos, P., Klein, J., Jupp, S., Stevens, R., Bascands, J. L., & Schanstra, J. P. (2013). The KUPNetViz: A biological network viewer for multiple -omics datasets in kidney diseases. BMC Bioinformatics, 14(1), [235]. DOI: 10.1186/1471-2105-14-235. Publication link: d959862c-03b5-4e61-bc14-b6f9e3a4c4ff
  • Brenninkmeijer, C. Y. A., Dunlop, I., Goble, C., Gray, A. J. G., Pettifer, S., Stevens, R., ... Splendiani, A. (Ed.) (2013). Computing Identity Co-Reference Across Drug Discovery Datasets. In A. Paschke, A. Burger, P. Romano, M. S. Marshall, & A. Splendiani (Eds.), {Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS)}. (Vol. 1114). (CEUR Workshop Proceedings - Semantic Web Applications and Technologies for Life sciences (SWAT4LS)). CEUR-WS.org. . Publication link: c7b540e2-b1f8-4117-80d1-041884dc023d

2012

  • Mikroyannidi, E., Manaf, N. A. A., Iannone, L., & Stevens, R. (2012). Analysing syntactic regularities in ontologies. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 849). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 40b92732-5683-4cae-b9fa-8ca139c9af9e
  • Rector, A., Brandt, S., Drummond, N., Horridge, M., Pulestin, C., & Stevens, R. (2012). Engineering use cases for modular development of ontologies in OWL. Applied Ontology, 7(2), 113-132. DOI: 10.3233/AO-2012-0107. Publication link: 468a3e07-e15e-49cd-9569-9f5381d0f9fa
  • Klein, J., Jupp, S., Moulos, P., Fernandez, M., Buffin-Meyer, B., Casemayou, A., ... Schanstra, J. P. (2012). The KUPKB: A novel Web application to access multiomics data on kidney disease. FASEB Journal, 26(5), 2145-2153. DOI: 10.1096/fj.11-194381. Publication link: 453f7744-2db2-44d0-9c58-cada6a64b216
  • Quesada-Martínez, M., Fernández-Breis, J. T., & Stevens, R. (2012). Extraction and analysis of the structure of labels in biomedical ontologies. In International Conference on Information and Knowledge Management, Proceedings|Int Conf Inf Knowledge Manage. (pp. 7-16). (MIXHS '12). ACM. DOI: 10.1145/2389672.2389675. Publication link: 00371e72-295a-4cad-b713-a80d4bc07774
  • Cornet, R., & Stevens, R. (Eds.) (2012). Proceedings of the 3rd International Conference on Biomedical Ontology {(ICBO'12)}. In CEUR Workshop Proceedings - KR-MED : ICBO'12. (Vol. 897). (CEUR Workshop Proceedings - KR-MED : ICBO'12). CEUR-WS.org. . Publication link: 0657ddb4-151f-420d-ab4e-8d21aae8b2e5
  • Mikroyannidi, E., Stevens, R., Iannone, L., & Rector, A. (2012). Analysing Syntactic Regularities and Irregularities in {SNOMED-CT}. Biomedical Semantics, 3(1). DOI: 10.1186/2041-1480-3-8. Publication link: 241d23ae-d6ba-4ccb-b5fd-83d3da33b57b
  • Mikroyannidi, E., Iannone, L., Rector, A., Cornet, R. (Ed.), & Stevens, R. (Ed.) (2012). RIO: The Regularities Inspector for Ontologies Plugin for Protege. In R. Cornet, & R. Stevens (Eds.), {Proceedings of the 3rd International Conference on Biomedical Ontology {(ICBO'12)}}. (Vol. 897). (CEUR Workshop Proceedings - KR-MED Series). CEUR-WS.org. . Publication link: 1e964fc1-aab6-42fd-a2ad-46ee1c12c89a
  • Jupp, S., Gibson, A., Malone, J., Parkinson, H., & Stevens, R. (2012). Taking a view on bio-ontologies. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 897). (CEUR Workshop Proceedings - KR-MED). CEUR-WS.org. . Publication link: 17fb9009-8ca3-4223-9aa6-82c94721ee8b
  • Copeland, M., Brown, A., Parkinson, H., Stevens, R., & Malone, J. (2012). The SWO Project: A case study of applying Agile Ontology Engineering methods in community driven ontologies. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 897). (CEUR Workshop Proceedings - KR-MED: ICBO'12). CEUR-WS.org. . Publication link: 75f57de3-43c6-463a-a778-a13ac60cd45f
  • Abdul Manaf, N. A., Bechhofer, S., & Stevens, R. (2012). The current state of SKOS vocabularies on the web. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 7295, pp. 270-284). (Lecture Notes in Computer Science (LNCS)). Springer Verlag. DOI: 10.1007/978-3-642-30284-8_25. Publication link: 992a0781-8adb-44e5-ac04-154b9530af87
  • {Quesada-Mart{\'\i}nez}, M., {Fernández-Breis}, J. T., Stevens, R., Moss, L. (Ed.), & Sleeman, D. (Ed.) (2012). Enrichment of {OWL} Ontologies: A Method for Defining Axioms from Labels. In L. Moss, & D. Sleeman (Eds.), Proceedings of the First International Workshop on Capturing and Refining Knowledge in the Medical Domain (K-MED'12) - Co-located with The 18th International Conference on Knowledge Engineering and Knowledge Management (EKAW 2012). (pp. 1-10). Publication link: 68a02d70-94c4-4d6c-8a0a-f63d55c4c9c9
  • Lord, P., Cockell, S., & Stevens, R. (2012). Three steps to heaven: Semantic publishing in a real world workflow. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 903, pp. 23-34). (CEUR Workshop Proceedings - Semantic Publishing). CEUR-WS.org. . Publication link: 55541d1b-b7bb-4635-85a0-92871471d460
  • Liang, S. F., Scott, D., Rector, A., Cornet, R. (Ed.), & Stevens, R. (Ed.) (2012). OntoVerbal: A Protege Plugin for Verbalising Ontology Classes. In R. Cornet, & R. Stevens (Eds.), {Proceedings of the 3rd International Conference on Biomedical Ontology {(ICBO'12)}}. (Vol. 897). (CEUR Workshop Proceedings - KR-MED). CEUR-WS.org. . Publication link: 4f8ffd0c-7298-49fc-9ff4-634e786f8bb0
  • Kalankesh, L. R., Stevens, R., & Brass, A. (2012). The language of gene ontology: a Zipf's law analysis. BMC Bioinformatics, 13(1), [127]. DOI: 10.1186/1471-2105-13-127. Publication link: 5fba6ca6-09c5-4750-b40f-2f425768c195 | PubMed:22676436
  • Manaf, N. A. A., Bechhofer, S., & Stevens, R. (2012). Common Modelling Slips in SKOS Vocabularies. In P. Klinov, & M. Horridge (Eds.), Proceedings of OWL: Experiences and Directions Workshop 2012, Heraklion, Crete, Greece, May 27-28, 2012. (Vol. 849). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 5db76de4-7930-4ec6-824c-23b1ebad81d0
  • Lord, P., Cockell, S., & Stevens, R. (2012). Three steps to heaven: Semantic publishing in a real world workflow. CEUR Workshop Proceedings, 903, 23-34. DOI: 10.3390/fi4041004. Publication link: aa5134d1-80c8-478e-af0f-f6bcb5ce82dc
  • Stevens, R., & Lord, P. (2012). Semantic publishing of knowledge about amino acids. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 903, pp. 45-47). (CEUR Workshop Proceedings - Semantic Publishing). CEUR-WS.org. . Publication link: aa1cbfe6-cff2-4f1a-a07c-d9651e348ffd
  • Splendiani, A., Rawlings, C. J., Kuo, S. C., Stevens, R., & Lord, P. (2012). Lost in translation: Data integration tools meet the semantic web (Experiences from the Ondex project). In Lecture Notes in Electrical Engineering|Lect. Notes Electr. Eng.. (Vol. 157, pp. 87-97). (Lecture Notes in Electrical Engineering). Springer Verlag. DOI: 10.1007/978-3-642-28798-5_13. Publication link: bbb41c6a-6f10-497e-b442-c65f692d42c2
  • Siwy, J., Zoja, C., Klein, J., Benigni, A., Mullen, W., Mayer, B., ... Bahlmann, F. H. (2012). Evaluation of the Zucker Diabetic Fatty (ZDF) Rat as a Model for Human Disease Based on Urinary Peptidomic Profiles. PLoS ONE, 7(12), [e51334]. DOI: 10.1371/journal.pone.0051334. Publication link: baa30b0c-bd95-4fb0-b394-a07122d5a535
  • Jupp, S., Horridge, M., Iannone, L., Klein, J., Owen, S., Schanstra, J., ... Stevens, R. (2012). Populous: a tool for building OWL ontologies from templates. BMC Bioinformatics, 13(supp 1). DOI: 10.1186/1471-2105-13-S1-S5. Publication link: c9fcbfc1-d6ab-483d-bb23-f664a0ccb225 | PubMed:22373396
  • Hastings, J., Magka, D., Batchelor, C., Duan, L., Stevens, R., Ennis, M., & Steinbeck, C. (2012). Structure-based classification and ontology in chemistry. Journal of Cheminformatics, 4(4), [8]. DOI: 10.1186/1758-2946-4-8. Publication link: da315011-bd5a-4751-817f-535eeceeb89c
  • Duck, G., Robertson, D., Stevens, R., & Nenadic, G. (2012). Ambiguity and variability of database and software names in bioinformatics. In SMBM 2012 - Proceedings of the 5th International Symposium on Semantic Mining in Biomedicine|SMBM - Proc. Int. Symp. Semantic Min. Biomed.. (pp. 2-9). http://www.zora.uzh.ch/64476/. DOI: 10.5167/uzh-64476. Publication link: ea2ea0a0-da0a-4e8c-b801-2219c3bb5cde
  • González, A. R., Pathak, J., Wilkinson, M., Shah, N., Stevens, R., Boyce, R. D., & {Garciá-Crespo}, A. (Eds.) (2012). Proceedings of the Joint Workshop on Semantic Technologies Applied to Biomedical Informatics and Individualized Medicine in Conjunction with the 11th International Semantic Web Conference 2012 (ISWC 2012). In CEUR Workshop Proceedings - SATBI+SWIM 2012. (Vol. 930). (CEUR Workshop Proceedings - SATBI+SWIM 2012). CEUR-WS.org. . Publication link: f8098743-3901-45fd-bee7-e3dd1312ef12

2011

  • Rector, A., Iannone, L., & Stevens, R. (2011). Quality assurance of the content of a large DL-based terminology using mixed lexical and semantic criteria: Experience with SNOMED CT. In KCAP 2011 - Proceedings of the 2011 Knowledge Capture Conference|KCAP - Proc. Knowl. Capture Conf.. (pp. 57-64). ACM. DOI: 10.1145/1999676.1999688. Publication link: f44026b8-7a7b-496e-9418-09f0d16e4eda
  • Stevens, R., Malone, J., Williams, S., Power, R., & Third, A. (2011). Automating generation of textual class definitions from OWL to English. Journal of Biomedical Semantics, 2(Suppl 2 S5), S5. DOI: 10.1186/2041-1480-2-S2-S5. Publication link: fe5023bb-cfb2-4555-a7f0-328f07880a15
  • Jupp, S., Horridge, M., Iannone, L., Klein, J., Owen, S., Schanstra, J., ... Stevens, R. (2011). Populous: A tool for populating an ontology. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 833, pp. 294-295). (CEUR Workshop Proceedings - (ICBO 2011)). CEUR-WS.org. . Publication link: c841e6f7-bf9a-4216-841b-6ac2795688a5
  • Randall, D., Procter, R., Lin, Y., Poschen, M., Sharrock, W., & Stevens, R. (2011). Distributed ontology building as practical work. International Journal of Human Computer Studies, 69(4), 220-233. DOI: 10.1016/j.ijhcs.2010.12.011. Publication link: d4b8acd0-b2f4-40f2-a490-5e08bd14f876
  • Eales, J., Demetriou, G., & Stevens, R. (2011). An Exercise in Kidney Factomics: From Article Titles to RDF Knowledgebase. In Intelligent Systems in Molecular Biology (ISMB).. Publication link: d0ddfead-2358-451b-8a09-35fcc23981dd
  • Liang, S. F., Stevens, R., Scott, D., & Rector, A. (2011). Automatic verbalisation of SNOMED classes using OntoVerbal. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 6747, pp. 338-342). (Lecture Notes in Computer Science LCNS). Springer Verlag. DOI: 10.1007/978-3-642-22218-4_43. Publication link: e09b2063-83e6-4f8f-9c2e-f6e3e2bf3ada
  • Afzal, H., Eales, J., Stevens, R., & Nenadic, G. (2011). Mining Semantic Networks of Bioinformatics e-Resources from the Literature. Journal of Biomedical Semantics, 2(Suppl. 1). DOI: 10.1186/2041-1480-2-S1-S4. Publication link: 9e17947f-033f-4940-a829-e871b463874b
  • Jupp, S., Eales, J., Fischer, S., Land, S., Ramgolam, R., Williams, A., & Stevens, R. (2011). The RapidMiner Plugin for Taverna: Bringing Data Mining Tools to Bioinformatics Workflows. In Bioinformatics Open Source Conference 2011, a SIG held in conjuction with ISMB 2011.. Publication link: 9be127cc-e18f-4981-9e9d-8cf97fb5e1b4
  • Eales, J., Demetriou, G., & Stevens, R. (2011). Creating a focused corpus of factual outcomes from biomedical experiments. In {Proceedings of the Mining Complex Entities from Biomedical Data (MIND 2011), A Workshop held in Conjuction with PKDD 2011)}.. Publication link: 94321c75-f71f-481f-bdf0-f622c27907b1
  • Lord, P., Cockell, S., Swan, D. C., & Stevens, R. (2011). The Ontogenesis Knowledgeblog: Lightweight Publishing about Semantics, with Lightweight Semantic Publishing. In {Proceedings of the 1st Workshop on Semantic Web Technologies for Libraries and Readers}.. Publication link: 89f6b30c-bec1-47c4-900d-3d99a23a5ab8
  • Mikroyannidi, E., Iannone, L., Stevens, R., & Rector, A. (2011). Inspecting regularities in ontology design using clustering. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 7031, pp. 438-453). (Lecture Notes in Computer Science LCNS). Springer Verlag. DOI: 10.1007/978-3-642-25073-6_28. Publication link: 53131678-84ce-4650-b089-e183e1c001df
  • Duque-Ramos, A., Fernández-Breis, J. T., Stevens, R., & Aussenac-Gilles, N. (2011). OQuaRE: A square-based approach for evaluating the quality of ontologies. Journal of Research and Practice in Information Technology, 43(2), 159-176. . Publication link: 5b54de5d-3529-448e-894d-e7ee1ab0bc00
  • Liang, S. F., Stevens, R., & Rector, A. (2011). OntoVerbal-M: A multilingual verbaliser for SNOMED CT. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 775, pp. 13-24). (CEUR Workshop Proceedings). CEUR-WS. . Publication link: 5b85dd51-4ac1-4deb-8e5e-2757699a8ac2
  • Eales, J., Demetriou, G., & Stevens, R. (2011). An exercise in kidney factomics: from article titles to RDF knowledge base. In Proceedings of the Bio-ontologies SIG, ISMB 2011.. Publication link: 738dc0b7-8838-43eb-bfe2-5e8104b9fa8d
  • Mikroyannidi, E., Stevens, R., & Rector, A. (2011). Identifying Ontology Design Styles with Metrics. In Proceedings of the 7th International Workshop on Semantic Web Enabled Software Engineering (SWESE).. Publication link: 4fbf45e8-5ae1-495a-a223-5db895f0a222
  • Mironov, V., Antezana, E., Egaa, M., Blondé, W., De Baets, B., Kuiper, M., & Stevens, R. (2011). Flexibility and utility of the cell cycle ontology. Applied Ontology, 6(3), 247-261. DOI: 10.3233/AO-2011-0097. Publication link: 2dac9c46-639f-4d8e-b3c8-25a51b1a80c6
  • Jupp, S., Klein, J., Moulos, P., Schanstra, J., & Stevens, R. (2011). Ontologies come of age with the iKUP browser. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 809, pp. 25-28). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 3372b973-2fcd-4558-8579-1feda3336a30
  • Liang, S. F., Scott, D., Stevens, R., & Rector, A. (2011). Unlocking Medical Ontologies for Non-Ontology Experts. In Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, BioNLP'11. (pp. 174-181). {ACL}. . Publication link: 01fcf7c3-52b8-4387-8c5d-dad675443d07
  • Jupp, S., Klein, J., Schanstra, J., & Stevens, R. (2011). Developing a Kidney and Urinary Pathway Knowledge Base. Journal of Biomedical Semantics, 2(Suppl. 2). DOI: 10.1186/2041-1480-2-S2-S7. Publication link: 10ff8a7f-9ddb-4b77-9a16-97edc75ea610
  • Stevens, R., Jupp, S., Klein, J., & Schanstra, J. (2011). Using Semantic Web Technologies to Manage Complexity and Change in Biomedical Data. In Proceeding of the 33rd Engineering in Medicine and Biology Society,EMBC, 2011 Annual International Conference of the IEEE. (pp. 3708-3711). IEEE. DOI: 10.1109/IEMBS.2011.6090629.. Publication link: 17803b9e-6119-4adc-9af9-bac0172c0753
  • Jupp, S., Stevens, R., & Hoehndorf, R. (2011). Exploring Gene Ontology Annotations with OWL. Bio-Ontologies. . Publication link: 13e5ef0c-d9ba-4574-b59e-44d519cabac7

2010

  • Stevens, R., Malone, J., Williams, S., Power, R., & Third, A. (2010). Automating Generation of Textual Class Definitions from OWL to English. In Proceedings of Bio-ontologies SIG; Co-located with ISMB, Boston, MA, USA.. Publication link: 5df3c0de-73d5-4d8e-92cd-0fe98b4c6e5b
  • Jupp, S., Horridge, M., Iannone, L., Klein, J., Owen, S., Schanstra, J., ... Wolstencroft, K. (2010). Populous: A tool for populating ontology templates. In Semantic Web Applications and tools for the Life Sciences (SWAT4LS).. Publication link: 64ab0342-8a3e-4356-8fd0-98657642af09
  • Manaf, N. A. A., Bechhofer, S., & Stevens, R. (2010). A survey of identifiers and labels in OWL ontologies. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 614). (CEUR Workshop Proceedings - OWLED 2010). CEUR-WS.org. . Publication link: 6765b0f6-b323-448e-b4d9-a4ee3b249427
  • Fernandez-Breis, J. T., Iannone, L., Palmisano, I., Rector, A. L., & Stevens, R. (2010). Enriching the gene ontology via the dissection of labels using the ontology pre-processor language. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 6317, pp. 59-73). (Lecture Notes in Computer Science LNCS). Springer Verlag. DOI: 10.1007/978-3-642-16438-5_5. Publication link: 908324c9-99d8-47d9-aa22-e974515dfd00
  • Lord, P., Malone, J., Stevens, R., & Shotton, D. (2010). Blogging the Word about Ontologies. In Proceedings of Bio-Ontologies SIG; Co-located with ISMB.. Publication link: 80cd7b9a-ba10-48ae-abab-0be7585524cc
  • Iannone, L., Palmisano, I., Rector, A. L., & Stevens, R. (2010). Assessing the safety of knowledge patterns in OWL ontologies. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 6088, pp. 137-151). (Lecture Notes in Computer Science LNCS). Springer Verlag. DOI: 10.1007/978-3-642-13486-9_10. Publication link: 78ec04a1-1d91-48f2-b3d5-46f4c76ab555
  • Jupp, S., Klein, J., Schanstra, J., & Stevens, R. (2010). Developing a Kidney and Urinary Pathway Knowledge Base. In Proceedings of Bio-ontologies SIG; Co-located with ISMB.. Publication link: 7abe8668-fa25-4471-baf3-4e2a3e37d6ff
  • Malone, J., Badarinarayan, N., Ison, J., Stevens, R., & Parkinson, H. (2010). An Ontology of Bioinformatics Software. In Proceedings of Bio-Ontologies SIG; Co-located with ISMB.. Publication link: 1f84ec09-76bb-4425-9f02-4ccaed629494
  • Lord, P., & Stevens, R. (2010). Adding a little reality to building ontologies for biology. PLoS ONE, 5(9), 1-7. [e12258]. DOI: 10.1371/journal.pone.0012258. Publication link: 0324a092-735a-4984-9fe7-b957862613bd
  • Garcia, A., {O'Neill}, K., Garcia, L. J., Lord, P., Stevens, R., Corcho, O., ... Cheung, K. (Ed.) (2010). Developing Ontologies within Decentralised Settings. In Semantic e-Science. (Vol. 11, pp. 99-139). (Annals of Information Systems). Springer Verlag. DOI: 10.1007/978-1-4419-5908-9_4. Publication link: 36083c91-5569-4cc1-ba9e-caee96c40c0f
  • {Duque-Ramos}, A., Uriel López, U., {Fernández-Breis}, J. T., & Stevens, R. (2010). Towards SQUaRE based Quality Evaluation Framework for Ontologies. In Workshop on Ontology Quality (EKAW'10). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 4ac32725-439a-4424-a992-c07b74fb39f8
  • Aranguren, M. E., Stevens, R., Antezana, E., Fernández-Breis, J. T., Kuiper, M., & Mironov, V. (2010). Technologies and Best Practices for Building Bio-Ontologies. In Knowledge-Based Bioinformatics: From Analysis to Interpretation|Knowledge-Based Bioinformatics: From Anal. to Interpret.. (pp. 67-86). John Wiley & Sons . DOI: 10.1002/9780470669716.ch3. Publication link: d7fbb33c-5a86-4c13-a65d-e1a1ab1e155b
  • Jupp, S., Eales, J., Fischer, S., {Uwe-Kietz}, J., Ramgolam, R., Williams, A., ... Goble, C. (2010). e-LICO: Delivering Data Mining to the Life Science Community. In Proceedings of the 7th Microsoft eScience Workshop. (pp. 83-84.). Publication link: ce50bd95-f216-4524-94ff-b1cbfa703000
  • Dobson, P. D., Smallbone, K., Jameson, D., Simeonidis, E., Lanthaler, K., Pir, P., ... Mendes, P. (2010). Further developments towards a genome-scale metabolic model of yeast. BMC systems biology, 4, [145]. DOI: 10.1186/1752-0509-4-145. Publication link: b21a05ab-1b2c-46de-87ff-611863cc29fd | PubMed:21029416
  • Bhagat, J., Tanoh, F., Nzuobontane, E., Laurent, T., Orlowski, J., Roos, M., ... Goble, C. A. (2010). BioCatalogue: A universal catalogue of web services for the life sciences. Nucleic acids research., 38(2), W689-W694. [gkq394]. DOI: 10.1093/nar/gkq394. Publication link: c699d7ad-5aed-44f1-bdf9-72251652e933 | PubMed:20484378

2009

  • Afzal, H., Stevens, R., & Nenadic, G. (2009). Mining semantic descriptions of bioinformatics web resources from the literature. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 5554, pp. 535-549). (Lecture Notes in Computer Science). Springer Verlag. DOI: 10.1007/978-3-642-02121-3_40. Publication link: 22efac89-f703-4f3d-b19f-6c37002e48c3
  • Antezana, E., Blondé, W., Egaña, M., Rutherford, A., Stevens, R., De Baets, B., ... Kuiper, M. (2009). BioGateway: A semantic systems biology tool for the life sciences. BMC Bioinformatics, 10(10), S11. [1471]. DOI: 10.1186/1471-2105-10-S10-S11. Publication link: 091d9fd4-81a8-4071-8552-ce97890da245
  • Stevens, R., Fisher, P., Zhao, J., Goble, C., & Brass, A. (2009). Building Workflows that Traverse the Bioinformatics Data Landscape. In Data Mining Techniques in Grid Computing Environments|Data Min. Tech. in Grid Computing Environments. (pp. 141-163). John Wiley & Sons . DOI: 10.1002/9780470699904.ch9. Publication link: 3048fa58-d5e2-40a1-aba2-093a7acb0b46
  • Iannone, L., Rector, A., & Stevens, R. (2009). Embedding knowledge patterns into OWL. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 5554, pp. 218-232). (Lecture Notes in Computer Science LNCS). Springer Verlag. DOI: 10.1007/978-3-642-02121-3_19. Publication link: 40a6b2f1-4236-44ca-9865-81dd0240b7e8
  • Power, R., Stevens, R., Scott, D., & Rector, A. (2009). Editing OWL through generated CNL. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 448). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 5181f9e0-ad25-4e28-b006-536550c477e2
  • Brewster, C., Jupp, S., Luciano, J., Shotton, D., Stevens, R. D., & Zhang, Z. (2009). Issues in learning an ontology from text. BMC Bioinformatics, 10(5), [S1]. DOI: 10.1186/1471-2105-10-S5-S1. Publication link: 8a65980a-5abf-4147-8500-de12976d2011
  • Fisher, P., Noyes, H., Kemp, S., Stevens, R., & Brass, A. (2009). A systematic strategy for the discovery of candidate genes responsible for phenotypic variation.Methods in Molecular Biology, 573, 329-345. DOI: 10.1007/978-1-60761-247-6_18. Publication link: 858ac390-9020-4a21-b9f0-51e562bf4703 | PubMed:19763936
  • De Roure, D., Goble, C., & Stevens, R. (2009). The design and realisation of the m yExperiment Virtual Research Environment for social sharing of workflows. Future Generation Computer Systems, 25(5), 561-567. DOI: 10.1016/j.future.2008.06.010. Publication link: 84174aaa-6b99-44de-ae60-d520ffe27fb6
  • Jupp, S., Bechhofer, S., & Stevens, R. (2009). A flexible API and editor for SKOS. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 5554, pp. 506-520). (Lecture Notes in Computer Science). Springer Verlag. DOI: 10.1007/978-3-642-02121-3_38. Publication link: 80b7975a-7ef9-4347-8f50-58ec01506408
  • Fisher, P., Noyes, H., Kemp, S., Stevens, R., & Brass, A. (2009). A systematic strategy for the discovery of candidate genes responsible for phenotypic variation. In Methods in molecular biology (Clifton, N.J.)|Methods Mol. Biol.. (Vol. 573, pp. 329-345). ({Methods in Molecular Biology{\texttrademark}}). Humana Press. DOI: 10.1007/978-1-60761-247-6_18.. Publication link: 808ab777-4d8f-48bd-9024-16d6110d396f
  • Stevens, R., Hadzic, M., Wongthongtham, P., Dillon, T., & Chang, E. (2009). Introduction to ontology. In Studies in Computational Intelligence|Stud. Comput. Intell.. (Vol. 219, pp. 37-60). (Bioinformatics and Biomedical Imaging). Artech House. DOI: 10.1007/978-3-642-01904-3_3. Publication link: 9fd84f51-5a59-4845-b808-1a379a810367
  • Oliver, H., Diallo, G., de Quincey, E., Alexopoulou, D., Habermann, B., Kostkova, P., ... Madle, G. (2009). A user-centred evaluation framework for the Sealife semantic web browsers. BMC Bioinformatics, 10(10), S14. [1471]. DOI: 10.1186/1471-2105-10-S10-S1. Publication link: a07e52ff-60ca-4e0e-be4d-260debbfc896
  • Stevens, R., Lord, P. W., {Liu, L. (Ed.), & Özsu}, M. T. (Ed.) (2009). Ontologies and Life Science Data Management. In {Encyclopedia of Database Systems}. (pp. 1960-1963). Springer Verlag. DOI: 10.1007/978-0-387-39940-9_631. Publication link: a0a15a58-7d5a-49e6-afc7-4efab194eea0
  • Schober, D., Malone, J., Stevens, R., & Smith, B. (Ed.) (2009). Practical Experiences in Concurrent, Collaborative Ontology Building Using Collaborative Protégé. In B. Smith (Ed.), Proceedings of the International Conference on Biomedical Ontology (ICBO 2009). (pp. 147-150). Publication link: ee28822b-35d5-4ea8-a4c0-8cd88ed574fc
  • Tsarkov, D., Sattler, U., Stevens, M., & Stevens, R. (2009). A solution for the man-man problem in the family history knowledge base. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 529). Publication link: eefe024e-c743-4aa5-b161-0e23c586fead
  • Wolstencroft, K., Brenchley, R., Tabernero, L., Stevens, R., Popescu, M. (Ed.), & Xu, D. (Ed.) (2009). Analysing and Classifying Protein Family Data using OWL Reasoning. In {Data Mining Applications Using Ontologies in Biomedicine}. (pp. 63-82). (Bioinformatics and Biomedical Imaging). Artech House. . Publication link: dfb2a7c0-113b-4bce-bd30-91e257adc6c9
  • Antezana, E., Egaña, M., Blondé, W., Illarramendi, A., Bilbao, I., De Baets, B., ... Kuiper, M. (2009). The Cell Cycle Ontology: An application ontology for the representation and integrated analysis of the cell cycle process. Genome Biology, 10(5), [R58]. DOI: 10.1186/gb-2009-10-5-r58. Publication link: d9202196-28da-4673-bde5-7e037571a6f7
  • Afzal, H., Eales, J., Stevens, R., & Nenadic, G. (2009). Mining semantic networks of bioinformatics e-resources from the literature. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 559). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: c4bd00ad-1830-4819-885d-ea0857852606
  • {Fernandez-Breis}, J. T., Aranguren, M. E., & Stevens, R. (2009). A Quality Evaluation Framework for Bio-Ontologies. In Proceedings of the International Conference on Biomedical Ontologies (ICBO 2009). DOI: 10.1038/npre.2009.3479.1. Publication link: c669aa24-1c41-4b17-bade-eacbb229fc74
  • Canevet, C., Splendiani, A., Kuo, S., Stevens, R., Lord, P., & Rawlings, C. (2009). Ondex: Data integration and visualisation for the Semantic Web. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 559). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: f49b1813-77c9-46a1-b7b6-30220c2537a1

2008

  • Belhajjame, K., Embury, S. M., Paton, N. W., Stevens, R., & Goble, C. A. (2008). Automatic annotation of Web services based on workflow definitions. ACM Transactions on the Web, 2(2), [11]. DOI: 10.1145/1346237.1346239. Publication link: 0153d3a8-0813-405d-973c-ab03abb6275c
  • Antezana, E., {Blondé}, W., {Egaña}, M., Rutherford, A., Stevens, R., {De Baets}, B., ... Splendiani, A. (Ed.) (2008). Structuring the life science resourceome for Semantic Systems Biology: lessons from the BioGateway project. In A. Burger, A. Paschke, P. Romano, & A. Splendiani (Eds.), {Proceedings of the Workshop on Semantic Web Applications and Tools for the Life Sciences: {(SWAT4LS'08)}}. (Vol. 435). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 0cd3b67c-1745-45db-a367-53c798e95c44
  • Jay, C., Stevens, R., Hubbold, R., & Glencross, M. (2008). Using haptic cues to aid nonvisual structure recognition. ACM Transactions on Applied Perception, 5(2), 8-8. DOI: 10.1145/1279920.1279922. Publication link: 17c41f25-d638-4a8b-9ee1-5c7a2332bf5d
  • Moreau, L., Ludäscher, B., Altintas, I., Barga, R. S., Bowers, S., Callahan, S., ... Zhao, Y. (2008). Special issue: The first Provenance Challenge. Concurrency and Computation: Practice & Experience, 20(5), 409-418. DOI: 10.1002/cpe.1233. Publication link: 4864fba9-3a8b-46fd-a01e-6b3572eea335
  • Rector, A., Stevens, R., Dolbear, C. (Ed.), Ruttenberg, A. (Ed.), & Sattler, U. (Ed.) (2008). Barriers to the use of OWL in Knowledge Driven Applications. In C. Dolbear, A. Ruttenberg, & U. Sattler (Eds.), Proceedings of the 5th OWLED Workshop on OWL: Experiences and Directions, collocated with the 7th International Semantic Web Conference (ISWC'08). (Vol. 432). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 436c9786-1731-4f37-a7eb-8d829c673acd
  • Goble, C., & Stevens, R. (2008). State of the nation in data integration for bioinformatics. Journal of Biomedical Informatics, 41(5), 687-693. DOI: 10.1016/j.jbi.2008.01.008. Publication link: 8119647a-d55c-4050-8421-958846f6c49d
  • Stevens, R., Burger, A. (Ed.), Davidson, D. (Ed.), & Baldock, R. (Ed.) (2008). Foreword. In {Anatomy Ontologies for Bioinformatics, Principles and Practice}. (Vol. 6). (Computational Biology). Springer Verlag. . Publication link: 7e5fb01e-7bd7-41bf-b68c-e373266c49e6
  • Stevens, R., Lord, P., Staab, S. (Ed.), & Studer, R. (Ed.) (2008). Application of Ontologies in Bioinformatics. In Handbook on Ontologies in Information Systems. (Second ed., pp. 347-485). (International Handbook on Information Systems). Springer Verlag. . Publication link: 7d2038f0-4684-49c7-b590-77aef2254eea
  • Zhao, J., Goble, C., Stevens, R., & Turi, D. (2008). Mining Taverna's semantic web of provenance. Concurrency and Computation: Practice & Experience, 20(5), 463-472. DOI: 10.1002/cpe.1231. Publication link: 8470e16b-e41f-4b45-af36-46b60f879207
  • Egaña, M., Rector, A., Stevens, R., & Antezana, E. (2008). Applying ontology design patterns in bio-ontologies. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 5268, pp. 7-16). Springer-Verlag Berlin. DOI: 10.1007/978-3-540-87696-0-4. Publication link: 92d0a0f6-bec7-4304-b1a6-551877d8d849
  • Bechhofer, S., Yesilada, Y., Stevens, R., Jupp, S., & Horan, B. (2008). Using ontologies and vocabularies for dynamic linking. IEEE Internet Computing, 12(3), 32-39. DOI: 10.1109/MIC.2008.68. Publication link: 718da015-23c7-42e2-a809-fe637b15deda
  • Bechhofer, S., Jupp, S., Bechofer, S., & Stevens, R. (2008). A flexible API and editor for SKOS. Poster session presented at 7th International Semantic Web Conference, ISWC 2008, Karlsruhe, .. Publication link: 56eaa80e-a021-48a9-b6a0-a662d17444f0
  • Iannone, L., {Egaña}, M., Rector, A., Stevens, R., Dolbear, C. (Ed.), Ruttenberg, A. (Ed.), & Sattler, U. (Ed.) (2008). Augmenting the Expressivity of the Ontology Pre-Processor Language. In C. Dolbear, A. Ruttenberg, & U. Sattler (Eds.), Proceedings of the 5th International workshop on OWL Experiences and Directions 2008 (OWLED'08) Collocated with the 7th International Semantic Web Conference ISWC'08. (Vol. 432). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 53e0cef6-992c-45c6-aab5-1bd48ea795fb
  • Rector, A., Stevens, R., Drummond, N., Dolbear, C. (Ed.), Ruttenberg, A. (Ed.), & Sattler, U. (Ed.) (2008). What Causes Pneumonia? The Case for a Standard Semantics for ``may'' in OWL. In C. Dolbear, A. Ruttenberg, & U. Sattler (Eds.), Proceedings of the 5th OWLED Workshop on OWL: Experiences and Directions, collocated with the 7th International Semantic Web Conference (ISWC'08). (Vol. 432). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: ff2e73cd-0086-4445-9b09-3d09824c01bc
  • Aranguren, M. E., Antezana, E., Kuiper, M., & Stevens, R. (2008). Ontology design patterns for bio-ontologies: A case study on the cell cycle ontology. BMC Bioinformatics, 9(5), [S1]. DOI: 10.1186/1471-2105-9-S5-S1. Publication link: ae18625e-3e87-4f4a-8b53-17d66e464534
  • Diallo, G., Kostkova, P., Jawaheer, G., Jupp, S., & Stevens, R. (2008). Process of building a vocabulary for the infection domain. In Proceedings - IEEE Symposium on Computer-Based Medical Systems|Proc. IEEE Symp. Comput.-Based Med. Syst.. (pp. 308-313). IEEE. DOI: 10.1109/CBMS.2008.44. Publication link: b284bce3-dd9d-4649-8ac0-edc40e7dc5dc
  • Jupp, S., Stevens, R., Bechhofer, S., Yesilada, Y., Kostkova, P., Burger, A. (Ed.), ... Splendiani, A. (Ed.) (2008). Knowledge Representation for Web Navigation. In A. Burger, A. Paschke, P. Romano, & A. Splendiani (Eds.), Proceedings of the Workshop on Semantic Web Applications and Tools for the Life Sciences: (SWAT4LS'08). (Vol. 435). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: a7085c3b-8388-4dd4-b49c-2779dd96713e
  • Egaña Aranguren, M., Wroe, C., Goble, C., & Stevens, R. (2008). In situ migration of handcrafted ontologies to reason-able forms. Data and Knowledge Engineering, 66(1), 147-162. DOI: 10.1016/j.datak.2008.02.002. Publication link: aa5bd5a1-56e9-4d6c-aa01-71b1e1985f10
  • Stevens, R., Stevens, M., Dolbear, C. (Ed.), Ruttenberg, A. (Ed.), & Sattler, U. (Ed.) (2008). A Family History Knowledge Base Using {OWL} 2. In C. Dolbear, A. Ruttenberg, & U. Sattler (Eds.), Proceedings of the 5th International Workshop on OWL: Experiences and Directions 2008 (OWLEd 2008) Collocated with ISWC'08. (Vol. 432). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: a20b8c93-e350-4b70-ac3c-4a230cba6622
  • Afzal, H., Stevens, R., & Nenadic, G. (2008). Towards semantic annotation of bioinformatics services: Building a controlled vocabulary. In 3rd International Symposium on Semantic Mining in Biomedicine, SMBM 2008 - Proceedings|Int. Symp. Semantic Min. Biomed., SMBM - Proc.. (pp. 5-12). Publication link: c82e7c71-d3cf-48e0-aec0-c31029c75009
  • Goble, C., Stevens, R., Hull, D., Wolstencroft, K., & Lopez, R. (2008). Data curation + process curation = data integration + science. Briefings in Bioinformatics, 9(6), 506-517. DOI: 10.1093/bib/bbn034. Publication link: b86ba2bc-057c-47ce-888d-bc16e221ee01 | PubMed:19060304
  • Eales, J. M., Pinney, J. W., Stevens, R. D., & Robertson, D. L. (2008). Methodology capture: Discriminating between the "best" and the rest of community practice. BMC Bioinformatics, 9, [359]. DOI: 10.1186/1471-2105-9-359. Publication link: e0a1aa85-e130-4f47-9b86-5c0c89893eed | PubMed:18761740
  • Jupp, S., Bechofer, S., & Stevens, R. (2008). A flexible API and editor for SKOS. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 401). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: e9674d50-9fc8-4801-a81b-f706709224cb
  • Field, D., Garrity, G., Gray, T., Morrison, N., Selengut, J., Sterk, P., ... Wipat, A. (2008). The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology, 26(5), 541-547. DOI: 10.1038/nbt1360. Publication link: e7958c22-9daa-49e6-91ca-a13601ba0326
  • Siepen, J. A., Belhajjame, K., Selley, J. N., Embury, S. M., Paton, N. W., Goble, C. A., ... Hubbard, S. J. (2008). ISPIDER Central: an integrated database web-server for proteomics.Nucleic acids research., 36, W485-490. DOI: 10.1093/nar/gkn196. Publication link: ea3d1520-a4d3-447c-ac13-868ae5c86ae3 | PubMed:18440977
  • Jupp, S., Bechhofer, S., Stevens, R., Dolbear, C. (Ed.), Ruttenberg, A. (Ed.), & Sattler, U. (Ed.) (2008). SKOS with OWL: Don't be Full-ish! In C. Dolbear, A. Ruttenberg, & U. Sattler (Eds.), Proceedings of the 5th OWLED Workshop on OWL: Experiences and Directions 2008 (OWLED'08); Collocated with the 7th International Semantic Web Conference (ISWC'08). (Vol. 432). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: d4a1abb0-a336-407f-8fe1-11c0c179242b

2007

  • Jupp, S., Stevens, R., Bechhofer, S., Kostkova, P., & Yesilada, Y. (2007). Document navigation: Ontology or Knowledge Organisation System? In Proceedings on the 7th International Workshop on Network Tools and Applications in Biology (NETTAB'2007) - A Semantic Web for Bioinformatics: Goals, Tools, Systems, Applications.. Publication link: cbdb7cb0-e44b-46f0-a990-426dd4413490
  • Aranguren, M. E., Bechhofer, S., Lord, P., Sattler, U., & Stevens, R. (2007). Understanding and using the meaning of statements in a bio-ontology: Recasting the Gene Ontology in OWL. BMC Bioinformatics, 8, [57]. DOI: 10.1186/1471-2105-8-57. Publication link: 9de5d804-c7ca-4207-b2f0-891fab4a9272
  • Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., ... Brass, A. (2007). A systematic strategy for the discovery of candidate genes responsible for phenotypic variation. In BMC Bioinformatics|BMC Bioinform.. (Vol. 8). BioMed Central. DOI: 10.1186/1471-2105-8-S8-P7. Publication link: a2291aa7-c866-40b4-9851-83d29d04301b
  • Ure, J., Procter, R., Martone, M., Porteous, D., Lloyd, S., Lawrie, S., ... Wardlaw, J. (2007). Data integration in eHealth: A domain/disease specific roadmap. In Studies in Health Technology and Informatics|Stud. Health Technol. Informatics. (Vol. 126, pp. 144-153). Publication link: 568b4750-140e-4c81-a232-ca64197bfdc5
  • Stevens, R., Zhao, J., & Goble, C. (2007). Using provenance to manage knowledge of In Silico experiments. Briefings in Bioinformatics, 8(3), 183-194. DOI: 10.1093/bib/bbm015. Publication link: 75956d19-97ec-4ce7-8dc5-f418c27ed291
  • Wolstencroft, K., Alper, P., Hull, D., Wroe, C., Lord, P. W., Stevens, R. D., & Goble, C. A. (2007). The myGrid ontology: Bioinformatics service discovery. International Journal of Bioinformatics Research and Applications, 3(3), 303-325. DOI: 10.1504/IJBRA.2007.015005. Publication link: 702df929-f95b-4fb9-ae27-28e4d163e31f
  • Jay, C., Stevens, R., Glencross, M., Chalmers, A., & Yang, C. (2007). How people use presentation to search for a link: Expanding the understanding of accessibility on the Web. Universal Access in the Information Society, 6(3), 307-320. DOI: 10.1007/s10209-007-0089-5. Publication link: 6fc04ccc-bca7-4751-8924-956b73accce6
  • Stevens, R. (2007). A Day in the Life of A Disabled Scientist - Sightless in Science. The Biochemist, 29(3). . Publication link: 99f6fa81-ea13-4c5c-9779-d45e7390211a
  • Luciano, J. S., & Stevens, R. D. (2007). E-Science and biological pathway semantics. BMC Bioinformatics, 8(3), [S3]. DOI: 10.1186/1471-2105-8-S3-S3. Publication link: 94ca87bb-77b8-4bfd-8499-f7bfe05e1551
  • Stevens, R., Egaña Aranguren, M., Wolstencroft, K., Sattler, U., Drummond, N., Horridge, M., & Rector, A. (2007). Using OWL to model biological knowledge. International Journal of Human Computer Studies, 65(7), 583-594. DOI: 10.1016/j.ijhcs.2007.03.006. Publication link: 8aa9f75f-1aaf-4463-8a54-ce77dd0dee3c
  • Wolstencroft, K., Stevens, R., Haarslev, V., Baker, C. J. O. (Ed.), & Cheung, K. (Ed.) (2007). Applying OWL Reasoning to Genomic Data. In Semantic Web : Revolutionizing Knowledge Discovery in the Life Sciences. (pp. 225-248). Springer Verlag. DOI: 10.1007/978-0-387-48438-9_12. Publication link: 7bc17e73-e7c7-4e58-b667-767cb8525479
  • Gibson, A., Wolstencroft, K., & Stevens, R. (2007). Promotion of ontological comprehension: Exposing terms and metadata with web 2.0. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 273). Publication link: 805d7f8f-b8da-4643-940a-efac78c56d31
  • Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., ... Brass, A. (2007). A systematic strategy for the discovery of candidate genes responsible for phenotypic variation. BMC Bioinformatics, 8(8), [P7]. DOI: 10.1186/1471-2105-8-S8-P7. Publication link: 1d07761a-c3d6-4d1d-a828-65a853fde198
  • Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., ... Brass, A. (2007). A systematic strategy for large-scale analysis of genotype-phenotype correlations: Identification of candidate genes involved in African trypanosomiasis. Nucleic acids research., 35(16), 5625-5633. DOI: 10.1093/nar/gkm623. Publication link: 1a36fd2d-eb2c-41a9-a0dd-d82027a6999e | PubMed:17709344
  • Jupp, S., Stevens, R., Bechhofer, S., Kostkova, P., & Yesilada, Y. (2007). Converting Ontologies to Knowledge Organisation Systems for Document Navigation. In Bio-ontologies SIG workshop.. Publication link: 207d2b4f-a35c-42ef-a08e-c3e570b2ba01
  • Oinn, T., Li, P., Kell, D. B., Goble, C., Goderis, A., Greenwood, M., ... Zhao, J. (2007). Taverna/myGrid: Aligning a workflow system with the life sciences community. In Workflows for e-Science: Scientific Workflows for Grids|Workflows for e-Science: Sci. Workflows for Grids. (pp. 300-319). Springer London. DOI: 10.1007/978-1-84628-757-2_19. Publication link: 26902e40-c134-4c81-8223-b26d1c89802c
  • Brenchley, R., Tariq, H., McElhinney, H., Szöor, B., Huxley-Jones, J., Stevens, R., ... Tabernero, L. (2007). The TriTryp phosphatome: Analysis of the protein phosphatase catalytic domains. BMC Genomics, 8, [434]. DOI: 10.1186/1471-2164-8-434. Publication link: 04aab3db-1983-408d-913d-3a894b718f10
  • De Roure, D., Goble, C., & Stevens, R. (2007). Designing themyexperiment virtual research environment for the social sharing of workflows. In Proceedings - e-Science 2007, 3rd IEEE International Conference on e-Science and Grid Computing|Proc. - e-Sci. - IEEE Int. Conf. on e-Sci. Grid Comput.. (pp. 603-610). IEEE. DOI: 10.1109/E-SCIENCE.2007.29. Publication link: 38175ff6-9524-483a-8b16-4c21648465fd

2006

  • Oinn, T., Greenwood, M., Addis, M., Alpdemir, M. N., Ferris, J., Glover, K., ... Wroe, C. (2006). Taverna: Lessons in creating a workflow environment for the life sciences. Concurrency and Computation: Practice & Experience, 18(10), 1067-1100. DOI: 10.1002/cpe.993. Publication link: a3f97f75-2703-4824-84b8-2c280d5c002f
  • Whetzel, P. L., Brinkman, R. A., Causton, H. C., Fan, L., Field, D., Fostel, J., ... Wood, A. (2006). Development of FuGO: An ontology for functional genomics investigations. OMICS : A Journal of Integrative Biology, 10(2), 199-204. DOI: 10.1089/omi.2006.10.199. Publication link: a571e456-cb3e-41a4-bd23-5449513018c1
  • Bechhofer, S. K., Stevens, R. D., & Lord, P. W. (2006). GOHSE: Ontology driven linking of biology resources. Web Semantics, 4(3), 155-163. DOI: 10.1016/j.websem.2005.09.003. Publication link: a9e31bbc-2c28-4d14-a72f-90f9cdc44eac
  • Drummond, N., Rector, A., Stevens, R., Moulton, G., Horridge, M., Wang, H. H., & Seidenberg, J. (2006). Putting OWL in order: Patterns for sequences in OWL. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 216). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: afafed7b-9548-4d2f-9546-36840f394ad8
  • Schroeder, M., Burger, A., Kostkova, P., Stevens, R., Haberman, B., & {Dieng-Kuntz}, R. (2006). From a Service-based eScience Infrastructure to a Semantic Web for the Life Sciences: The Sealife Project. In Proceedings of the Workshop on Network Tools and Applications in Biology, NETTAB 2006. (pp. 10-13). Publication link: b05cf813-5f44-42f5-9522-1bf4e071e183
  • Horridge, M., Drummond, N., Goodwin, J., Rector, A., Stevens, R., & Wang, H. H. (2006). The manchester OWL syntax. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 216). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: c223d985-33d9-45a4-8ff5-631ebc20a62f
  • Jay, C., Stevens, R., Glencross, M., & Chalmers, A. (2006). How people use presentation to search for a link: Expanding the understanding of accessibility on the web. In ACM International Conference Proceeding Series|ACM Int. Conf. Proc. Ser.. (Vol. 134, pp. 113-120). ACM. DOI: 10.1145/1133219.1133241. Publication link: d5c043b8-ca5e-4103-9c41-853d4f0809c6
  • Hull, D., Wolstencroft, K., Stevens, R., Goble, C., Pocock, M. R., Li, P., & Oinn, T. (2006). Taverna: A tool for building and running workflows of services. Nucleic acids research., 34, W729-W732. DOI: 10.1093/nar/gkl320. Publication link: d9b23169-1b3e-46e9-927d-7c46be4f11f6 | PubMed:16845108
  • Bodenreider, O., & Stevens, R. (2006). Bio-ontologies: Current trends and future directions. Briefings in Bioinformatics, 7(3), 256-274. DOI: 10.1093/bib/bbl027. Publication link: cbc1127e-2df9-4cc2-a116-eba3cac1669b
  • Stevens, R., Lord, P., & Gibson, A. (2006). Something nasty in the woodshed: The public knowledge model. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 216). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: ec642e00-9ce8-40b1-8dc6-c92cb7982df0
  • Castro, A. G., Rocca-Serra, P., Stevens, R., Taylor, C., Nashar, K., Ragan, M. A., & Sansone, S. A. (2006). The use of concept maps during knowledge elicitation in ontology development processes - The nutrigenomics use case. BMC Bioinformatics, 7, [267]. DOI: 10.1186/1471-2105-7-267. Publication link: 95157e53-2285-4900-9eea-4428dcb1acc9
  • Hull, D., Zolin, E., Bovykin, A., Horrocks, I., Sattler, U., & Stevens, R. (2006). Deciding semantic matching of stateless services. In Proceedings of the National Conference on Artificial Intelligence|Proc Natl Conf Artif Intell. (Vol. 2, pp. 1319-1324). AAAI Press. . Publication link: 8bb75356-0f6b-4ac7-8b30-c06276588400
  • Stevens, R., Bodenreider, O., Lussier, Y. A., Altman, R. B. (Ed.), Murray, T. (Ed.), Klein, T. E. (Ed.), ... Hunter, L. (Ed.) (2006). Semantic Web for Life Sciences: Session Introduction. In R. B. Altman, T. Murray, T. E. Klein, A. K. Dunker, & L. Hunter (Eds.), {Proceedings of the Pacific Symposium on Biocomputing (Biocomputing 2006)}. (Vol. 11, pp. 112-115). World Scientific Publishing. . Publication link: 74238ee6-5f09-4521-939e-b7731cf3b68d
  • Goble, C., Wolstencroft, K., Goderis, A., Hull, D., Zhao, J., Alper, P., ... Cheung, K. (Ed.) (2006). Knowledge Discovery for Biology with Tavema: Producing and Consuming Semantics in the Web of Science. In Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences. (pp. 355-395). Springer Verlag. DOI: 10.1007/978-0-387-48438-9_17. Publication link: 6f067b67-34d1-418a-b776-90d336d184f0
  • Stevens, R., Yesilada, Y., Schroeder, M., Burger, A., Kostkova, P., Habermann, B., & Dieng-Kuntz, R. (2006). A Semantic Browser for a Web of Biomedicine. In Health Care and Life Sciences Workshop.. Publication link: 65c4cc62-97f4-432f-a38d-d62c5081f929
  • Morrison, N., Wood, A. J., Hancock, D., Shah, S., Hakes, L., Gray, T., ... Field, D. (2006). Annotation of environmental OMICS data: Application to the transcriptomics domain. OMICS : A Journal of Integrative Biology, 10(2), 172-178. DOI: 10.1089/omi.2006.10.172. Publication link: 5b7b0a30-0c2e-4eee-99e0-909a542abf96 | PubMed:16901223
  • Stevens, R., Musen, M. A., Lewis, S., & Smith, B. (2006). Wrestling with SUMO and bio-ontologies [1]. Nature Biotechnology, 24(1), 21. DOI: 10.1038/nbt0106-21a. Publication link: 3de8304e-319e-44bd-91f5-eeea2dc117fb
  • Wang, Y., Sure, Y., Stevens, R., & Rector, A. (2006). Knowledge elicitation plug-in for Protégé: Card sorting and laddering. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 4185, pp. 552-565). (Lecture Notes in Computer Science LNCSNCS). Springer Verlag. DOI: 10.1007/11836025_53. Publication link: 340d3620-fbbe-464f-9dc6-4405f4cfde40
  • McEntire, R., Stevens, R., Markel, S. (Ed.), & Leon, D. (Ed.) (2006). Ontologies. In {{\emph{In Silico}}Technology in Drug Target Identification and Validation}. (Drug Discovery Series). CRC Press. . Publication link: 31e51b99-54e4-460c-979d-8d185bf3c8d5
  • Wolstencroft, K., Lord, P., Tabernero, L., Brass, A., & Stevens, R. (2006). Protein classification using ontology classification. Bioinformatics, 22(14), e530-e538. DOI: 10.1093/bioinformatics/btl208. Publication link: 2091a780-9717-40f6-b0f2-537ab44b23e3 | PubMed:16873517
  • Brown, A., Stevens, R. D., & Pettifer, S. (2006). Audio Representation of Graphs: A Quick Look. In Proceedings of the 12th International Conference on Auditory Displays 2006.. Publication link: 22f347c8-fea0-4d76-be79-167a5c0a2765
  • Zhao, J., Goble, C., & Stevens, R. (2006). An identity crisis in the life sciences. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 4145, pp. 254-269). (Lecture Notes in Computer Science). Springer Verlag. DOI: 10.1007/11890850_26. Publication link: 1c991476-b59c-47ce-a597-84227b0679f8
  • Belhajjame, K., Embury, S. M., Paton, N. W., Stevens, R., & Goble, C. A. (2006). Automatic annotation of web services based on workflow definitions. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 4273, pp. 116-129). (Lecture Notes in Computer Science). Springer Verlag. DOI: 10.1007/11926078_9. Publication link: 18c50eda-9a6b-4eef-833c-97f96de29fee

2005

  • Harper, S., Khan, G., & Stevens, R. (2005). Design Checks for Java Accessibility. In Accessible Design in the Digital World. British Computer Society. . Publication link: c2a891c4-6aaf-42cd-8695-d729a25713fc
  • Plessers, P., Casteleyn, S., Yesilada, Y., Troyer, O. D., Stevens, R., Harper, S., ... Hagino, T. (Ed.) (2005). Accessibility: a web engineering approach. In A. Ellis, & T. Hagino (Eds.), {Proceedings of the 14th international conference on World Wide Web (WWW'05)}. (pp. 353-362). ACM. DOI: 10.1145/1060745.1060799. Publication link: bbc5f157-6446-4a88-901d-d22f04e1ebe8
  • Stevens, R., Lord, P., Hull, D., & Lengauer, T. (Ed.) (2005). Using Distributed Data and Tools in bioinformatics Applications. In Bioinformatics - From Genomes to Therapies; Volume 3. (pp. 1627-1649). Wiley-VCH. . Publication link: be9025ca-ebce-4002-9c10-25bf4c0b4c9e
  • Bechhofer, S. K., Stevens, R. D., & Lord, P. W. (2005). Ontology driven dynamic linking of biology resources. In Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005|Proc. Pac. Symp. Biocomputing, PSB. (pp. 79-90). World Scientific Publishing. . Publication link: b82a714c-2273-4c8c-a5fc-f1f1f5a56acf
  • Flanagan, K., Stevens, R., Pocock, M., Lee, P., & Wipat, A. (2005). Ontology for Genome Comparison and Genomic Rearrangements. Comparative and Functional Genomics, 5(6-7), 537-544. DOI: 10.1002/cfg.436.. Publication link: a997abfb-d88c-4dc8-b2d9-d9508c4e5747
  • Harper, S., Yesilada, Y., Goble, C., & Stevens, R. D. (2005). Web Authoring for Accessibility: An Ontological View. Journal of Web Semantics. . Publication link: d2a782bd-c538-4d46-ace5-5468cf847ea0
  • Knublauch, H., Horridge, M., Musen, M., Rector, A., Stevens, R., Drummond, N., ... Wang, H. (2005). The Protégé OWL experience. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 188). ({CEUR Workshop Proceedings}). {CEUR-WS.org}. . Publication link: da74d98b-50a2-4e9f-a7c7-543447ba36eb
  • Lacroix, Z., Ludaescher, B., Stevens, R., & Lengauer, T. (Ed.) (2005). Integrating Biological Databases. In Bioinformatics - From Genomes to Therapies. (pp. 1525-1572). Wiley-VCH. . Publication link: fcbd8786-af96-47ef-a51e-6721404d5759
  • Wolstencroft, K., Brass, A., Horrocks, I., Lord, P., Sattler, U., Turi, D., & Stevens, R. (2005). A little semantic web goes a long way in biology. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 3729, pp. 786-800). (Lecture Notes in Computer Science). Springer Verlag. DOI: 10.1007/11574620_56. Publication link: 2c531a94-6813-47f9-a7f5-db16d6e6a01f
  • Wroe, C., Stevens, R., & Lengauer, T. (Ed.) (2005). Ontologies for molecular biology. In Bioinformatics - From Genomes to Therapies. (pp. 1061-1085). Wiley-VCH. . Publication link: 1c0f1220-468c-4601-8ace-a70b27f88fcf
  • Wolstencroft, K., McEntire, R., Stevens, R., Tabernero, L., & Brass, A. (2005). Constructing ontology-driven protein family databases. Bioinformatics, 21(8), 1685-1692. DOI: 10.1093/bioinformatics/bti158. Publication link: 1a7b039b-e66d-4303-8832-9581bb0641cc | PubMed:15564301
  • Lord, P., Stevens, R., Butler, J. A., & McEntire, R. (2005). The eighth annual bio-ontologies meeting.PLoS Computational Biology, 1(7), [e77]. DOI: 10.1371/journal.pcbi.0010077. Publication link: 9894d46d-3074-475e-ab95-060e8f0868f0
  • Wolstencroft, K. J., Stevens, R., Tabernero, L., & Brass, A. (2005). PhosphaBase: An ontology-driven database resource for protein phosphatases. Proteins: Structure, Function and Bioinformatics, 58(2), 290-294. DOI: 10.1002/prot.20325. Publication link: 533928be-d2ba-4ebc-bec0-5702a9077034 | PubMed:15558746
  • Hull, D., Stevens, R., & Lord, P. (2005). Describing Web Services for User-Oriented Retrieval. In {Proceedings of W3C Workshop on Frameworks for Semantics in Web Services}. (pp. 9-10). Publication link: 52cd429e-40f2-495a-b0cb-0b350f91005a
  • Goble, C., Stevens, R., & Bechhofer, S. (2005). The semantic web and knowledge grids. Drug Discovery Today: Technologies, 2(3), 225-233. DOI: 10.1016/j.ddtec.2005.08.005. Publication link: 5669d2d0-1942-49c5-92a6-db75e0fc6fa8
  • Wolstencroft, K., Oinn, T., Goble, C., Ferris, J., Wroe, C., Lord, P., ... Stevens, R. (2005). Panoply of utilities in Taverna. In Proceedings - First International Conference on e-Science and Grid Computing, e-Science 2005|Proc. First Int. Conf. Sci. Grid Comput.. (Vol. 2005, pp. 156-162). IEEE Computer Society. DOI: 10.1109/E-SCIENCE.2005.65. Publication link: 623fee0f-65df-4c7a-9ca9-034699a0349d

2004

  • Zhao, J., Goble, C., Stevens, R., Bechhofer, S., & Bouzeghoub, M. (Ed.) (2004). Semantically Linking and Browsing Provenance Logs for e-Science. In M. Bouzeghoub, C. A. Goble, V. Kashyap, & S. Spaccapietra (Eds.), First International IFIP Conference on Semantics of a Networked World. Semantics for Grid Databases (ICSNW 2004). (Vol. 3226, pp. 158-176). (LNCS). Springer Verlag. DOI: 10.1007/978-3-540-30145-5_10. Publication link: edb6e06a-d054-4b8a-9e1d-ae2ca0110eda
  • Yesilada, Y., Stevens, R., Goble, C., & Hussein, S. (2004). Rendering tables in audio: The interaction of structure and reading styles. In ASSETS 2004 - The Sixth International ACM SIGACCESS Conference on Computers and Accessibility|ASSETS Sixth Int. ACM SIGACCESS Conf. Comput. Accessibility. (pp. 16-23). ACM. . Publication link: e18296e3-bc80-4f82-82e3-17c8dbe1a29f
  • Brown, A., Pettifer, S., & Stevens, R. (2004). Evaluation of a non-visual molecule browser. In ASSETS 2004 - The Sixth International ACM SIGACCESS Conference on Computers and Accessibility|ASSETS Sixth Int. ACM SIGACCESS Conf. Comput. Accessibility. (pp. 40-47). ACM Press. DOI: 10.1145/1028630.1028639. Publication link: a9e6c613-3981-4ad1-85ef-5d1a57ed386f
  • Stevens, R., McEntire, R., Goble, C., Greenwood, M., Zhao, J., Wipat, A., & Li, P. (2004). myGrid and the drug discovery process. Drug Discovery Today: BIOSILICO, 2(4), 140-148. DOI: 10.1016/S1741-8364(04)02412-6. Publication link: a983b041-d789-40c4-a58f-5cefb294b1b2
  • Stevens, R., Wroe, C., Lord, P. W., Goble, C., Staab, S. (Ed.), & Studer, R. (Ed.) (2004). Ontologies in Bioinformatics. In Handbook on Ontologies. (pp. 635-658). (International Handbooks on information Systems). Springer Verlag. . Publication link: a84afeca-5ec7-4705-b196-40f8043c532c
  • Stevens, R. D., Tipney, H. J., Wroe, C. J., Oinn, T. M., Senger, M., Lord, P. W., ... Tassabehji, M. (2004). Exploring Williams-Beuren syndrome using myGrid. Bioinformatics, 20(1), 303-310. DOI: 10.1093/bioinformatics/bth944. Publication link: adeeeb7e-2a25-4a0a-8b6b-39601ed33dbb | PubMed:15262813
  • Bada, M., Turi, D., McEntire, R., & Stevens, R. (2004). Using reasoning to guide annotation with gene ontology terms in goat. SIGMOD Record, 33(2), 27-32. DOI: 10.1145/1024694.1024699. Publication link: f2f4bf69-30d5-46a1-9372-1d07eb7b2442
  • Yesilada, Y., Stevens, R., Goble, C., & Hussein, S. (2004). Rendering tables in audio: The interaction of structure and reading styles. In ASSETS 2004 - The Sixth International ACM SIGACCESS Conference on Computers and Accessibility|ASSETS Sixth Int. ACM SIGACCESS Conf. Comput. Accessibility. (pp. 16-23). {ACM}. DOI: 10.1145/1028630.1028635. Publication link: fde27f9a-defe-4952-9fc7-b168a94acc54
  • Stevens, R. D., Tipney, H. J., Wroe, C. J., Oinn, T. M., Senger, M., Lord, P. W., ... Tassabehji, M. (2004). Exploring Williams-Beuren syndrome using myGrid. In Bioinformatics|Bioinformatics. (Vol. 20, pp. 303-310). DOI: 10.1093/bioinformatics/bth944. Publication link: ff34254c-8bdc-4966-b18b-b1453c338489
  • Yesilada, Y., Harper, S., Goble, C., & Stevens, R. (2004). Dante: Annotation and transformation of Web pages for visually impaired users. In Thirteenth International World Wide Web Conference Proceedings, WWW2004|Thirteenth Int. World Wide Web Conf. Proc. WWW. (pp. 1222-1223). ACM. DOI: 10.1145/1013367.1013540. Publication link: 58cfac3e-5edf-46de-aa1f-442ed17cd328
  • Hull, D., Stevens, R., Lord, P., Wroe, C., Goble, C., Domingue, J. (Ed.), ... Enrico, M. (Ed.) (2004). Treating Shimantic Web Syndrome with Ontologies. In J. Domingue, L. Cabral, & M. Enrico (Eds.), Proceedings of the First Advanced Knowledge Technologies Workshop on Semantic Web Services (AKT-SWS04) KMi,. (Vol. 122). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 67b6e297-820f-4589-aca3-ce00f900080f
  • Harper, S., Yesilada, Y., Goble, C., & Stevens, R. (2004). How much is too much in a hypertext link investigating context and preview - A formative evaluation. In Proceedings of the ACM Conference on Hypertext|Proc ACM Conf Hypertext. (pp. 116-125). {ACM}. DOI: 10.1145/1012807.1012843. Publication link: 6e31ccc1-85f8-4440-848d-891c137b6f4c
  • Bada, M., Stevens, R., Goble, C., Gil, Y., Ashburner, M., Blake, J. A., ... Lewis, S. (2004). A short study on the success of the Gene Ontology. Web Semantics, 1(2), 235-240. DOI: 10.1016/j.websem.2003.12.003. Publication link: 96942901-dda5-48cd-bae9-986d80c744ce
  • Zhao, J., Stevens, R., Wroe, C., Greenwood, M., & Goble, C. (2004). The Origin and History of \emph{In Silico} Experiments. In Proceedings of the Second UK e-Science All Hands Meeting. (pp. 1065-1068). EPSRC. . Publication link: 7fe58992-72a0-4796-8899-4c47fcf917b2
  • Zhao, J., Goble, C., & Stevens, R. (2004). Semantic Web applications to e-Science in silico experiments. In Thirteenth International World Wide Web Conference Proceedings, WWW2004|Thirteenth Int. World Wide Web Conf. Proc. WWW. (pp. 1016-1017). ACM. DOI: 10.1145/1013367.1013437. Publication link: 499d7fd3-8093-4afc-9e4e-458f6d931b40
  • Brown, A., Stevens, R., & Pettifer, S. (2004). Issues in the non-visual presentation of graph based diagrams. In E. Banissi, K. Boner, C. Chen, M. Dastbaz, G. Clapworthy, A. Faiola, E. Izquierdo, C. Maple, J. Roberts, ... C. Moore (Eds.), Proceedings of the International Conference on Information Visualization|Proc. Int. Conf. Inf. Visual.. (Vol. 8, pp. 671-676). IEEE. DOI: 10.1109/IV.2004.1320214. Publication link: 326e88ca-1bd1-4cce-b530-f54490753807
  • Zhao, J., Wroe, C., Goble, C., Stevens, R., Quan, D., & Greenwood, M. (2004). Using semantic web technologies for representing E-science provenance. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 3298, pp. 92-106). (Lecture Notes in Computer Science). Springer Verlag. . Publication link: 2efc025b-c17c-4cdf-b370-411d01501797
  • Yesilada, Y., Harper, S., Goble, C., Stevens, R., Koch, N. (Ed.), Fraternali, P. (Ed.), & Wirsing, M. (Ed.) (2004). Screen Readers Cannot See: Ontology Based Semantic Annotation for Visually Impaired Web Travellers. In N. Koch, P. Fraternali, & M. Wirsing (Eds.), Proceedings of the 4th International Conference on Web Engineering (ICWE'04). (Vol. 3140, pp. 445-458). (Lecture Notes in Computer Science (LNCS)). Springer Verlag. DOI: 10.1007/978-3-540-27834-4_55. Publication link: 1e80d988-27f3-489f-a707-3cdad45ca94c
  • Zhao, J., Goble, C. (Ed.), Stevens, R., Bechhofer, S., Bouzeghoub, M. (Ed.), Kashyap, V. (Ed.), & Spaccapietra, S. (Ed.) (2004). Semantically Linking and Browsing Provenance Logs for E-science. In M. Bouzeghoub, C. A. Goble, V. Kashyap, & S. Spaccapietra (Eds.), ICSNW. (Vol. 3226, pp. 158-176). (Lecture Notes in Computer Science). Springer Verlag. . Publication link: 01d3e605-c456-4b11-8bb1-36a37aa6dd64

2003

  • Stevens, R., Goble, C., Paton, N. W., Bechhofer, S., Ng, G., Baker, P., ... Critchlow, T. (Ed.) (2003). Complex Query Formulation Over Diverse Information Sources in TAMBIS. In Bioinformatics: Managing Scientific Data. (pp. 189-223). Morgan Kaufmann. . Publication link: 078853b7-313c-4e74-9d76-0755709524b8
  • Harper, S., Goble, C., Stevens, R., Catarci, T. (Ed.), Mercella, M. (Ed.), Mylopoulos, J. (Ed.), & Orlowska, M. E. (Ed.) (2003). Traversing the Web: Mobility Heuristics for Visually Impaired Surfers. In T. Catarci, M. Mercella, J. Mylopoulos, M. E. Orlowska, T. Catarci, M. Mercella, J. Mylopoulos, ... M. E. Orlowska (Eds.), Proceedings of the Fourth International Conference on Web Information Systems Engineering, 2003. (WISE'03).. (pp. 200-208). IEEE. DOI: 10.1109/WISE.2003.1254483. Publication link: 030b7bf3-e32e-42d5-9750-cc8740f9372b
  • Stevens, R. D., Robinson, A. J., & Goble, C. A. (2003). myGrid: personalised bioinformatics on the information grid.Bioinformatics, 19, 302-304. DOI: 10.1093/bioinformatics/btg1041. Publication link: 22d7c83c-0c69-4f36-b4db-4bac1bf40158
  • Harper, S., Goble, C., Stevens, R., Yesilada, Y., King, I. (Ed.), & Máray, T. (Ed.) (2003). Towel: Experiences of Augmenting the Web with Journey Knowledge. In I. King, & T. Máray (Eds.), Proceedings of the Twelfth International World Wide Web Conference - Posters, (WWW'03).. Publication link: 3dc1ea20-bc80-479b-92cc-f4244f223c8e
  • Yesilada, Y., Stevens, R., & Goble, C. (2003). A foundation for tool based mobility support for visually impaired web users. In Proceedings of the 12th International Conference on World Wide Web, WWW 2003|Proc. Int. Conf. World Wide Web, WWW. (pp. 422-430). DOI: 10.1145/775152.775212. Publication link: 44642d3d-5d2d-4f41-8df4-8fb356a53d6d
  • Lord, P. W., Stevens, R. D., Brass, A., & Goble, C. A. (2003). Investigating semantic similarity measures across the gene ontology: The relationship between sequence and annotation. Bioinformatics, 19(10), 1275-1283. DOI: 10.1093/bioinformatics/btg153. Publication link: 7aafe560-8128-4bf6-9136-250cd6605f2d | PubMed:12835272
  • Wroe, C. J., Stevens, R., Goble, C. A., & Ashburner, M. (2003). A methodology to migrate the gene ontology to a description logic environment using DAML+OIL. In Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|Pac Symp Biocomput. (pp. 624-635). Publication link: 80a01844-fb06-4b21-af39-4fb9908025b5
  • Lord, P., Wroe, C., Stevens, R., Goble, C., Miles, S., Moreau, L., ... Papay, J. (2003). Semantic and Personalised Service Discovery. In Proceedings of the UK e-Science Programme All Hands Conference. (pp. 787-794). {EPSRC }. . Publication link: 8e7a8e7e-1763-442c-a778-e7f4b27077c7
  • Lord, P. W., Stevens, R. D., Brass, A., & Goble, C. A. (2003). Semantic similarity measures as tools for exploring the gene ontology. In Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|Pac Symp Biocomput. (pp. 601-612). Publication link: 66e9d708-05ce-4840-9c0c-1ae69b0c4616 | PubMed:12603061
  • Greenwood, M., Goble, C., Stevens, R., Zhao, J., Addis, M., Marvin, D., ... Watson, P. (2003). Provenance of e-Science Experiments - Experience from Bioinformatics. In Proceedings of the UK e-Science Programme All Hands Conference. (pp. 223-226). {EPSRC}. . Publication link: 711cd4ba-1f9c-45ec-930a-9c2f3c150c4f
  • Stevens, R., Glover, K., Greenhalgh, C., Jennings, C., Pearce, S., Li, P., ... Wipat, A. (2003). Performing \emph{In Silico} Experiments on the Grid: A Users' Perspective. In Proceedings of the UK e-Science Programme All Hands Conference. (pp. 43-50). Publication link: 5a22b82b-48a2-495f-a395-5e021c32851e
  • Wroe, C., Stevens, R., Goble, C., Roberts, A., & Greenwood, M. (2003). A suite of DAML+OIL ontologies to describe bioinformatics web services and data. International Journal of Cooperative Information Systems, 12(2), 197-224. DOI: 10.1142/S0218843003000711. Publication link: 5e5f16a8-2703-4c10-9af3-e787d915469a
  • Goble, C., Wroe, C., Stevens, R., & myGrid Consortium (2003). The {my}Grid Project: Services, Architecture and Demonstrator. In Proceedings of the UK e-Science Programme All Hands Conference. (pp. 595-603). {EPSRC} - e-Science Pilot Project myGrid. . Publication link: c7382096-7d8c-4e68-a991-82e09f537139
  • Bada, M., McEntire, R., Wroe, C., & Stevens, R. (2003). GOAT: The Gene Ontology Annotation Tool. In Proceedings of the UK e-Science Programme All Hands Conference. (pp. 514-519). Publication link: c6355802-bd9c-422d-8d1f-ca55dec14ebe
  • Goble, C., Pettifer, S., Stevens, R., Greenhalgh, C., Foster, I. (Ed.), & Kesselman, C. (Ed.) (2003). Knowledge Integration: \emph{In Silico} Experiments in Bioinformatics. In The Grid 2: Blueprint for a New Computing Infrastructure. (Second ed., pp. 121-134). Morgan Kaufmann Publishers. . Publication link: c1d290dd-833f-41ea-b628-640fbb85a030
  • Yesilada, Y., Harper, S., Goble, C., & Stevens, R. (2003). Ontology Based Semantic Annotation for Enhancing Mobility Support. In Proceedings of the K-CAP 2003 Workshop on Knowledge Markup and Semantic Annotation (Semannot'2003). (Vol. 101). ({CEUR Workshop Proceedings}). {CEUR-WS.org}. . Publication link: a8d78bcf-5d17-45a4-b74f-7b80cc12ceb6
  • Lord, P., Wroe, C., Stevens, R., Goble, C., Miles, S., Moreau, L., ... Ye, Y. (Ed.) (2003). Semantic and Personalised Service Discovery. In W. K. Cheung, & Y. Ye (Eds.), Proceedings of Workshop on Knowledge Grid and Grid Intelligence (KGGI'03), in conjunction with 2003 IEEE/WIC International Conference on Web Intelligence/Intelligent Agent Technology. (pp. 100-107). Publication link: ab0ce049-e381-4aa6-8feb-51a6ef677fc4
  • Stevens, R. D., Robinson, A. J., & Goble, C. A. (2003). myGrid: personalised bioinformatics on the information grid. In Bioinformatics (Oxford, England)|Bioinformatics. (Vol. 19, pp. 302-304). Publication link: d63e8fe4-59bb-4b66-919b-828368416372
  • Zhao, J., Goble, C., Greenwood, M., Wroe, C., & Stevens, R. (2003). Annotating, Linking and Browsing Provenance Logs for {e-Science}. In {Proceedings of the Workshop on Semantic Web Technologies for Searching and Retrieving Scientific Data, Colocated with the 2nd International Semantic Web Conference (ISWC'03)}. (Vol. 83). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: d72da46f-4904-4c72-8a8e-343d764c0ba5
  • Stevens, R., Wroe, C., Bechhofer, S., Lord, P., Rector, A., & Goble, C. (2003). Building ontologies in DAML + OIL. Comparative and Functional Genomics, 4(1), 133-141. DOI: 10.1002/cfg.233. Publication link: d7ec0b7c-29c5-4766-ade3-9ce0523bfe9e
  • Stevens, R., Wroe, C., Lord, P., Goble, C., Staab, S. (Ed.), & Studer, R. (Ed.) (2003). Ontologies in Bioinformatics. In Handbook on Ontologies in Information Systems. (pp. 635-657). (International Handbooks on information Systems). Springer Verlag. DOI: 10.1007/978-3-540-24750-0_32. Publication link: e410d692-2ebc-4c32-ab02-44679af19a9e
  • Moreau, L., Miles, S., Goble, C., Greenwood, M., Dialani, V., Addis, M., ... Wroe, C. (2003). On the use of agents in a BioInformatics grid. In Proceedings - CCGrid 2003: 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid|Proc. - CCGrid: IEEE/ACM Int. Symp. Cluster Comput. Grid. (pp. 653-660). DOI: 10.1109/CCGRID.2003.1199429. Publication link: e8ca0007-5e64-4a64-b5dc-efb457e04d5c

2002

  • Greenwood, M., Wroe, C., Stevens, R., Goble, C., Addis, M., Matthews, B. (Ed.), ... Wilson, M. (Ed.) (2002). Position Paper: Are Bioinformaticians Doing e-Business? In B. Matthews, B. Hopgood, & M. Wilson (Eds.), Proceedings of the 2002 International Conference on EuroWeb: The Web and the GRID from e-science to e-business: (EuroWeb'02). ({EuroWeb}'02). British Computer Society (http://www.bcs.org/ewic). . Publication link: 0e501b0c-8c9f-443c-8429-ea750fbf3c0b
  • Stevens, R., Goble, C., Horrocks, I., & Bechhofer, S. (2002). Building a bioinformatics ontology using OIL. IEEE Transactions on Information Technology in Biomedicine, 6(2), 135-141. DOI: 10.1109/TITB.2002.1006301. Publication link: 3b44b67f-02c8-40b6-b00c-dca75fc64595
  • Stevens, R., Goble, C., Horrocks, I., & Bechhofer, S. (2002). Oiling the way to machine understandable bioinformatics resources. IEEE Transactions on Information Technology in Biomedicine, 6(2), 129-134. DOI: 10.1109/TITB.2002.1006300. Publication link: aeb4a7b8-7f7a-4c3c-961a-f9b28ab6308b
  • Stevens, R. (2002). Ontology based document enrichment in bioinformatics. Comparative and Functional Genomics, 3(1), 42-46. DOI: 10.1002/cfg.141. Publication link: c4589ce8-089d-4d89-813b-3250dd52990c
  • Moreau, L., Miles, S., Goble, C., Greenwood, M., Dialani, V., Addis, M., ... Wroe, C. (2002). On the Use of Agents in a BioInformatics Grid. In Network Tools and Applications in Biology (NETTAB'2002) - Agents in Bioinformatics.. Publication link: bfba4751-94a9-4679-956e-9c60b16dfad1

2001

  • Stevens, R., Goble, C. A., Baker, P., & Brass, A. (2001). {A} {C}lassification of {T}asks in {B}ioinformatics. Bioinformatics, 17(2), 180-188. DOI: 10.1093/bioinformatics/17.2.180. Publication link: e3afe530-6616-4c72-98ca-6347b7a2464e | PubMed:11238075
  • Goble, C., & Stevens, R. (2001). {M}anaging {B}iological {I}nformation {U}sing {B}iological {K}nowledge. In {NETTAB} - Network Tools and Applications in Biology {CORBA} and {XML}: Towards a Bioinformatics Integrated Network Environment.. Publication link: f285e809-a88d-4752-bf83-901dcd3b10df
  • Lord, P. W., Reich, J. R., Mitchell, A., Stevens, R., Attwood, T., & Goble, C. (2001). {PRECIS}: {A}n {A}utomated {P}ipeline for {P}roducing {C}oncise {R}eports {A}bout {P}roteins. In 2nd IEEE International Symposium on Bioinformatics and Biomedical engineering (BIBE'01). (pp. 57-64). IEEE Computer Society. DOI: 10.1109/BIBE.2001.974412. Publication link: f545c1ea-e654-4e4c-9dd6-d5affd31b179
  • Bechhofer, S., Horrocks, I., Goble, C., & Stevens, R. (2001). {OilEd}: {A} {R}eason-able {O}ntology {E}ditor for the {S}emantic {W}eb. In Proceedings of the Joint German/Austrian Conference on Artificial Intelligence: Advances in Artificial Intelligence (KI) 2001. (Vol. 2174, pp. 396-408). (LNCS). Springer Verlag. DOI: 10.1007/3-540-45422-5_28. Publication link: 7601e584-16db-428b-afcf-2fc02ebe478c
  • Harper, S., Goble, C., & Stevens, R. (2001). Prototype mobility tools for visually impaired surfers. In H. Davis, Y. Douglas, & D. G. Durand (Eds.), Proceedings of the ACM Conference on Hypertext|Proc ACM Conf Hypertext. (pp. 33-34). (HYPERTEXT '01). {ACM}. DOI: 10.1145/504216.504229. Publication link: 5196dad3-58ec-483f-bf6f-8ea9ec2e9e01
  • Harper, S., Stevens, R., & Goble, C. (2001). Web Mobility Guidelines for Visually Impaired Surfers. Journal of Research and Practice in Information Technology Special Issue on HCI, 33(1), 30-41. . Publication link: 8b54779e-a486-4ff3-a388-747fcf50e059
  • Bechhofer, S., Horrocks, I., Goble, C., & Stevens, R. (2001). {OilEd}: {A} {R}eason-able {O}ntology {E}ditor for the {S}emantic {W}eb. In Working Notes of the 2001 International Description Logics Workshop (DL-2001). (Vol. 49, pp. 1-9). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: 8df72534-91e5-4376-8d5b-5aa96a8d026c
  • Goble, C. A., Stevens, R., Ng, G., Bechhofer, S., Paton, N. W., Baker, P. G., ... Brass, A. (2001). Transparent access to multiple bioinformatics information sources. IBM Systems Journal, 40(2), 532-551. DOI: 10.1147/sj.402.0532. Publication link: 3b9daaba-293d-47c9-95db-d4e1d20f7e90
  • Stevens, R., Horrocks, I., Goble, C., & Bechhofer, S. (2001). B}uilding a {R}eason-able {B}ioinformatics {O}ntology {U}sing {OIL. In Proceedings of the IJCAI-2001 Workshop on Ontologies and Information Sharing. (pp. 81-90). Publication link: 425fdece-828c-4aff-8e51-4fc4df7afc90
  • Harper, S., Goble, C., & Stevens, R. (2001). Prototype mobility tools for visually impaired surfers. In H. Davis, Y. Douglas, & D. G. Durand (Eds.), Proceedings of the ACM Conference on Hypertext|Proc ACM Conf Hypertext. (pp. 33-34). ACM. . Publication link: 1507339f-5991-41bb-a495-dd073245b364

2000

  • Harper, S., Stevens, R., & Goble, C. (2000). Web Mobility Guidelines for Visually Impaired Surfers. Journal of Research and Practice in Information Technology Special Issue on HCI, 33(2). . Publication link: 19ac215d-8ab6-40cc-8272-e5a8b846de01
  • Goble, C., Harper, S., & Stevens, R. (2000). The travails of visually impaired web travellers. In Proceedings of the Eleventh ACM on Hypertext and Hypermedia (Hypertext 2000). (pp. 1-10). (HYPERTEXT '00). ACM. DOI: 10.1145/336296.336304. Publication link: 1abf0f35-b3c4-4808-bb72-f0e7d118f7a4
  • Stevens, R., & Miller, C. (2000). Wrapping and interoperating bioinformatics resources using CORBA.Briefings in Bioinformatics, 1(1), 9-21. . Publication link: 502605f2-34a5-4944-b102-bf78767ce24a | PubMed:11466976
  • Stevens, R., Goble, C., & Bechhofer, S. (2000). {O}ntology-based {K}nowledge {R}epresentation for {B}ioinformatics. Briefings in Bioinformatics, 1(4), 398-414. DOI: 10.1093/bib/1.4.398. Publication link: 4f103480-fc04-4c58-8569-8adb08d89f35
  • Stevens, R., Baker, P., Bechhofer, S., Ng, G., Jacoby, A., Paton, N. W., ... Brass, A. (2000). {TAMBIS}: {T}ransparent {A}ccess to {M}ultiple {B}ioinformatics {I}nformation {S}ources. Bioinformatics, 16(2), 184-186. DOI: 10.1093/bioinformatics/16.2.184. Publication link: 5f3d17d4-74c8-4b66-8bb0-f0432fd1840b | PubMed:0010842744
  • Harper, S., Stevens, R., & Goble, C. (2000). A Pilot Study to Examine the Mobility Problems of Visually Impaired Users Travelling the Web. ACM SIGCAPH: Special Interest Group on Computers {\&} the Physically Handicapped Newsletter, 68, 10-19. DOI: 10.1145/569309.569311. Publication link: f2b44bd5-f81f-44a8-aaee-e5be9be6083c
  • Stevens, R., Goble, C. A., & Bechhofer, S. (2000). Ontology-based knowledge representation for bioinformatics.Briefings in Bioinformatics, 1(4), 398-414. . Publication link: c3f5be60-33ca-4086-9a17-0f4fe11c3887
  • Stevens, R., & Miller, C. (2000). W}rapping and {I}nteroperating {B}ioinformatics {R}esources {U}sing {CORBA. Briefings in Bioinformatics, 1(1), 9-21. DOI: 10.1093/bib/1.1.9. Publication link: d12e3899-710d-4655-9b9c-0079013868a2

1999

  • Harper, S., Stevens, R., Goble, C., Vanderdonckt, J. (Ed.), & Puerta, A. (Ed.) (1999). Towel: Real World Mobility on the Web. In J. Vanderdonckt, & A. Puerta (Eds.), {Proceedings of the 3rd International Computer-Aided Design of User Interfaces II (Proceedings of the Third International Conference on Computer-Aided Design of User Interfaces}. (pp. 305-312). Kluwer Academic. . Publication link: 4518e856-9206-4c0b-9393-a731c2e84d0f
  • Stevens, R., Paton, N. W., Baker, P., Ng, G., Goble, C. A., Bechhofer, S., & Brass, A. (1999). TAMBIS online: a bioinformatics source integration tool. In Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM|Proc. Int. Conf. Sci. Stat. Database Manage. SSDBM. (pp. 280). Los Alamitos, CA, United States: IEEE. DOI: 10.1109/SSDM.1999.787647. Publication link: 3d7085d9-66b1-4207-9012-2cf09d742f1b
  • Baker, P. G., Goble, C. A., Bechhofer, S., Paton, N. W., Stevens, R., & Brass, A. (1999). An ontology for bioinformatics applications. Bioinformatics, 15(6), 510-520. DOI: 10.1093/bioinformatics/15.6.510. Publication link: 46284412-8bf7-4a9b-893d-a42975dd2f8f
  • Paton, N. W., Stevens, R., Baker, P. G., Goble, C., Bechhofer, S., Brass, A., & Ozsoyoglo, Z. M. E. A. (Ed.) (1999). {Q}uery {P}rocessing in the {TAMBIS} {B}ioinformatics {S}ource {I}ntegration {S}ystem. In Z. M. E. A. Ozsoyoglo (Ed.), Proceedings of the Eleventh International Conference on Scientific and Statistical Database Management (SSDBM). (pp. 138-147). {IEEE} Press. DOI: 10.1109/SSDM.1999.787629. Publication link: 72cc75c2-ea74-47d3-b161-d6089873ec39
  • Harper, S., Stevens, R., Goble, C., Vanderdonckt, J. (Ed.), & Puerta, A. R. (Ed.) (1999). Towel: Real World Mobility on the Web. In J. Vanderdonckt, & A. R. Puerta (Eds.), Proceedings of the Third International Conference of Computer-Aided Design of User Interfaces - Computer-Aided Design of User Interfaces II, CADUI. (pp. 305-312). Kluwer Academic. . Publication link: a188be8f-d11d-41be-9349-38a428b9dd80
  • Paton, N. W., Stevens, R., Baker, P., Goble, C. A., Bechhofer, S., & Brass, A. (1999). Query processing in the TAMBIS bioinformatics source integration system. In Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM|Proc. Int. Conf. Sci. Stat. Database Manage. SSDBM. (pp. 138-147). Los Alamitos, CA, United States: IEEE. . Publication link: 9e3b3cfc-55d7-4945-8718-9b7a50626b20
  • Bechhofer, S., Stevens, R., Ng, G., Jacoby, A., Goble, C., Paton, N. W. (Ed.), & Griffiths, T. (Ed.) (1999). {G}uiding the {U}ser: {A}n {O}ntology {D}riven {I}nterface. In N. W. Paton, & T. Griffiths (Eds.), Proceedings of User Interfaces to Data Intensive Systems (UIDIS99). (pp. 158-161). {IEEE} Press. . Publication link: b149d1c4-8504-4834-9ad3-9af54c43861f
  • Stevens, R., Goble, C., Paton, N. W., Bechhofer, S., Ng, G., Baker, P., ... Rost, U. (Ed.) (1999). {C}omplex {Q}uery {F}ormulation {O}ver {D}iverse {I}nformation {S}ources {U}sing an {O}ntology. In E. {Bornberg-Bauer}, A. {De Beuckelaer}, U. Kummer, & U. Rost (Eds.), Workshop on Computation of Biochemical Pathways and Genetic Networks. (pp. 83-88). European Media Lab (EML). . Publication link: a3fc21f4-cf0f-4282-872a-bea0bd12299e

1998

  • Baker, P. G., Brass, A., Bechhofer, S., Goble, C., Paton, N., & Stevens, R. (1998). TAMBIS--Transparent Access to Multiple Bioinformatics Information Sources. In Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology|Proc Int Conf Intell Syst Mol Biol. (Vol. 6, pp. 25-34). AAAI. . Publication link: 42cd5e03-aa04-4fee-9a3e-c4932f9bf96e
  • Baker, P. G., Brass, A., Bechhofer, S., Goble, C., Paton, N., & Stevens, R. (1998). {TAMBIS}: {T}ransparent {A}ccess to {M}ultiple {B}ioinformatics {I}nformation {S}ources. An Overview. In Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB'98). (pp. 25-34). AAAI Press. . Publication link: 389745f9-d3fb-4389-8b95-32f0e7ced879

1997

  • Edwards, A. D. N., & Stevens, R. D. (1997). Visual dominance and the World-Wide Web. In Proceedings of the 6th International World Wide Web Conference (WWW6 Web Access'97).. Publication link: 1f743a80-94a9-41b8-a2e8-a302b841e3d6
  • Stevens, R. D., Edwards, A. D. N., & Harling, P. A. (1997). Access to Mathematics for Visually Disabled Students through Multi-modal Interaction. Human-Computer Interaction (Special issue on Multimodal Interfaces), 12(1), 47-92. DOI: 10.1207/s15327051hci1201&2_3. Publication link: 100004bb-fcd8-434e-ab83-86ee76716dec

1996

  • Weber, G., Stevens, R., Klaus, J. (Ed.), Auff, E. (Ed.), Kremser, W. (Ed.), & Zagler, W. L. (Ed.) (1996). Integration of Speech and Braille in the Maths Workstation. In J. Klaus, E. Auff, W. Kremser, & W. L. Zagler (Eds.), Proceedings of the Interdisciplinary Aspects on Computers Helping People with Special Needs ICCHP '96. (pp. 617-625). {R.Oldenbourg Wien München}. . Publication link: 33a0f649-b794-4067-9a91-b0bf069c1d2a
  • Harling, P. A., Stevens, R., Edwards, A., Klaus, J. (Ed.), Auff, E. (Ed.), Kremser, W. (Ed.), & Zagler, W. L. (Ed.) (1996). Manipulating Auditorially Displayed Algebra Using Gestures. In J. Klaus, E. Auff, W. Kremser, & W. L. Zagler (Eds.), ICCHP '96:Interdisciplinary Aspects on Computers Helping People with Special Needs. (pp. 599-607). R.Oldenbourg Wien München. . Publication link: 580e9df8-8ba2-4f82-aafc-02016fa6b0b0
  • Stevens, R. D., & Edwards, A. D. N. (1996). An Approach to the Evaluation of Assistive Technology. In {Proceedings of the 2nd Annual {ACM} Conference on Assistive technologies (Assets '96)}. (pp. 64-71). {ACM}. DOI: 10.1145/228347.228359. Publication link: 5f9f1954-7742-4745-9607-5acae3d0decb
  • Stevens, R. D., Wright, P. C., Edwards, A. D. N., Brewster, S. A., Klaus, J. (Ed.), Auff, E. (Ed.), ... Zagler, W. L. (Ed.) (1996). An Audio Glance at Syntactic Structure Based on Spoken Form. In J. Klaus, E. Auff, W. Kremser, & W. L. Zagler (Eds.), Proceedings of the 5th International Conference on Interdisciplinary Aspects on Computers Helping People with Special Needs (ICCHP '96). (pp. 627-635). {R.Oldenbourg Wien München}. . Publication link: 7102d815-646b-4ad0-8c36-3f4b9a658f36
  • Stevens, R., Harling, P., Edwards, A., & Berger, D. (Ed.) (1996). Reading and Writing Syntax Trees for Phrase Structure Grammars with a Speech-based Interface. In D. Berger (Ed.), New Technologies in the Education of the Visually Handicapped. (Vol. 237, pp. 271-275). John Libbey Eurotext. . Publication link: a5253b07-7d5e-4248-961b-a522dad626de

1995

  • Pitt, I. J., Brewster, S. A., Stevens, R. D., & Edwards, A. D. N. (Ed.) (1995). Multiple Modalities in Adapted Interfaces. In {Cambridge Series on Extra-Ordinary Human-Computer Interaction}. (Vol. 7, pp. 221-244). Cambridge University Press. . Publication link: b9fe59ff-7b47-4995-b86c-882a8676c94d
  • Wesley, T., Stevens, R., & Engelen, J. (1995). Overview of the European Research work in relation to Information access for visually impaired persons. In Proceedings of the 2nd International Maths Workshop.. Publication link: 152a82a4-b3c9-4ddb-a18f-26fc95a193a7
  • Stevens, R., Edwards, A. D. N., Allen, G. (Ed.), Wilkinson, J. (Ed.), & Wright, P. (Ed.) (1995). Strategy and Prosody in Listening to Algebra. In G. Allen, J. Wilkinson, & P. Wright (Eds.), Adjunct Proceedings of HCI'95: People and Computers. (pp. 160-166). British Computer Society. . Publication link: 1daa4b1d-c40b-42ee-8a7c-0f66dd4cba50
  • Edwards, A. D. N., Stevens, R. D., Pitt, I. J., Safran, A. B. (Ed.), & Assimacopoulos, A. (Ed.) (1995). Représentation non Visuelle des Mathématiques. In A. B. Safran, & A. Assimacopoulos (Eds.), {Le Déficit Visuel, Editions Masson}. (pp. 169-178). Publication link: 0001a57d-e480-468f-8d3a-303990dfca09
  • Edwards, A. D. N., & Stevens, R. D. (1995). Une Interface Multimodale pour L'accèss aux Formules Mathématiques par des Élèves ou Étudiants Aveugles. In Comme les Autres: Interfaces multimodales pour handicapés visuels, Special number 1. (pp. 97-104). INSERM. . Publication link: 4932eaa8-3c07-4c29-a254-9a8edf212ca1

1994

  • Stevens, R. D., Edwards, A. D. N., Zagler, W. L. (Ed.), Busby, G. (Ed.), & Wagner, R. L. (Ed.) (1994). Mathtalk: The Design of an Interface for Reading Algebra Using Speech. In W. L. Zagler, G. Busby, & R. L. Wagner (Eds.), Computers for Handicapped Persons: Proceedings of ICCHP '94, Lecture Notes in Computer Science 860. (pp. 313-320). Springer Verlag. . Publication link: 1abb7564-f765-4165-b29a-cc5c67814efc
  • Stevens, R. D., & Edwards, A. D. N. (1994). Mathtalk: Usable Access to Mathematics. Information Technology and Disabilities, 1(4 Article 5). . Publication link: d4e4ccb2-8824-4b1a-a857-367572548158
  • Stevens, R. D., Brewster, S. A., Wright, P. C., Edwards, A. D. N., & Kramer, G. (Ed.) (1994). Design and Evaluation of an Auditory Glance at Algebra for Blind Readers. In G. Kramer (Ed.), Auditory Display: The Proceedings of the Second International Conference on Auditory Display.. Addison Wesley. . Publication link: bc8b28e7-3f08-4a37-93a0-36a4954e1895
  • Stevens, R. D., Wright, P. C., Edwards, A. D. N., & England, D. (Ed.) (1994). Prosody Improves a Speech Based Interface. In D. England (Ed.), Ancillary Proceedings of HCI'94. British Computer Society. . Publication link: c41a1eee-e2f5-4a1d-bc9e-56e88a87c276

1993

  • Edwards, A. D. N., Stevens, R. D., Burger, D. (Ed.), & Sperandio, J. (Ed.) (1993). Mathematical Representations: Graphs, Curves and Formulas. In D. Burger, & J. Sperandio (Eds.), {Proceedings of the INSERM Seminar Non-Visual Presentations of Data in Human-Computer Interactions: Prospects for the Visually Handicapped}. (pp. 181-194). John Libbey Eurotext. . Publication link: 54c317c0-0493-4281-b7a6-2c363fb1e28e
  • Stevens, R. D., & Edwards, A. D. N. (1993). A Sound Interface to Algebra. In Proceedings of the IEE Colloquium on Special Needs and the Interface. (pp. 511-513). IET. . Publication link: 3ea3072c-641d-4cbf-a848-d99f603d2080

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