Peter Aczel - Journal article

• 2008: Aczel, P (2008). The Relation Reflection Scheme. Math. Log. Q, 54(1), 5-11. eScholarID:1h1 | DOI:10.1002/malq.200710035

• 2006: Aczel, P (2006). Aspects of general topology in constructive set theory. Ann. Pure Appl. Logic, 137(1-3), 3-29. eScholarID:1h2 | DOI:10.1016/j.apal.2005.05.016

• 2006: Peter Aczel, Laura Crosilla, Hajime Ishihara, Erik Palmgren, Peter Schuster. (2006). Binary Refinement Implies Discrete Exponentiation. Studia Logica, 84, 361-368. eScholarID:1a6030

• 2006: ACZEL PH; GAMBINO N. (2006). The generalised type-theoretic interpretation of constructive set theory. Journal of Symbolic Logic, 71(1), 67-103. eScholarID:1a10325

• 2003: ACZEL PH; ADAMEK J; MILIUS S; VELEBEL J. (2003). Infinite trees and completely iterative theories: a coalgebraic view. Theoretical Computer Science, 300(1-3), 1-45. eScholarID:1a10323 | DOI:10.1016/S0304-3975(02)00728-4

• 2002: P.G.H. Aczel, J. Adamek and J. Velebel. (2002). A coalgebraic view of infinite trees. Electronic Notes in Theoretical Computer Science, 44, 79-88. eScholarID:1a2125

• 2001: Aczel, P., Adámek, J. & Velebil, J (2001). A Coalgebraic View of Infinite Trees and Iteration. Electr. Notes Theor. Comput. Sci, 44(1), eScholarID:1h5

• 2001: ACZEL PH. (2001). The Russell-Prawitz Modality. Mathematical Structures in Computer Science, 11, 541-554. eScholarID:1a10326 | DOI:10.1017/S0960129501003309

• 2001: Aczel, P (2001). The Russell-Prawitz modality. Mathematical Structures in Computer Science, 11(4), 541-554. eScholarID:1h6

• 1986: Aczel, P., Paris, J., Wilkie, A., Wilmers, G. & Yates, C (1986). European Summer Meeting of the Association for Symbolic Logic: Manchester, England, 1984. J. Symb. Log, 51(2), 480-502. eScholarID:1h7

• 1972: Aczel, P (1972). Describing Ordinals Using Functionals of Transfinite Type. J. Symb. Log, 37(1), 35-47. eScholarID:1h8

Peter Aczel - Conference contribution

• 2006: Aczel, P (2006). The relation reflection scheme. Presented at Workshop on Trends in Constructive Mathematics in Honor of the 60th Birthday of Douglas Bridges. Chiemsee Isl, GERMANY: Wiley-V C H Verlag Gmbh. eScholarID:2f218 | DOI:10.1002/malq.200710035

• 2002: ACZEL, Peter and Gambino, Nicola. (2002). Collection Principles in Dependent Type Theory. eScholarID:2a678

• 2000: Aczel, P (2000). Algebras and Coalgebras. Presented at Algebraic and Coalgebraic Methods in the Mathematics of Program Construction, International Summer School and Workshop, Oxford, UK, April 10-14, 2000, Revised Lectures. Springer. eScholarID:2h1

• 2000: Aczel, P. & Gambino, N (2000). Collection Principles in Dependent Type Theory. Presented at Types for Proofs and Programs, International Workshop, TYPES 2000, Durham, UK, December 8-12, 2000, Selected Papers. Springer. eScholarID:2h2

• 1998: Aczel, P (1998). On Relating Type Theories and Set Theories. Presented at Types for Proofs and Programs, International Workshop TYPES '98, Kloster Irsee, Germany, March 27-31, 1998, Selected Papers. Springer. eScholarID:2h3

• 1993: Aczel, P (1993). Final Universes of Processes. Presented at Mathematical Foundations of Programming Semantics, 9th International Conference, New Orleans, LA, USA, April 7-10, 1993, Proceedings. Springer. eScholarID:2h4

• 1991: Aczel, P (1991). Term Declaration Logic and Generalised Composita. Presented at Proceedings, Sixth Annual IEEE Symposium on Logic in Computer Science, 15-18 July, 1991, Amsterdam, The Netherlands. IEEE Computer Society. eScholarID:2h5

• 1989: Aczel, P. & Mendler, N (1989). A Final Coalgebra Theorem. Presented at Category Theory and Computer Science, Manchester, UK, September 5-8, 1989, Proceedings. Springer. eScholarID:2h6

• 1988: Mendler, P. & Aczel, P (1988). The notion of a Framework and a framework for LTC. Presented at Proceedings, Third Annual Symposium on Logic in Computer Science, 5-8 July 1988, Edinburgh, Scotland, UK. IEEE Computer Society. eScholarID:2h7

Peter Aczel - Book contribution

• 2008: ACZEL, Peter. (2008). A constructive version of the Lusin Separation Theorem. In S. Lindstrom, E. Palmgren, K. Segerberg, V. Stoltenberg-Hansen (Ed.), Logicism, Intuitionism and Formalism - What has become of them. eScholarID:3a121

• 2005: ACZEL, Peter and FOX, Chris. (2005). Separation properties in Constructive Topology. In L. Crosilla, P. Schuster (Ed.), From Sets and Types to Topology and Analysis. (pp. 176-192). Oxford University Press. eScholarID:3a123

Sophia Ananiadou - Journal article

• 2012: Mu, T., Goulermas, J., Tsujii, J. Ananiadou, S. (In-press). Proximity-based Frameworks for Generating Embeddings from Multi-Output Data. IEEE Transactions on Pattern Analysis and Machine Intelligence, eScholarID:147646 | DOI:10.1109/TPAMI.2012.20

• 2011: Kano, Y., Björne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, K. B., Verspoor, K., Roeder, C., Hunter, L., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, M., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D. R., Riedel, S., Sætre, R., Chun, H.-W., Kim, J.-D., Pyysalo, S., Ohta, T. and Tsujii, J. (2011). U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinformatics, 12(481), eScholarID:147707 | DOI:10.1186/1471-2105-12-481

• 2011: Kocbek, S., Sætre, R., Stiglic, G., Kim, J.-D., Pernek, I., Tsuruoka, Y., Kokol, P., Ananiadou, S. and Tsujii, J. (2011). AGRA: Analysis of Gene Ranking Algorithms. Bioinformatics, 27(8), eScholarID:147693 | DOI:10.1093/bioinformatics/btr097

• 2011: Nobata, C., Dobson, P., Iqbal, S. A., Mendes, P., Tsujii, J., Kell, D. B. and Ananiadou, S. (2011). Mining Metabolites: Extracting the Yeast Metabolome from the Literature. Metabolomics, 7(1), eScholarID:147698 | DOI:10.1007/s11306-010-0251-6

• 2011: Kolluru, B., Hawizy, L. Tsujii, J. Murray-Rust, P. and S. Ananiadou. (2011). Enhancing named entity recognition in chemistry using workflows. PLoS ONE, 6(5), eScholarID:147653 | DOI:10.1371/journal.pone.0020181

• 2011: Tsuruoka, Y., Miwa, M., Hamamoto, K., Tsujii, J., and S. Ananiadou. (2011). Discovering and visualizing indirect associations between biomedical concepts. Bioinformatics, 27(13), eScholarID:147654 | DOI:10.1093/bioinformatics/btr214

• 2011: Sasaki, Y., Wang, X., Ananiadou, S. (2011). Extracting Secondary Bio-Event Arguments with Extraction Constraints. Computational Intelligence, 27(4), eScholarID:147701 | DOI:10.1111/j.1467-8640.2011.00406.x

• 2011: Thomas, J., McNaught, J., Ananiadou, S. (2011). Applications of text mining within systematic reviews. Research Synthesis Methods, 2(1), eScholarID:147700 | DOI:10.1002/jrsm.27

• 2011: Ananiadou, S., Sullivan, D., Black, W. Gillespie, J., Mao, C., Pyysalo, S., Kolluru, B., Tsujii, J. Sobral, B. (2011). Named Entity Recognition for Bacterial Type IV Secretion. PLoS ONE, 6(3), eScholarID:147655 | DOI:10.1371/journal.pone.0014780

• 2011: 3. Thompson, P., McNaught, J., Montemagni, S., Calzolari, N., del Gratta, R., Lee, V., Marchi, S., Monachini, M., Pezik, P., Quochi, V., Rupp, C. J., Sasaki, Y., Venturi, G., Rebholz-Schuhmann, D. and Ananiadou, S (2011). The BioLexicon: a large-scale terminological resource for biomedical text mining. BMC Bioinformatics, 12(397), eScholarID:147648 | DOI:10.1186/1471-2105-12-397

• 2011: Kolluru, B. Nakjang, S., Hirt, R.P., Wipat, A. Ananiadou, S. (2011). Automatic extraction of microorganisms and their habitats from free text using text mining workflows. Journal of Integrative Bioinformatics, 8(2), eScholarID:147652

• 2011: Wang, X., McKendrick, I., Barrett, I., Dix, I., French, T., Tsujii, J. and S. Ananiadou. (2011). Automatic Extraction of Angiogenesis Bio-Process from Text. Bioinformatics, eScholarID:147640

• 2011: Thompson, P., Nawaz, R., McNaught, J. Ananiadou, S. (2011). Enriching a biomedical event corpus with meta-knowledge annotation. BMC Bioinformatics, 12(393), eScholarID:147645 | DOI:10.1186/1471-2105-12-393

• 2011: 5. Xinglong Wang, Rafal Rak, Angelo Restifcar, Chikashi Nobata, C.J. Rupp, Riza Theresa B. Batista-Navarro, Raheel Nawaz and Sophia Ananiadou. (2011). Detecting Experimental Techniques and Selecting Relevant Documents for Protein-Protein Interactions from Biomedical Literature. BMC Bioinformatics, 12(S11), eScholarID:147651 | DOI:10.1186/1471-2105-12-S8-S11

• 2011: Kano, Y., M. Miwa, K. Cohen, L. Hunter, S. Ananiadou, and J. Tsujii. (2011). U-Compare: a modular NLP workflow construction and evaluation system. IBM Systems Journal, 55(3), eScholarID:147649 | DOI:10.1147/JRD.2011.2105691

• 2011: Kano, Y. Miwa, M., Cohen, K.B., Hunter, L., Ananiadou, S., Tsujii, J. (2011). U-Compare: a modular NLP workflow construction and evaluation system. IBM Journal of Research and Development, 55(3), eScholarID:147691 | DOI:10.1147/JRD.2011.2105691

• 2010: Sasaki, Y., McNaught, J., Ananiadou, S. (2010). The value of an in domain lexicon in genomics Q/A. Journal of bioinformatics and computational biology, 8(1), 147-161. eScholarID:110443 | DOI:10.1142/S0219720010004513

• 2010: Nobata, C., Dobson, P. Iqbal, S. Mendes, P. Tsujii, J., Kell, D.B., Ananiadou, S. (2010). Mining Metabolites: extracting the yeast metabolome from the literature. Metabolomics, eScholarID:110431 | DOI:10.1007/s11306-010-0251-6

• 2010: Wang, X., Tsujii, J., Ananiadou, S. (2010). Disambiguating the species of biomedical named entities using natural language parsers. Bioinformatics, 26(5), 661-667. eScholarID:110440 | DOI:10.1093/bioinformatics/btq002

• 2010: Ananiadou, S, Thomspon, P., Thomas, J., Mu, T. Oliver, S., Rickinson, M., Sasaki, Y., Weissenbacher, D. and McNaught, J. (2010). Supporting the Education Evidence Portal via Text Mining. Philosophical Transcations of the Royal Society A, 368(1925), 3829-3844. eScholarID:110426 | DOI:10.1098/rsta.2010.0152

• 2010: Ananiadou, S. Pyysalo, S. Tsujii, J. and D.B. Kell. (2010). Event Extraction for Systems Biology by Text Mining the Literature. Trends in Biotechnology, 28(7), eScholarID:99441 | DOI:10.1016/j.tibtech.2010.04.005

• 2010: kemper, B., Matsuzaki, T., Matsuoka, Y. tsuruoka, Y., Kitano, H. Ananiadou, S., Tsujii, J. (2010). PathText: a text mining integrator for biological pathway visualisations. Bioinformatics, 26(12), 1374-1381. eScholarID:110427 | DOI:10.1093/bioinformatics/btq221

• 2010: Kano, Y., Dobson, P., Nakanishi, M. Tsujii, J. and Ananiadou, S. (2010). Text Mining Meets Workflow: Linking U-Compare with Taverna. Bioinformatics, eScholarID:99443 | DOI:10.1093/bioinformatics/btq464

• 2010: Okazaki, N., Ananiadou, S. Tsujii. (2010). Building a High Quality Sense Inventory for Improved Abbreviation Disambiguation. Bioinformatics, 26(9), 1246-1253. eScholarID:110433 | DOI:10.1093/bioinformatics/btq129

• 2010: McEntye, J., Ananiadou, S., Andrews, S. Black, W.J., Boulderstone, R., et al. (2010). UKPMC: a full text article resource for the life sciences. Nucleic Acids Research, eScholarID:110428 | DOI:10.1093/nar/gkq1063

• 2009: Kano, Y., Baumgartner Jr, W., McCrochon, L., Ananiadou, S., Cohen, K., Hunter, L. & Tsujii, J (2009). U-Compare: share and compare text mining tools with UIMA. Bioinfomatics, 25(15), 1997-1998. eScholarID:0j70 | DOI:10.1093/bioinformatics/btp289

• 2009: Thompson, P., Iqbal, S. A., McNaught, J. and Ananiadou, S. (2009). Construction of an annotated corpus to support biomedical information extraction. BMC Bioinformatics, 10, 349. eScholarID:114085 | DOI:10.1186/1471-2105-10-349

• 2009: Ananiadou, S, Okazaki, N., procter, R., Rea, B., Thomas, J. (2009). Supporting Systematic Reviews Using Text Mining. Social Science Computer Review, 27(4), 509-523. eScholarID:110451 | DOI:10.1177/0894439309332293

• 2009: Sasaki, Y., Rea, B. ,Ananiadou, S. (2009). Clinical Text Classification under the Open and Closed Topic assumptions. International Journal on Data Mining and Bioinformatics, 3(3), 299-313. eScholarID:110453 | DOI:10.1504/IJDMB.2009.026703

• 2009: Lyte, V., Jones, S., Ananiadou, S. and Kerr, L. (2009). UK Institutional Repository Search: Innovation and Discovery. Ariadne, (61), eScholarID:114052

• 2009: Piao, S., Tsuruoka, Y. and Ananiadou, S. (2009). Sentiment Analysis with Knowledge Resource and NLP Tools. International Journal of Interdisciplinary Social Sciences, 4(5), 17-28. eScholarID:114054

• 2008: Sasaki, Y., Tsuruoka, Y., McNaught, J. & Ananiadou, S (2008). How to make the most of NE dictionaries in statistical NER. BMC Bioinformatics, 9(Suppl 11), S5. eScholarID:0j98 | DOI:10.1186/1471-2105-9-S11-S5

• 2008: Meziane, F., Athanasakis, N. & Ananiadou, S (2008). Generating Natural Language specifications from UML class diagrams. Requirements Engineering, 13(1), 1-18. eScholarID:0j74 | DOI:10.1007/s00766-007-0054-0

• 2008: Tsuruoka, Y., Tsujii, J. & Ananiadou, S (2008). FACTA: a text search engine for finding associated biomedical concepts. Bioinformatics, 24(21), 2259-2260. eScholarID:0j116 | DOI:10.1093/bioinformatics/btn469

• 2008: Tsuruoka, Y., McNaught, J. & Ananiadou, S (2008). Normalizing biomedical terms by minimizing ambiguity and variability. BMC Bioinformatics, 9(Suppl 3), S2. eScholarID:0j118 | DOI:10.1186/1471-2105-9-S3-S2

• 2008: Tsuruoka, Y., Tsujii, J. & Ananiadou, S (2008). Accelerating the annotation of sparse named entities by dynamic sentence selection. BMC Bioinformatics, 9(Suppl 11), S8. eScholarID:0j117 | DOI:10.1186/1471-2105-9-S11-S8

• 2007: Ananiadou, S (2007). The National Centre for Text Mining: a Vision for the Future. Ariadne, 53, eScholarID:0j57

• 2007: Tsuruoka, Y., McNaught, J., Tsujii, J. & Ananiadou, S (2007). Learning string similarity measures for gene/protein name dictionary look-up using logistic regression. Bioinformatics, 23(20), 2768-2774. eScholarID:0j115

• 2006: Ananiadou, S., Kell, D. & Tsujii, J (2006). Text mining and its potential applications in systems biology. Trends in Biotechnology, 24(12), 571-579. eScholarID:0j56

• 2006: Mima, H., Ananiadou, S. & Matsushima, K (2006). Terminology-Based Knowledge Mining for New Knowledge Discovery. ACM Transactions on Asian Language Information Processing (TALIP), 5(1), 74-88. eScholarID:0j75

• 2006: Nenadić, G. & Ananiadou, S (2006). Mining Semantically Related Terms from Biomedical Literature. ACM Transactions on Asian Language Information Processing (TALIP), 5(1), 22-43. eScholarID:0j79

• 2006: Okazaki, N. & Ananiadou, S (2006). Building an Abbreviation Dictionary using a Term Recognition Approach. Bioinformatics, 22(24), 3089-3095. eScholarID:0j83

• 2005: Tsujii, J. & Ananiadou, S (2005). Thesaurus or Logical Ontology, Which One Do We Need for Text Mining? Language Resources and Evaluation, 39(1), 77-90. eScholarID:0j112

• 2005: Spasić, I., Ananiadou, S., McNaught, J. & Kumar, A (2005). Text mining and ontologies in biomedicine: making sense of raw text. Briefings in Bioinformatics, 6(3), 239-251. eScholarID:0j106

• 2005: Ananiadou, S., Chruszcz, J., Keane, J., McNaught, J. & Watry, P (2005). The National Centre for Text Mining: Aims and Objectives. Ariadne, 42, eScholarID:0j51

• 2005: Spasić, I., Ananiadou, S. & Tsujii, J (2005). MaSTerClass: a case-based reasoning system for the classification of biomedical terms. Bioinformatics, 21(11), 2748-2758. eScholarID:0j107

• 2004: Spasić, I. & Ananiadou, S (2004). Using automatically learnt verb selectional preferences for classification of biomedical terms. Journal of Biomedical Informatics, 37(6), 483-497. eScholarID:0j104

• 2004: Nenadić, G., Spasić, I. & Ananiadou, S (2004). Automatic Discovery of Term Similarities Using Pattern Mining. International Journal of Terminology, 10(1), 55-80. eScholarID:0j77

• 2004: Ananiadou, S., Friedman, C. & Tsujii, J (2004). Introduction: named entity recognition in biomedicine. Journal of Biomedical Informatics, 37(6), 393-395. eScholarID:0j50

Sophia Ananiadou - Conference contribution

• 2011: Ohta, T., Pyysalo, S., Ananiadou, S. and Tsujii, J (2011). Pathway Curation Support as an Information Extraction Task. Presented at Fourth International Symposium on Languages in Biology and Medicine (LBM 2011). Singapore. eScholarID:147723

• 2011: Batista-Navarro, R. T. B and Ananiadou, S. (2011). Building a coreference-annotated corpus from the domain of biochemistry. Presented at BioNLP, ACL. Portland, Oregon. eScholarID:147704

• 2011: Kontonatsios, G., Korkontzelos, I., Kolluru, B. and Ananiadou, S (2011). Adding Text Mining Workflows as Web Services to the BioCatalogue. Presented at 4th International Workshop on Semantic Web Aplications and Tools for the Life Sciences (SWAT4LS). London. eScholarID:147717

• 2011: Batista-Navarro, R.T.B., Ananiadou, S. (2011). Discovering Potential Drugs by Extracting Biological Activities of Natural Products. Presented at Pacific Symposium on Biocomputing. Hawaii. eScholarID:147703

• 2011: Korkontzelos, I., Mu, T., Restificar, A. and Ananiadou, S (2011). Text mining for efficient search and assisted creation of clinical trials. Presented at ACM Fourth International Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO 2011). Glasgow. eScholarID:147721

• 2011: Kolluru, B., Nakjang, S., Rupp, C. J., Hirt, R. P, Wipat, A. and Ananiadou, S. (2011). Automatic extraction of microorganisms and their habitats from free text using text-mining workflows. Presented at International Symposium on Integrative Bioinformatics. eScholarID:147711

• 2011: Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. and Ananiadou, S (2011). Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. Presented at BioNLP, ACL. eScholarID:147726

• 2011: Pyysalo, S., Ohta, T. and Ananiadou, S. (2011). Anatomical Entity Recognition with Open Biomedical Ontologies. Presented at Fourth International Symposium on Languages in Biology and Medicine (LBM 2011). Singapore. eScholarID:147725

• 2010: Ananiadou, S.,Thompson, P. and Nawaz, R (2010). Improving search through Event-based Biomedical Text Mining. Presented at 1st Automated Motif Discovery in Cultural Heritage and Scientific Communication Texts (AMICUS) workshop. Vienna. eScholarID:114016

• 2010: Wang, X., Rak, R., Restificar, A., Nobata, C., Rupp, C. J., Batista-Navarro, R. T. B, Nawaz, R. and Ananiadou, S (2010). NaCTeM Systems for BioCreative III PPI Tasks. Presented at BioCreative III Workshop. eScholarID:114031

• 2010: Black, W.J., Rupp, C. J., Nobata, C., McNaught, J., Tsujii, J. and Ananiadou, S (2010). High-Precision Semantic Search by Generating and Testing Questions. Presented at UK e-Science All Hands Meeting 2010. eScholarID:113988

• 2010: Nawaz, R., Thompson, P. and Ananiadou, S. (2010). Event Interpretation: A Step towards Event-Centred Text Minin. Presented at 1st Automated Motif Discovery in Cultural Heritage and Scientific Communication Texts (AMICUS) workshop. Vienna. eScholarID:114014

• 2010: Pyysalo, S., Ohta, T., Cho, H. -C., Sullivan, D., Mao, C., Sobral, B., Tsujii, J. and Ananiadou, S. (2010). Towards Event Extraction from Full Texts on Infectious Diseases. Presented at BioNLP 2010. eScholarID:114017

• 2010: Rupp, C. J., Thompson, P., Black, W.J., McNaught, J. and Ananiadou, S. (2010). A Specialised Verb Lexicon as the Basis of Fact Extraction in the Biomedical Domain. Presented at Interdisciplinary Workshop on Verbs: The Identification and Representation of Verb Features (Verb 2010). Pisa, Italy. eScholarID:114020

• 2010: Nawaz, R., Thompson, P. and Ananiadou, S. (2010). Evaluating a meta-knowledge annotation scheme for bio-events. Presented at Workshop on Negation and Speculation in Natural Language Processing. Upsala, Sweden. eScholarID:114003

• 2010: Ananiadou, S, McNaught, J., Thomas, J. Oliver, S. (2010). Evaluating a text mining based educational search portal. Presented at International Conference on Language Resources and Evaluation. Malta. eScholarID:110425

• 2010: Wang, X., Ananiadou, S. (2010). A task oriented extension of the Chinese MeSH Concepts Hierarchy. Presented at Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010). eScholarID:110447

• 2010: Mu, T., Wang, X., Tsujii. J. Ananiadou, S. (2010). Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation. Presented at Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010). Beijing, China: ACL. eScholarID:110429

• 2010: Mu, T. and S. Ananiadou. (2010). Proximity-based graph embeddings for multi-label classification. Presented at International Conference on Knowledge Discovery and Information Retrieval. Valencia. eScholarID:110424

• 2010: Nawaz, R., Thompson, P., McNaught, J, Ananiadou, S. (2010). Meta-knowledge annotation of bio-events. Presented at 7th International Conference on Language Resources and Evaluation. Malta. eScholarID:110448

• 2010: Kano, Y., Dorado, R., McCrochon, L., Ananiadou, S. and Tsujii, J. (2010). U-Compare: An integrated language resource evaluation platform including a comprehensive UIMA resource library. Presented at Seventh International Conference on Language Resources and Evaluation (LREC 2010). Malta. eScholarID:113993

• 2009: Sasaki, Y., Thompson, P., McNaught, J. and Ananiadou, S. (2009). Biological Event Recognition with Textual Induction. Presented at 3rd International Symposium on Languages in Biology and Medicine (LBM-2009). eScholarID:114074

• 2009: Tekiner, F., Ananiadou, S., Tsuruoka, Y. and Tsujii, J. (2009). Highly Scalable Text Mining Parallel Tagging Application. Presented at ICSCCW 2009. eScholarID:114076

• 2009: Sasaki, Y., McNaught, J. and Ananiadou, S. (2009). The Value of an In-Domain Lexicon in Genomics QA. Presented at 3rd International Symposium on Languages in Biology and Medicine (LBM-2009). eScholarID:114061

• 2009: Kano, Y., McCrochon, L., Ananiadou, S. & Tsujii, J (2009). Integrated NLP Evaluation System for Pluggable Evaluation Metrics with Extensive Interoperable Toolkit. eScholarID:0j69

• 2009: Nobata, C., Sasaki, Y., Okazaki, N., Rupp, C., Tsujii, J. & Ananiadou, S (2009). Semantic Search on Digital Document Repositories based on Text Mining Results. eScholarID:0j81

• 2009: Ananiadou, S., Weissenbacher, D., Rea, B., Pieri, E., Lin, Y., Vis, F., Procter, R. & Halfpenny, P (2009). Supporting Frame Analysis using Text Mining. eScholarID:0j61

• 2009: Wang, X., Tsujii, J. & Ananiadou, S (2009). Classifying Relations for Biomedical Named Entity Disambiguation. eScholarID:0j123

• 2009: Tsuruoka, Y., Tsujii, J. & Ananiadou, S (2009). Fast Full Parsing by Linear-Chain Conditional Random Fields. eScholarID:0j121

• 2009: Piao, S., Rea, B., McNaught, J. & Ananiadou, S (2009). Improving Full Text Search With Text Mining Tools. eScholarID:0j90

• 2009: Matsuoka, Y., Ghosh, S., Kikuchi, N., Sætre, R., Kemper, B., Okazaki, N., Ananiadou, S., Tsujii, J. & Kitano, H (2009). Community Platform for Pathway Model Building. eScholarID:0j73

• 2009: Sasaki, Y., Thompson, P., McNaught, J. & Ananiadou, S (2009). Three BioNLP Tools Powered by the BioLexicon. eScholarID:0j101

• 2009: Tsuruoka, Y., Tsujii, J. & Ananiadou, S (2009). Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty. eScholarID:0j120

• 2009: Rea, B., Weissenbacher, D., Sasaki, Y., Thomas, J. & Ananiadou, S (2009). ASSIST: Education Evidence Portal. eScholarID:0j92

• 2008: Rebholz-Schuhmann, D., Pezik, P., Lee, V., Kim, J., del Gratta, R., Sasaki, Y., McNaught, J., Montemagni, S., Monachini, M., Calzolari, N. & Ananiadou, S (2008). BioLexicon: Towards a Reference Terminological Resource in the Biomedical Domain. Presented at 6th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB-2008). eScholarID:0j93

• 2008: Sætre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. & Tsujii, J (2008). PathText: Text Mining Tools Integrated with Biological Pathway. Presented at Genomes to Systems Conference 2008. eScholarID:0j95

• 2008: Kano, Y., Nguyen, N., Sætre, R., Yoshida, K., Fukamachi, K., Miyao, Y., Tsuruoka, Y., Ananiadou, S. & Tsujii, J (2008). Towards Data And Goal Oriented Analysis: Tool Inter-Operability And Combinatorial Comparison. eScholarID:0j67

• 2008: Kano, Y., Nguyen, N., Sætre, R., Yoshida, K., Miyao, Y., Tsuruoka, Y., Matsubayashi, Y., Ananiadou, S. & Tsujii, J (2008). Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example. eScholarID:0j66

• 2008: Hirohata, K., Okazaki, N., Ananiadou, S. & Ishizuka, M (2008). Identifying Sections in Scientific Abstracts using Conditional Random Fields. eScholarID:0j65

• 2008: Sasaki, Y., Montemagni, S., Pezik, P., Rebholz-Schuhmann, D., McNaught, J. & Ananiadou, S (2008). BioLexicon: A Lexical Resource for the Biology Domain. eScholarID:0j97

• 2008: Okazaki, N., Tsuruoka, Y., Ananiadou, S. & Tsujii, J (2008). A Discriminative Candidate Generator for String Transformations. eScholarID:0j84

• 2008: Tsuruoka, Y., Tsujii, J. & Ananiadou, S (2008). Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection. eScholarID:0j119

• 2008: Sætre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. & Tsujii, J (2008). Connecting Text Mining and Pathways using the PathText Resource. eScholarID:0j94

• 2008: Splendiani, A., Piao, S., Sasaki, Y., Ananiadou, S., McNaught, J. & Burgun, A (2008). Compositional Enrichment of Bio-Ontologies. eScholarID:0j109

• 2008: Piao, S., McNaught, J. & Ananiadou, S (2008). Clustering Related Terms with Definitions. eScholarID:0j88

• 2008: Thompson, P., Cotter, P., McNaught, J., Ananiadou, S., Montemagni, S., Trabucco, A. & Venturi, G (2008). Building a Bio-Event Annotated Corpus for the Acquisition of Semantic Frames from Biomedical Corpora. eScholarID:0j110

• 2008: Nobata, C., Cotter, P., Okazaki, N., Rea, B., Sasaki, Y., Tsuruoka, Y., Tsujii, J. & Ananiadou, S (2008). Kleio: a knowledge-enriched information retrieval system for biology. eScholarID:0j80

• 2008: Sasaki, Y., Tsuruoka, Y., McNaught, J. & Ananiadou, S (2008). How to Make the Most of NE Dictionaries in Statistical NER. eScholarID:0j100

• 2008: Sasaki, Y., Thompson, P., Cotter, P., McNaught, J. & Ananiadou, S (2008). Event Frame Extraction Based on a Gene Regulation Corpus. eScholarID:0j99

• 2008: Kano, Y., Nguyen, N., Sætre, R., Fukamachi, K., Yoshida, K., Miyao, Y., Tsuruoka, Y., Ananiadou, S. & Tsujii, J (2008). Sharable type system design for tool inter-operability and combinatorial comparison. eScholarID:0j68

• 2008: Thompson, P., Venturi, G., McNaught, J., Montemagni, S. & Ananiadou, S (2008). Categorising Modality in Biomedical Texts. eScholarID:0j111

• 2007: Ananiadou, S., Procter, R., Rea, B., Sasaki, Y. & Thomas, J (2007). Supporting Systematic Reviews using Text Mining. eScholarID:0j58

• 2007: Rea, B. & Ananiadou, S (2007). Text Mining Services to Support E-Research. eScholarID:0j91

• 2007: Frantzi, K. & Ananiadou, S (2007). C-value for Authorship Identification. eScholarID:0j63

• 2007: Sasaki, Y., Rea, B. & Ananiadou, S (2007). Multi-topic Aspects in Clinical Text Classification. eScholarID:0j96

• 2007: Piao, S., Buyko, E., Tsuruoka, Y., Tomanek, K., Kim, J., McNaught, J., Hahn, U., Su, J. & Ananiadou, S (2007). BOOTStrep Annotation Scheme: Encoding Information for Text Mining. eScholarID:0j85

• 2007: Hahn, U., Buyko, E., Tomanek, K., Piao, S., McNaught, J., Tsuruoka, Y. & Ananiadou, S (2007). An Annotation Type System for a Data-Driven NLP Pipeline. eScholarID:0j64

• 2007: Ananiadou, S., Cotter, P., Nobata, C., Okazaki, N., Rea, B., Sasaki, Y., Tsuruoka, Y. & Tsujii, J (2007). SemText: a semantically enriched information retrieval system for biology. eScholarID:0j59

• 2007: Piao, S., Ananiadou, S., Tsuruoka, Y., Sasaki, Y. & McNaught, J (2007). Mining Opinion Polarity Relations of Citations. eScholarID:0j87

• 2007: Piao, S., Ananiadou, S. & McNaught, J (2007). Integrating Annotation Tools into UIMA for Interoperability. eScholarID:0j86

• 2006: Kim, J., Ananiadou, S. & Tsujii, J (2006). Ontology based Semantic Annotation for Knowledge Extraction. eScholarID:0j71

• 2006: Okazaki, N. & Ananiadou, S (2006). Clustering Acronyms in Biomedical Text for Disambiguation. eScholarID:0j82

• 2005: Tsuruoka, Y., Ananiadou, S. & Tsujii, J (2005). A Machine Learning Approach To Acronym Generation. eScholarID:0j114

• 2005: Spasić, I. & Ananiadou, S (2005). A flexible measure of contextual similarity for biomedical terms. eScholarID:0j108

• 2004: Nenadić, G., Ananiadou, S. & McNaught, J (2004). Enhancing automatic term recognition through recognition of variation. eScholarID:0j76

Sophia Ananiadou - Conference proceeding

• 2006: Ananiadou, S. and Fluck, J. (2006). Proceedings of the Second International Symposium on Semantic Mining in Biomedicine (SMBM). Presented at Second International Symposium on Semantic Mining in Biomedicine (SMBM). eScholarID:114299

Sophia Ananiadou - Book

• 2006: (2006). Text Mining for Biology And Biomedicine. Edited by Ananiadou, S, and J McNaught. , Artech House, Inc. eScholarID:0j52

Sophia Ananiadou - Book contribution

• 2009: Venturi, G., Montemagni, S., Marchi, S., Sasaki, Y., Thompson, P., McNaught, J. and Ananiadou, S. (2009). Bootstrapping a Verb Lexicon for Biomedical Information Extraction. In Gelbukh, A (Ed.), Proceedings of the 10th International Conference on Intelligent Text Processing and Computational Linguistics (CICLing 2009). (pp. 137-148). Springer. eScholarID:114174

• 2009: Sophia Ananiadou. (2009). Text Mining for Biomedicine. In Prince, V. & Rocche, M (Ed.), Information Retrieval in Biomedicine: natural Language Processing for Knowledge Representation. (pp. 1-11). eScholarID:110450

• 2009: (2009). An Improved Automatic Term Recognition method for Spanish. In Gelbukh, A (Ed.), Barrón-Cedeño, A., Sierra, G. E., Drouin, P. and Ananiadou, S. (pp. 125-136). Proceedings of the 10th International Conference on Intelligent Text Processing and Computational Linguistics (CICLing 2009): Springer. eScholarID:114170

• 2006: Ananiadou, S. & Nenadić, G (2006). Automatic Terminology Management in Biomedicine. In Ananiadou, S. & McNaught, J. (Ed.), Text Mining for Biology and Biomedicine. (pp. 67-98). eScholarID:0j54

• 2006: Ananiadou, S. & McNaught, J (2006). Introduction to Text Mining in Biology. In Ananiadou, S. & McNaught, J. (Ed.), Text Mining for Biology and Biomedicine. (pp. 1-12). eScholarID:0j53

• 2005: Tsuruoka, Y., Tateisi, Y., Kim, J., Ohta, T., McNaught, J., Ananiadou, S. & Tsujii, J (2005). Developing a Robust Part-of-Speech Tagger for Biomedical Text. Advances in Informatics - 10th Panhellenic Conference on Informatics. ( 3746, pp. 382-392). eScholarID:0j113

• 2005: Nenadić, G., Spasić, I. & Ananiadou, S (2005). Mining Biomedical Abstracts: What's in a Term?. In Su, K., Tsujii, J., Lee, J. & Kwong, O. (Ed.), Natural Language Processing - IJCNLP 2004. ( 3248, ). eScholarID:0j78

• 2004: Spasić, I., Nenadić, G. & Ananiadou, S (2004). Learning to Classify Biomedical Terms through Literature Mining and Genetic Algorithms. In Yang, Z., Everson, R. & Yin, H. (Ed.), Intelligent Data Engineering and Automated Learning - IDEAL 2004. ( 3177, pp. 345-351). eScholarID:0j105

Susan Astley - Journal article

• 2011: Brentnall AR, Duffy SW, Crowder MJ, Gillan MG, Astley SM, Wallis MG, James J, Boggis Cr, Gilbert FJ. (2011). A method for exploratory repeated-measures analysis applied to a breast-cancer screening study. The Annals of Applied Statistics, 5(4), 2448-2469. eScholarID:153422 | DOI:10.1214/11-AOAS481

• 2010: Jonathan J. James,Fiona J. Gilbert,Matthew G. Wallis ,Maureen G. C. Gillan, Susan M. Astley ,Caroline R. M. Boggis ,Olorunsola F. Agbaje, Adam R. Brentnall, Stephen W. Duffy. (2010). Mammographic Features of Breast Cancers at Single Reading with Computer-aided Detection and at Double Reading in a Large Multicenter Prospective Trial of Computer-aided Detection: CADET II. Radiology, 256, 379-386. eScholarID:153427 | DOI:10.1148/radiol.10091899

• 2008: Duffy SW, Nagtegaal ID, Astley SM, Gillan MGC, Mcgee MA, Boggis CRM, Wilson M, Beetles U, Griffiths M, Jain AK, Johnson J, Roberts R, Deans H, Duncan K Iyengar G, Griffiths P, Warwick J, Cuzick J, Gilbert FJ. (2008). Visually Assessed Breast Density: the need for two views. Breast Cancer Research, 10(R64), eScholarID:53169 | DOI:10.1186/bcr2123

• 2008: Gilbert FJ, Astley SM, Boggis CRM, McGee MA, Griffiths PM, Duffy SW, Agbaje OF, Gillan MGC, Wilson M, Jain AK, Barr N, Beetles U, Griffiths MA, Johnson J, Roberts R, Deans H, Duncan KA, Iyengar G. (2008). Variable size CAD prompts and mammography film reader decisions. Breast Cancer Research, 10(R72), eScholarID:53115 | DOI:10.1186/bcr2137

• 2008: FJ Gilbert, SM Astley, MC Gillan, OF Agbaje, MG Wallis, J James, CRM Boggis, SW Duffy. (2008). A comparison of single reading with Computer Aided Detection and Double Reading for Screening Mammography. New England Journal of Medicine, 359, 1675-1684. eScholarID:53036 | DOI:10.1056/NEJMoa0803545

• 2006: ASTLEY SM; GILBERT F; BOGGIS C; DUFFY S; . (2006). Single reading with computer-aided detection and double reading of screening mammograms in the United Kingdom national breast screening programme. Radiology, 241(1), 47-53. eScholarID:1a10115 | DOI:10.1148/radiol.2411051092

• 2005: ASTLEY SM. (2005). Evaluation of computer aided detection (CAD) prompting techniques for mammography. British Journal of Radiology, 78(special issue 1), S20-S25. eScholarID:1a10114 | DOI:10.1259/bjr/37221979

• 2004: ASTLEY SM; ZWIGGELAAR R; BOGGIS C; TAYLOR C. (2004). Linear structures in mammographic images: detection and classification. IEEE Transactions on Medical Imaging, 23(9), 1077-1086. eScholarID:1a10116 | DOI:10.1109/TMI.2004.828675

• 2004: ASTLEY SM; GILBERT F. (2004). Computer-aided detection in mammography. Clinical Radiology, 59(5), 390-399. eScholarID:1a10117 | DOI:10.1016/j.crad.2003.11.017

Susan Astley - Conference contribution

• 2011: Makaronidis J; Berks M; Sergeant J, Morris J, Boggis CRM, Wilson M, Barr N, Astley S. (2011). Assessment of breast density: reader performance using synthetic mammographic images. Presented at SPIE Medical Imaging. Lake Buena Vista, Florida: SPIE. eScholarID:153424

• 2011: Berks M, Chen Z, Tresadern P, Astley S, Taylor C. (2011). Detecting and classifying linear structures in mammograms using random forests. Presented at Information Processing in Medical Imaging. eScholarID:153420

• 2011: R. Sadeghzadeh; M. Berks; S. M. Astley; C. J. Taylor. (2011). Evaluation of blood vessel detection methods. Presented at SPIE Medical Imaging. Lake Buena Vista, Florida, USA: SPIE. eScholarID:153433

• 2010: M Berks, C Taylor, R Rahim, D Barbarosa da Silva, C Boggis and S Astley. (2010). Synthesising malignant breast masses in normal mammograms. Presented at International Workshop on Digital Mammography. Girona, Spain: Springer. eScholarID:153444

• 2010: 10. J Diffey, J Morrison, M Berks, J Greene, J Morris, A Maxwell, C Boggis, A Hufton, and S Astley. (2010). Volumetric Breast Density and Breast Cancer Risk Factors in a Screening Population. Presented at International Workshop on Digital Mammography. Girona, Spain: Springer. eScholarID:153447

• 2010: 4. C Jeffries Chung, J Diffey, J Morrison, M Berks, R Verow, J Morris, M Wilson, C Boggis, N Barr, SM Astley. (2010). Automated Assessment of Area of Dense Tissue in the Breast: A comparison with Human Estimation. Presented at International Workshop on Digital Mammography. Girona: Springer. eScholarID:153438

• 2010: Michael Berks; David Barbosa da Silva; Caroline Boggis; Sue Astley. (2010). Evaluating the realism of synthetically generated mammographic lesions: an observer study. Presented at SPIE Medical Imaging 2010. SPIE. eScholarID:153435

• 2010: R Verow, M Berks, J Diffey, C Chung, J Morrison, M Wilson, C Boggis, N Barr, J Morris, A Hufton and S Astley. (2010). Inter and Intra Observer Variability in a Semi-Automatic Method for Measuring Volumetric Breast Density. Presented at International Workshop on Digital Mammography. Girona, Spain: Springer. eScholarID:153446

• 2010: N Barr, C Boggis, N Barr, M Wilson, J Morris, M Berks and S Astley. (2010). Comparison of microcalcification detection rates and recall rates in digital and analogue mammography. Presented at International Workshop on Digital Mammography. Girona, Spain: Springer. eScholarID:153445

• 2010: Sukha, M Berks, J Morris, C Boggis, M Wilson, N Barr, SM Astley. (2010). Visual Assessment of Breast Density in Digital Mammograms. Presented at International Workshoip on Digital Mammography. Girona, Spain: Springer. eScholarID:153441

• 2010: Jenny Diffey, Michael Berks, Alan Hufton, Camilla Chung, Rosanne Verow, Joanna Morrison, Mary Wilson, Caroline Boggis, Julie Morris, Anthony Maxwell and Susan Astley. (2010). A stepwedge-based method for measuring breast density: observer variability and comparison with human reading. Presented at SPIE Medical Imaging. eScholarID:153429

• 2010: M Berks, C Taylor, R Rahim, C Boggis, S Astley. (2010). Modelling structural deformations in mammographic tissue using the dual tree complex wavelet. Presented at International Workshop on Digital Mammography. Girona, Spain: Springer. eScholarID:153443

Susan Astley - Report

• 2010: F.J..Gilbert, K.C.Young, S.M. Astley. P Whelehan, M G C Gillan. (2010). Digital Breast Tomosynthesis. NHS Breast Screening Programme. eScholarID:153428

Teresa Attwood - Journal article

• 2011: Vroling B, Thorne D, McDermott P, Attwood TK, Vriend G, Pettifer S. (2011). Integrating GPCR-specific information with full text articles. BMC Bioinformatics, 12(1), 362. eScholarID:130599 | DOI:10.1186/1471-2105-12-362

• 2011: Gaudet, et al. (2011). Towards BioDBcore: a community-defined information specification for biological databases. 
. Database, baq027, eScholarID:124940 | DOI:10.1093/nar/gkq1173

• 2011: Mitchell, A.L., Selimas, I. & Attwood, T.K. (2011). MINOTAUR – a Web-based annotator assistant tool. I. Journal of Systems Biology & Biomedical Technologies, eScholarID:124942

• 2011: Pettifer, S.R., McDermott, P., Marsh, J., Thorne, D. & Attwood, T.K. (2011). Ceci n’est pas un hamburger: modelling and representing the scholarly article. Learned Publishing, eScholarID:124943 | DOI:10.1087/20110309

• 2011: Gaudet, et al. (2011). Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research, 39, D7-D10. eScholarID:124941 | DOI:10.1093/nar/gkq1173

• 2010: Schneider, M.V., Watson, J., Attwood, T.K., Rother, K., Budd, A., McDowall, J., Via, A., Fernandes, P., Nyronen, T., Blicher, T., Jones, P., Blatter, M-C., De Las Rivas, J., Judge, D.P., van der Gool W. & Brooksbank, C. (2010). 
Bioinformatics training: a review of challenges, actions and support requirements. Briefings in Bioinformatics, 11(6), 544-551. eScholarID:124939 | DOI:10.1093/bib/bbq021

• 2010: Hekkelman, M.L., te Beek, T.A.H., Pettifer, S., Thorne, D., Attwood, T.K. & Vriend, G. (2010). WIWS: a protein structure bioinformatics Web service collection. Nucleic Acids Res, 38(W7), 19-23. eScholarID:96717 | DOI:10.1093/nar/gkq453

• 2010: Maria Victoria Schneider, James Watson, Teresa Attwood, Kristian Rother, Aidan Budd, Jennifer McDowall, Allegra Via, Pedro Fernandes, Tommy Nyronen, Thomas Blicher, Phil Jones, Marie-Claude Blatter, Javier De Las Rivas, David Phillip Judge,Wouter van der Gool & Cath Brooksbank. (2010). Bioinformatics training: a review of challenges, actions and support requirements. Briefings in Bioinformatics, eScholarID:96719 | DOI:10.1093/bib/bbq021

• 2010: Mischak, et al. (2010). Recommendations for biomarker identification & classifier qualification in clinical proteomics. Science Translational Medicine, 2(46), eScholarID:96707 | DOI:10.1126/scitranslmed.3001249

• 2010: Attwood, T.K., Kell, D.B., McDermott, P., Marsh, J., Pettifer, S.R. & Thorne, D. (2010). Utopia Documents: linking scholarly literature with research data. Bioinformatics, 26, i568-i574. eScholarID:96699 | DOI:10.1093/bioinformatics/btq383

• 2010: Pettifer, S., Ison, J., Kalas, M., Thorne, D., McDermott, P., Jonassen, I., Liaquat, A., Fernandez, J.M., Rodriguez, J.M., Partners, I., Pisano, D.G., Blanchet, C., Uludag, M., Rice, P., Bartaseviciute, E., Rapacki, K., Hekkelman, M., Sand, O., Stockinger, H., Clegg, A.B., Bongcam-Rudloff, E., Salzemann, J., Breton, V., Attwood, T.K., Cameron, G. & Vriend, G. (2010). The EMBRACE web service collection. Nucleic Acids Res, 38, W683-W688. eScholarID:96715 | DOI:10.1093/nar/gkq297

• 2010: Gaudet, et al. (2010). Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res, eScholarID:96703 | DOI:10.1093/nar/gkq1173

• 2010: Coletta, A., Pinney, J.W., Weiss Solis, D.Y., Marsh, J., Pettifer, S.R. & Attwood, T.K. (2010). Low-complexity regions within protein sequences have position-dependent roles. BMC Syst. Biol, 4(1), 43. eScholarID:96718 | DOI:10.1186/1752-0509-4-43

• 2009: Hunter, S., Apweiler, R., Attwood, T.K., Bairoch, A., Bateman, A., Binns, D., Bork, P., Das, U., Daugherty, L., Duquenne, L., Finn, R., Gough, J., Haft, D., Hulo, N., Kahn, D., Kelly, E., Laugraud, A., Letunic, I., Lonsdale, D., Lopez, R., Madera, M., Maslen, J., McAnulla, C., McDowall, J., Mistry, J., Mitchell, A., Mulder, N., Natale, D., Orengo, C., Quinn, A.F., Selengut, J.D., Sigrist, C.J.A., Thimma, M., Thomas, P.D., Valentin, F., Wilson, D., Wu, C.H. & Yeats, C. (2009). InterPro: the integrative protein signature database. Nucleic Acids Res, 37, D211-D215. eScholarID:96686 | DOI:10.1093/nar/gkn785

• 2009: Attwood, T.K., Kell, D.B., McDermott, P., Marsh, J., Pettifer, S.R. & Thorne, D. (2009). Knowledge lost in literature and data landslide: calling international rescue!. The Biochemist, 23-38. eScholarID:96694 | DOI:10.1042/BJ20091474

• 2009: Mabey Gilsenan, J., Atherton, G., Bartholomew, J., Giles, P.F., Attwood, T.K., Denning, D.W., Bowyer, P. (2009). Aspergillus Genomes and The Aspergillus Cloud.
. Nucleic Acids Research, 37, D509-D514. eScholarID:66556 | DOI:10.1093/nar/gkn876

• 2009: Pettifer, S., Thorne, D., McDermott, P., Attwood, T., Baran, J., Bryne, J.C., Hupponen, T., Mowbray, D., Vriend, G. (2009). An active registry for bioinformatics Web services. Bioinformatics, 25, 2090-2091. eScholarID:66541 | DOI:10.1093/bioinformatics/btp329

• 2009: Pettifer, S., Thorne, D., McDermott, P., Marsh, J., Villeger, A., Kell, D.B., Attwood, T.K. (2009). Visualising biological data: a semantic approach to tool and database integration. BMC Bioinformatics, 10, S18. eScholarID:66532 | DOI:10.1186/1471-2105-10-S6-S19

• 2008: Park, H., Huxley-Jones, J., Boot-Handford, R., Bishop, P., Attwood, T. & Bella, J (2008). LRRCE: a leucine-rich repeat cysteine capping motif unique to the chordate lineage. BMC Genomics, 9, 19. eScholarID:1f159 | DOI:10.1186/1471-2164-9-599

• 2008: Vlahou, A., Schanstra, J., Frokiaer, J., El Nahas, M., Spasovski, G., Mischak, J., Domon, B., Allmaier, G., Bongcam-Rudloff, E., Attwood, T.K. (2008). Establishment of a European Network for Urine and Kidney Proteomics. Journal of Proteomics, 71(4), 490-492. eScholarID:1c8366 | DOI:10.1016/j.jprot.2008.06.009

• 2008: Pettifer, S., Thorne, D., McDermott, P., Attwood, T., Baran, J., Bryne, J.C., Hupponen, T. & Vriend, G. (2008). The EMBRACE registry. EMBnet.news, 14(4), 58-62. eScholarID:111673

• 2008: Stockinger, H., Attwood, T.K., Chohan, S.N., Cote, R., Cudre-Mauroux, P., Falquet, L., Fernandes, P., Finn, R.D., Hupponen, T., Korpelainen, E., Labarga, A., Laugraud, A., Lima, T., Pafilis, E., Pagni, M., Pettifer, S., Phan, I., Rahman, N. (2008). Experience using Web services for biological sequence analysis. Briefings in Bioinformatics, 9(6), 493-505. eScholarID:1c8367 | DOI:10.1093/bib/bbn029

• 2007: Nordle, A.K.L., Rios, P., Gaulton, A., Pulido, R., Attwood, T.K., Tabernero, L. (2007). (2007). Functional assignment of MAPK phosphatase domains. PROTEINS: Structure, Function and Bioinformatics, 69(1), 19-31. eScholarID:1c6532

• 2007: Pettifer, S., Attwood, T.K., McDermott, P., Sinnott, J., Thorne, D. (2007). UTOPIA: User-friendly Tools for OPerating Informatics Applications. European Molecular Biology Network News, 13(2), 19-24. eScholarID:1c7375

• 2007: Corpas, C., Sinnott, J., Thorne, D., Pettifer, S., Attwood, T.K. (2007). PFF - an integrated database of residues and fragments critical for protein folding. BMC Systems Biology, 1(1), 48. eScholarID:1c7376

• 2007: Kim, J-H, Mitchell, AL, Attwood, TK, Hilario, M. (2007). Learning to extract relations for protein annotation. Bioinformatics, 23(13), i256-i263. eScholarID:1c6535

• 2007: Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Binns D, Bork P, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Haft D, Hulo N, Hunter S, Kanapin A, Kejariwal A, Labarga A, et al. (2007). New developments in the InterPro database. Nucleic Acids Research, 35, D224-228. eScholarID:1c5709 | DOI:10.1093/nar/gkl841

• 2007: Roma-Mateo C, Rios P, Tabernero L, Attwood TK and Pulido R. (2007). A novel phosphatase family, structurally related to dual-specificity phosphatases, that displays unique amino acid sequence and substrate specificity. J. Mol. Biol, 374, 899-909. eScholarID:1c7116

• 2007: Park, H., Huxley-Jones, J., Attwood, T.K., Bella, J. (2007). LRRCE: a cysteine capping motif unique to small leucine-rich repeat proteins and proteoglycans of the extracellular matrix. BMC Systems Biology, 1(1), 55. eScholarID:1c7377

• 2007: Nordle, A., Rios, P., Gaulton, A., Pulido, R., Attwood, T. & Tabernero, L (2007). Functional assignment of MAPK phosphatase domains. Proteins, 69(1), 19-31. eScholarID:1f612 | DOI:10.1002/prot.21477

• 2007: Roma-Mateo, C., Rios, P., Tabernero, L., Attwood, T. & Pulido, R (2007). A novel phosphatase family, structurally related to dual-specificity phosphatases, that displays unique amino acid sequence and substrate specificity. J. Mol. Biol, 374(4), 899-909. eScholarID:1f587 | DOI:10.1016/j.jmb.2007.10.008

• 2007: Mulder, et al (2007). New developments in the InterPro database. Nucleic Acids Res, 35, D224-D228. eScholarID:1f621 | DOI:10.1093/nar/gkl841

• 2006: Taylor, P.D., Toseland, C.P., Attwood, T.K., Flower, D.R. (2006). Toward bacterial protein sub-cellular location prediction: single-class discrimminant models for all Gram- and Gram+ compartments. Bioinformation, 1(8), 276-280. eScholarID:1c6530

• 2006: Taylor, P.D., Toseland, C.P., Attwood, T.K., Flower, D.R. (2006). Combining algorithms to predict Bacterial protein sub-cellular location: Parallel versus Concurrent implementations. Bioinformation, 1(8), 285-289. eScholarID:1c6531

• 2006: Taylor, P.D., Attwood, T.K., Flower, D.R. (2006). Multi-class subcellular location prediction for bacterial proteins. Bioinformation, 1(7), 260-264. eScholarID:1c6529

• 2006: Taylor PD, Toseland CP, Attwood TK, Flower DR. (2006). TATPred: a Bayesian method for the identification of twin arginine translocation pathway signal sequences. Bioinformation, 1(5), 184-187. eScholarID:1c5715

• 2006: Taylor PD, Toseland CP, Attwood TK, Flower DR. (2006). Alpha Helical Transmembrane Proteins: Enhanced prediction using a Bayesian approach. Bioinformation, 1(6), 234-236. eScholarID:1c5712

• 2006: Taylor PD, Toseland CP, Attwood TK, Flower DR. (2006). Beta Barrel Transmembrane Proteins: Enhanced prediction using a Bayesian approach. Bioinformation, 1(6), 231-233. eScholarID:1c5708

• 2006: Taylor P, Toseland, CP, Attwood TK, Flower DR. (2006). LIPPRED: A web server for accurate prediction of lipoprotein signal sequences and cleavage sites. Bioinformation, 1(5), 176-179. eScholarID:1c3769

• 2006: Taylor PD, Toseland CP, Attwood TK, Flower DR. (2006). A Predictor of Membrane Class: Discriminating a-helical and ß-barrel membrane proteins from non-membranous proteins. Bioinformation, 1(6), 208-213. eScholarID:1c5714

• 2005: Mitchell AL, Divoli A, Kim JH, Hilario M, Selimas I, Attwood TK. (2005). METIS: multiple extraction techniques for informative sentences. Bioinformatics (Oxford, England), 21(22), 4196-4197. eScholarID:1c6536 | DOI:10.1093/bioinformatics/bti675

• 2005: Divoli A, Attwood TK. (2005). BiolE sentences - Extracting informative sentences from the biomedical literature. Bioinformatics (Oxford, England), 21(9), 2138-9. eScholarID:1c3633 | DOI:10.1093/bioinformatics/bti296

• 2005: Attwood TK, Selimas I, Buis R, Altenburg R, Herzog R, Ledent V, Ghita V, Fernandes P, Marques I, Brugman M. (2005). EMBER - A European Multimedia Bioinformatics Educational Resource. Bee-J, 6, 4-18. eScholarID:1c3770

• 2005: Mulder NJ, Apweiler R, Attwood TK, Bairoch A et al. (2005). InterPro, progress and status in 2005. Nucleic acids research, 33, D201-5. eScholarID:1c3632 | DOI:10.1093/nar/gki106

• 2005: Farhan R, Aplin JD, Attwood TK, Sibley C. (2005). Retrieving reproductive biology literature using natural language processing. Placenta, 26(8-9), A22. eScholarID:1c5722

• 2004: Mabey, JE, Anderson, MJ, Giles, PF, Miller, C, Attwood, T, Paton, NW, Bronberg-Bauer, E, Robson, GD, Oliver, SG, Denning, DW. (2004). CADRE: the Central Aspergillus Data REpository. Nucleic Acids Research, 32, D4101-D405. eScholarID:1d18444 | DOI:10.1093/nar/gkh009

• 2004: Farhan R, Atwood TK, McGee-Wood M, Aplin J, Sibley C. (2004). Information retrieval and natural language processing techniques applied to reproductive biology. Conf. Paper: Proc. 7th Ann. Colloquium for the UK Special Interest Group for Computational Linguistics, Birmingham, 1, pp56-61. eScholarID:1c3644

• 2004: Maudling N, Attwood TK. (2004). FAN: fingerprint analysis of nucleotide sequences. Nucleic acids research, 32, W620-623. eScholarID:1c3635 | DOI:10.1093/nar/gkh457

• 2004: Flower DR, Attwood TK. (2004). Integrative bioinformatics for functional genome annotation: trawling for G protein-coupled receptors. Seminars in cell and developmental biology, 15(6), 693-701. eScholarID:1c3634

• 2004: Hilario M, Mitchell AL, Kim JH, Bradley P, Atwood TK. (2004). Classifying protein fingerprints. Conf. Paper: Proc. 8th European Conference on Principles and Practice of Knowledge Discovery in Databases, Pisa, Italy, PKDD-04, 1. eScholarID:1c3639

• 2004: Pettifer SR, Sinott JR, Attwood TK. (2004). UTOPIA - User-friendly tools for operating informatics applications. Comparative and Functional Genomics, 5(1), 56-60. eScholarID:1c3631 | DOI:10.1002/cfg.359

• 2004: Pettifer SR, Sinnott JR, Attwood TK. (2004). CINEMA - a UTOPIAn sequence editor. Collaborative Computational Project 11 News, 10, .. eScholarID:1c5764

• 2004: Attwood TK, Selimas I, Buis R, Altenburg R, Herzog R, Ledent V, Ghita V, Fernandes P, Marques I, Brugman M. (2004). EMBER - A European Bioinformatics Educational Resource. Learning and Teaching Support Network Bioscience Bulletin, 13, 8-9. eScholarID:1c5765

• 2004: Mabey JE, Anderson MJ, Giles PF, Miller CJ, Attwood TK, Paton NW, Bornberg-Bauer E, Robson GD, Oliver SG, Denning DW. (2004). CADRE: the Central Aspergillus Data REpository. Nucleic acids research, 32, D401-405. eScholarID:1c2134 | DOI:10.1093/nar/gkh009

• 2003: Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM. (2003). The InterPro Database, 2003 brings increased coverage and new features. Nucleic acids research, 31(1), 315-8. eScholarID:1c1361 | DOI:10.1093/nar/gkg046

• 2003: Attwood TK. (2003). Focus on UMBER - University of Manchester Bioinformatics, Education & Research. European Molecular Biology Network News, 9(1), 3-8. eScholarID:1c5766

• 2003: Mitchell AL, Reich JR, Attwood TK. (2003). PRECIS: protein reports engineered from concise information in SWISS-PROT. Bioinformatics (Oxford, England), 19(13), 1664-71. eScholarID:1c1355 | DOI:10.1093/bioinformatics/btg204

• 2003: Taylor PD, Attwood TK, Flower DR. (2003). BPROMPT: A consensus server for membrane protein prediction. Nucleic acids research, 31(13), 3698-700. eScholarID:1c1356 | DOI:10.1093/nar/gkg554

• 2003: Attwood TK, Bradley P, Flower DR, Gaulton A, Maudling N, Mitchell AL, Moulton G, Nordle A, Paine K, Taylor P, Uddin A, Zygouri C. (2003). PRINTS and its automatic supplement, prePRINTS. Nucleic acids research, 31(1), 400-2. eScholarID:1c1360 | DOI:10.1093/nar/gkg030

• 2003: Gaulton A, Attwood TK. (2003). Bioinformatics approaches for the classification of G-protein-coupled receptors. Current opinion in pharmacology, 3(2), 114-20. eScholarID:1c1358 | DOI:10.1016/S1471-4892(03)00005-5

• 2003: Miller CJ, Attwood TK. (2003). Bioinformatics goes back to the future. Nature reviews. Molecular cell biology, 4(2), 157-62. eScholarID:1c1359 | DOI:10.1038/nrm1013

• 2003: Gaulton A, Attwood TK. (2003). Motif3D: Relating protein sequence motifs to 3D structure. Nucleic acids research, 31(13), 3333-6. eScholarID:1c1357 | DOI:10.1093/nar/gkg534

• 2003: Attwood TK. (2003). Bioinformatics - what use is it? Biol Sci Rev, 15(4), 2-5. eScholarID:1c3637

• 2003: Attwood TK, Parry-Smith DJ, Moulton G, Packer JC. (2003). Phylogenomic analysis and evolution of the potassium channel gene family. Receptors and channels, 9(6), 363-77. eScholarID:1c2559

• 2003: Attwood TK. (2003). What is bioinformatics? Biol Sci Rev, 15(3), 13-15. eScholarID:1c3636

• 2002: Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, Gouzy J, Griffith-Jones S, Haft D, Hermjakob H, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Orchard S, Pagni M, Peyruc D, Ponting CP, Servant F, Sigrist CJ. (2002). InterPro: an integrated documentation resource for protein families, domains and functional sites. Briefings in bioinformatics, 3(3), 225-35. eScholarID:1c1365

• 2002: Attwood TK, Blythe MJ, Flower DR, Gaulton A, Mabey JE, Maudling N, McGregor L, Mitchell AL, Moulton G, Paine K, Scordis P. (2002). PRINTS and PRINTS-S shed light on protein ancestry. Nucleic acids research, 30(1), 239-41. eScholarID:1c1367 | DOI:10.1093/nar/30.1.239

• 2002: Attwood TK. (2002). The PRINTS database: a resource for identification of protein families. Briefings in bioinformatics, 3(3), 252-63. eScholarID:1c1364 | DOI:10.1093/bib/3.3.252

• 2002: Lord PW, Selley JN, Attwood TK. (2002). CINEMA-MX: a modular multiple alignment editor. Bioinformatics (Oxford, England), 18(10), 1402-3. eScholarID:1c1363 | DOI:10.1093/bioinformatics/18.10.1402

• 2002: Attwood TK, Miller CJ. (2002). Progress in bioinformatics and the importance of being earnest. Biotechnol Annu Rev, 8, 1-54. eScholarID:1c1362

• 2002: Attwood TK, Croning MD, Gaulton A. (2002). Deriving structural and functional insights from a ligand-based hierarchical classification of G protein-coupled receptors. Protein engineering, 15(1), 7-12. eScholarID:1c1366 | DOI:10.1093/protein/15.1.7

• 2002: Attwood TK. (2002). Bugging cancer with COBALT. Trends in Biotechnology, 20(3), 95. eScholarID:1c5754 | DOI:10.1016/S0167-7799(02)01945-5

• 2002: Attwood TK. (2002). Metals in prion disease. Trends in biotechnology, 20(6), 235. eScholarID:1c5776 | DOI:10.1016/S0167-7799(02)01972-8

• 2002: Attwood TK. (2002). Rhodopsin sheds light on neurodegenerative disease. Trends in biotechnology, 20(10), 415. eScholarID:1c5777 | DOI:10.1016/S0167-7799(02)02055-3

• 2002: Attwood TK. (2002). EMBER - A European Multimedia Bioinformatics Educational Resource. European Molecular Biology Network News, 8(1), 15-19. eScholarID:1c5767

• 2002: Attwood, T, Blythe, MJ, Flower, DR, Gaulton, A, Mabey, JE, Maudling, N, McGregor, L, Mitchell, AL, Moulton, G, Paine, K, Scordis, P. (2002). PRINTS and PRINTS-S shed light on protein ancestry. Nucleic Acids Research, 30, 239-41. eScholarID:1d18448

• 2001: Mabey JE, Attwood T. (2001). EMBER: a European Multimedia Bioinformatics Education Resource. CAL-laborate, 6, 13-7. eScholarID:1d18452

• 2001: Attwood TK. (2001). A compendium of specific motifs for diagnosing GPCR subtypes. Trends in pharmacological sciences, 22(4), 162-5. eScholarID:1c1371 | DOI:10.1016/S0165-6147(00)01658-8

• 2001: Reich JR, Mitchell A, Goble CA, Attwood TK. (2001). PRECIS: Protein reports engineered from concise information in SWISS-PROT. IEEE Intelligent Systems, 16(6), 42-51. eScholarID:1c3638 | DOI:10.1109/5254.972083

• 2001: Attwood TK. (2001). Looking slim: peripherin/rds and photoreceptor cell morphology. Trends in Biotechnology, 19(2), 40. eScholarID:1c5780 | DOI:10.1016/S0167-7799(00)01524-9

• 2001: Attwood TK. (2001). A new dimension in the CJD epidemic. Trends in Biotechnology, 19(8-9), 283. eScholarID:1c5779 | DOI:10.1016/S0167-7799(01)01738-3

• 2001: Sinnott JR, Pettifer S, Attwood TK. (2001). Introduction to the CINEMA5 sequence alignment editor. European Molecular Biology Network News, 10, .. eScholarID:1c5763

• 2001: Mabey JE, Attwood TK. (2001). EMBER: a European Multimedia Bioinformatics Educational Resource. CAL-laborate: A collaborative publication on the use of CAL for tertiary-level physical sciences, 6, 13-16. eScholarID:1c5769

• 2001: Attwood TK. (2001). A European Multimedia Bioinformatics Educational Resource (EMBER). Learning and Teaching Support Network Bioscience Bulletin, 4, 9. eScholarID:1c5768

• 2001: Vaughan S, Attwood TK, Navarro M, Scott V, McKean P, Gull K. (2001). New tubulins in protozoal parasites. Current Biology, 10(7), R258-259. eScholarID:1c5755 | DOI:10.1016/S0960-9822(00)00414-0

• 2001: Attwood TK. (2001). A new dimension to the vCJD epidemic: multiple QTL. Trends in Genetics, 17(8-9), 439. eScholarID:1c5778 | DOI:10.1016/S0168-9525(01)02421-0

• 2001: Ellis LB, Attwood TK. (2001). Molecular biology databases: today and tomorrow. Drug discovery today, 6(10), 509-513. eScholarID:1c1370 | DOI:10.1016/S1359-6446(01)01802-5

• 2001: Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM. (2001). The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic acids research, 29(1), 37-40. eScholarID:1c1377 | DOI:10.1093/nar/29.1.37

• 2001: Selley JN, Swift J, Attwood TK. (2001). EASY - an Expert Analysis SYstem for interpreting database search outputs. Bioinformatics (Oxford, England), 17(1), 105-6. eScholarID:1c1372 | DOI:10.1093/bioinformatics/17.1.105

• 2001: Attwood TK, Miller CJ. (2001). Which craft is best in bioinformatics? Computers and chemistry, 25(4), 329-39. eScholarID:1c1369 | DOI:10.1016/S0097-8485(01)00069-9

• 2000: Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Bucher P, Codani JJ, Corpet, Croning MDR, Durbin R, Etzold T, Fleischmann W, Gouzy J, Hermjakob H, Jonassen I, Kahn D, Kanapin A, Schneider R, Servant F, Zdobnov E. (2000). InterPro - An integrated documentation resource for protein families, domains and functional sites. Collaborative computational Project 11 News, 10, .. eScholarID:1c5771

• 2000: Attwood TK. (2000). An interactive practical at the interface of Web-based and conventional publishing. CAL-laborate: A collaborative publication on the use of CAL for tertiary-level physical sciences, 4, 1-6. eScholarID:1c5772

• 2000: Attwood TK. (2000). The quest to deduce protein function from sequence: the role of pattern databases. The international journal of biochemistry and cell biology, 32(2), 139-55. eScholarID:1c1376 | DOI:10.1016/S1357-2725(99)00106-5

• 2000: Attwood TK. (2000). Focus on UMBER - University of Manchester Bioinformatics Education and Research. European Molecular Biology Network News, 7(1), .. eScholarID:1c5770

• 2000: Attwood TK. (2000). The Babel of bioinformatics. Science, 290(5491), 471-3. eScholarID:1c1373 | DOI:10.1126/science.290.5491.471

• 2000: Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM. (2000). InterPro - an integrated documentation resource for protein families, domains and functional sites. Bioinformatics (Oxford, England), 16(12), 1145-50. eScholarID:1c1374 | DOI:10.1093/bioinformatics/16.12.1145

• 2000: Attwood TK. (2000). Bridging the gap with ORF ESTs. Trends in biotechnology, 18(9), 363. eScholarID:1c1375 | DOI:10.1016/S0167-7799(00)01480-3

• 2000: Attwood TK, Croning MD, Flower DR, Lewis AP, Mabey JE, Scordis P, Selley JN, Wright W. (2000). PRINTS-S: the database formerly known as PRINTS. Nucleic acids research, 28(1), 225-7. eScholarID:1c1378 | DOI:10.1093/nar/28.1.225

• 2000: Attwood TK. (2000). The role of pattern databases in sequence analysis. Briefings in bioinformatics, 1(1), 45-59. eScholarID:1c1368 | DOI:10.1093/bib/1.1.45

• 2000: Attwood T, Croning MD, Flower DR, Lewis AP, Mabey JE, Scordis P, Selley JN, Wright W. (2000). PRINTS-S: the database formerly known as PRINTS. Nucleic Acids Research, 28, 225-7. eScholarID:1d18450

• 1999: Attwood T, Flower DR, Lewis AP, Mabey JE, Morgan SR, Scordis P, Selley JN, Wright W. (1999). PRINTS prepares for the new millennium. Nucleic Acids Research, 27, 220-5. eScholarID:1d18446

• 1997: Attwood TK, Avison H, Beck ME, Bewley M, Bleasby AJ, Brewster F, Cooper P, Degtyarenko K, Geddes AJ, Flower DR, Kelly MP, Lott S, Measures KM, Parry-Smith DJ, Perkins DN, Scordis P, Scott D, Worledge C. (1997). The PRINTS database of protein fingerprints: a novel information resource for computational molecular biology. Journal of chemical information and computer sciences, 37(3), 417-24. eScholarID:1c1354 | DOI:10.1021/ci960468e

• 1900: Via, A., De Las Rivas, J., Attwood, T.K., Landsman, D., Brazas, M.D., Leunissen, J.A.M., Tramontano, A. & Schneider, M.V. 10 simple rules for developing a short bioinformatics training courses. 
PLoS Computational Biology, eScholarID:130615

• 1900: Schneider, M.V., Walter, P., Blatter, M.C., Watson, J., Brazas, M.D., Rother, K., Budd, A., Via, A., van Gelder, C.W.G., Jacob, J., Fernandes, P., Nyronen, T., De Las Rivas, J., Blicher, T., Loveland, J., McDowall, J., Jones, P., Vaughan, B., Lopez, R., Attwood, T.K. & Brooksbank, C. Bioinformatics Training Network (BTN): A community resource for bioinformatics trainers. Briefings in Bioinformatics, eScholarID:130614

Teresa Attwood - Journal contribution

• 2009: Vlahou, A., Allmaier, G., Attwood, T.K., Bongcam-Rudloff, E., Charonis, A., Frokiaer, J., Mischak, H., Schanstra, J.P. & Spasovski, G. (2009). 2nd Combined Working Group and Management Committee Meeting of Urine and Kidney Proteomics COST Action 29-30 March 2009, Nafplio, Greece. Proteomics Clin.Appl, 3(9), 1017-1022. eScholarID:101109

• 2009: Attwood, T.K. (2009). UMBER - University of Manchester Bioinformatics Education & Research. EMBnet.journal, 15(4), 41-42. eScholarID:96684

• 2009: Attwood, T.K., Kell, D.B., McDermott, P., Marsh, J., Pettifer, S.R. & Thorne, D. (2009). Utopia Documents and The Semantic Biochemical Journal experiment. EMBnet.journal, 15(4), 3-6. eScholarID:96685

Teresa Attwood - Conference contribution

• 2007: Kim, J., Mitchell, A., Attwood, T. & Hilario, M (2007). Learning to extract relations for protein annotation. Presented at 15th Conference on Intelligent Systems for Molecular Biology/6th European Conference on Computation Biology. Vienna, AUSTRIA: Oxford Univ Press. eScholarID:2f147 | DOI:10.1093/bioinformatics/btm168

• 2007: Pettifer, S., Attwood, T.K. (2007). Progress with UTOPIA. eScholarID:2c218

• 2007: Pettifer SR, Attwood TK, Thorne D, Sinnott J, Li P, McDermott P, Oinn P, Alper P, Goble CA, Wolstencroft K. (2007). myGrid and UTOPIA: an integrated approach to enacting and visualising in silico experiments in the life sciences. eScholarID:2c196

• 2007: Moulton, G., Selimas, I., Attwood, T.K. (2007). EMBER - A European Bioinformatics E-learning Resource. eScholarID:2c219

• 2006: Mitchell AL, Selimas I, Attwood TK. (2006). Challenges for protein family annotation. eScholarID:2c175

• 2006: McDermott P, Sinnott J, Thorne D, Pettifer S, Attwood TK. (2006). An architecture for visualisation and interactive analysis of proteins. eScholarID:2c176

• 2006: Attwood TK. (2006). Seeking functional clues in GPCR sequences and structures: cautionary tales for bioinformatics (Keynote). eScholarID:2c185

• 2005: JE Mabey Gilsenan, MJ Anderson, TK Attwood, SG Oliver, NW Paton, GD Robson, DW Denning. (2005). Viewing annotated aspergillus genomes on the central aspergillus data repository (CADRE) website. eScholarID:2c124

• 2005: Divoli A, Attwood TK. (2005). Text-mining challenges for protein family database annotation. eScholarID:2c178

• 2005: Divoli A, Winter R, Pettifer S, Attwood TK. (2005). BioQSpace: An interactive visualisation tool for clustering MEDLINE abstracts. eScholarID:2c180

• 2005: Corpas M, Thorne D, Sinnott J, Pettifer S, Attwood TK. (2005). An integrated approach to structural and functional motif prediction. eScholarID:2c179

• 2005: Divoli A, Attwood TK. (2005). Protein family databases: text-mining and annotation. eScholarID:2c177

• 2004: Walker N, Attwood TK, Sharrocks AD. (2004). Use of an integrated rule system for identification of the transcription factor binding sites for MCM1 and FKH2 in S.cerevisiae. eScholarID:2c114

• 2004: Divoli A, Mitchell AL, Bradley P, Attwood TK. (2004). METIS: Multiple Extraction Techniques for Informative Sentences. eScholarID:2c181

• 2004: Attwood TK, Bradley P, Daelemans W, Dehaspe L, Durant F, Hilario M, Kim J-H, Mitchell AL, Petrak J, Pillet V, Seewald AK, Van Belleghem K, Veuthey AL, Zehnder M. (2004). BioMinT: a database curator's assistant for biomedical text processing. eScholarID:2c182

• 2004: Attwood TK, Mitchell AL. (2004). PRINTS and its automatic supplement, prePRINTS. eScholarID:2c183

• 2004: Ghita V, Ledent V, Herzog R, Attwood TK, Selimas I, Brugman M. (2004). EMBER - A new tutorial on sequence analysis and bio computing. eScholarID:2c111

• 2004: Walker, N, Attwood TK, Sharrocks AD. (2004). A rule based system for the identification of transcription factor binding sites in S.cerevisiae. eScholarID:2c113

• 2002: Attwood TK. (2002). Bioinformatics: gene - protein - structure - function. eScholarID:2c115

• 2002: Pettifer S, Attwood TK, Sinnott JR, Vass N, Corpas M. (2002). UTOPIA: User-friendly Tools for OPerating Informatics Applications. eScholarID:2c184

• 2001: Lord P, Reich JR, Mitchell AL, Stevens R, Attwood TK, Goble C. (2001). PRECIS: An automated pipeline for producing concise protein reports. eScholarID:2c117

• 2001: Ellis LBM, Attwood TK. (2001). Emerging US & UK Standards for Graduate Bioinformatics Training. eScholarID:2c119

• 2001: Miller CJ, Atwood TK. (2001). PSST ... The probabilistic sequence search tool. eScholarID:2c116

• 2001: Attwood TK. (2001). Protein pattern databases (Keynote). eScholarID:2c118

• 2001: Jongeneel CV, Attwood TK et al. (2001). EMBER - a European Multimedia Bioinformatics Educational Resource. eScholarID:2c120

Teresa Attwood - Book

• 2008: Higgs, P., Attwood, T.K. (2008). Bioinformatyka i ewolucja molekularna (Bioinformatics and Molecular Evolution). Blackwell Science Ltd. eScholarID:4c156

• 2007: Attwood, T.K., Parry-Smith, D.J., Phukan, S. (2007). Introduction to Bioinformatics. Pearson Education, South Asia. eScholarID:4c144

• 2006: Richard Cammack, Teresa Atwood, Peter Campbell, Howard Parish, Tony Smith, John Stirling and Frank Vella. Richard Cammack, Teresa Atwood, Peter Campbell, Howard Parish, Tony Smith, John Stirling and Frank Vella. (Ed.) (2006). Oxford Dictionary of Biochemistry and Molecular Biology, Second Edition. Oxford University Press. eScholarID:111690

• 2005: Attwood TK. (Ed.) (2005). European Multimedia Bioinformatics Educational Resource - A Practical Guide to Bioinformatics. ETI Information Services Ltd, Amsterdam. eScholarID:4c120

• 2005: Higgs P, Atwood TK. (2005). Bioinformatics & Molecular Evolution. Blackwell publishing. eScholarID:4c79

• 2005: Cammack R. Attwood TK. (Ed.) (2005). Oxford Dictionary of Biochemistry and Molecular Biology. Oxford University Press. eScholarID:4c85

• 2004: Aloy P, Apweiler R, Atwood TK. (2004). Dictionary of Bioinformatics and computational biology. John Wiley and Sons. eScholarID:4c80

• 2003: Attwood TK, Parry-Smith DJ. (2003). Introduction to Bioinformatics. Pearson Education Taiwan Ltd. eScholarID:4c23

• 2002: Attwood TK, Parry-Smith DJ. (2002). Introduction to Bioinformatics. Pearson Educacion, SA, Madrid, Spain. eScholarID:4c118

• 2002: Attwood TK, Parry-Smith DJ. (2002). Introduction to Bioinformatics. Peking University Press. eScholarID:4c81

• 2001: Attwood TK, Parry-Smith, DJ. (2001). Introduction to Bioinformatics. Pearson Education Asia, Deli, India. eScholarID:4c119

Teresa Attwood - Book contribution

• 2009: Attwood, T.K., Selimas, I., Buis, R., Altenburg, R., Herzog, R., Ledent, V., Ghita, V., Fernandes, P., Marques, I. & Brugman, M. (2009). EMBER - A European Multimedia Bioinformatics Educational Resource. In S.Maw (Ed.), Bioscience Education. (pp. 167-178). eScholarID:96682

• 2007: Attwood TK, Mitchell AL, Gaulton A, Moulton G, Tabernero L. (2007). The PRINTS protein fingerprint database: functional and evolutionary applications. In Apweiler R (Ed.), Encyclopaedia of genetics, genomics, proteomics & bioinformatics. (pp. 8). John Wiley and Sons. eScholarID:3c187

• 2007: Attwood, T.K. (2007). Genetic databases. In Cooper, D (Ed.), Encyclopaedia of Life Sciences. John Wiley and Sons. eScholarID:3c249

• 2005: Pettifer SR, Sinnott J, Attwood TK. (2005). Integrated approaches for bioinformatics data analysis and visualisation - challenges, opportunities and new solutions. In Dopiazo J (Ed.), Data analysis & visualisation in genomics & proteomics. (pp. 12). John Wiley and Sons. eScholarID:3c188

• 2004: Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P et al. (2004). InterPro - prediction of protein families, domains and functional sites. Focus on Genome Research. (pp. 169-205). Nova Science Publishers, New York. eScholarID:3c71

• 2004: Attwood TK, Bradley P, Gaulton A, Maudling N, Mitchell AL, & Moulton G. (2004). The PRINTS protein fingerprint database: functional and evolutionary applications. Encyclopaedia of genetics, genomics, proteomics & bioinformatics. (pp. 6). John Wiley and Sons. eScholarID:3c74

• 2003: Attwood TK. (2003). Genetic databases. Encyclopaedia of the human genome. (pp. 10). Nature Publishing Group. eScholarID:3c30

• 2002: Attwood TK, Flower DR. (2002). Trawling the genome for G protein-coupled receptors: the importance of integrating bioinformatic approaches. Drug Design - Cutting Edge Approaches. (pp. 60-71). John Wiley and Sons. eScholarID:3c73

• 2001: Atwood TK. (2001). Mobile, metamorphosing academic databases - capturing IP on the move. Managing IPR in a knowledge-based economy. (pp. 4-7). European Commission Research Directorate General. eScholarID:3c72

• 2001: Crespi S, Attwood TK, Bates M, Dendekgey L, Callan B, Cameron G, De Clerq A, Franklin J, Gannon B, Hammer Jensen B, Leunissen JAM, Mueller-Gerger T, Kamperman Sanders A, Tschannen R, van Grevenstein PVU. (2001). Bioinformatics and the influence of public policy. In Marcus M (Ed.), Managing IPR in a knowledge-based economy. (pp. 1-10). European Commission Research Directorate General. eScholarID:3c186

• 1900: Attwood, T.K., Gisel, A., Eriksson, N-E. & Bongcam-Rudloff, E. Concepts, historical milestones and the central place of bioinformatics in modern biology: a European perspective. Intech Online Publishers. eScholarID:130613

Ali Ahmed - Thesis (University required)

• 2010: Ahmed, Ali Ahmed Ali. (2010). CONTEXT-AWARE ACCESS CONTROL IN UBIQUITOUS COMPUTING (CRAAC). Manchester, UK: The University of Manchester. eScholarID:90300

Marios Alexandrou - Thesis (University required)

• 2011: Alexandrou, Marios. (2011). MAGNETO-OPTIC KERR AND HALL EFFECT MEASUREMENTS FOR THE CHARACTERISATION OF BIT PATTERNED MEDIA. Manchester, UK: The University of Manchester. eScholarID:121101

Mauricio Alvarez - Thesis (University required)

• 2011: Alvarez, Mauricio. (2011). Convolved Gaussian Process Priors for multivariate regression with applications to Dynamical Systems. Manchester, UK: The University of Manchester. eScholarID:123634

Richard Banach - Journal article

• 2012: R. Banach, C. Jeske, A. Hall, S. Stepney. (2012). Atomicity Failure and the Retrenchment Atomicity Pattern. Form. Asp. Comp, eScholarID:135708 | DOI:10.1007/s00165-011-0216-1

• 2012: R. Banach, M. Bozzano. (2012). The Mechanical Generation of Fault Trees for Reactive Systems via Retrenchment I: Combinational Circuits. Form. Asp. Comp, eScholarID:135710 | DOI:10.1007/s00165-011-0202-7

• 2012: R. Banach, M. Bozzano. (2012). The Mechanical Generation of Fault Trees for Reactive Systems via Retrenchment II: Clocked and Feedback Circuits. Form. Asp. Comp, eScholarID:135712 | DOI:10.1007/s00165-011-0203-6

• 2011: R. Banach, C. Jeske. (2011). Simple Feature Engineering via Neat Default Retrenchments. J. Log. Alg. Prog, 80, 453-480. eScholarID:135707 | DOI:10.1016/j.jlap.2010.12.001

• 2011: R. Banach. (2011). Retrenchment for Event-B: UseCase-wise Development and Rodin Integration. Formal Aspects of Computing, 23, 113-131. eScholarID:106682 | DOI:10.1007/s00165-009-0139-2

• 2010: R. Banach, G. Schellhorn. (2010). Atomic Actions and their Refinements to Isolated Protocols. Formal Aspects of Computing, 22, 33-61. eScholarID:94878 | DOI:10.1007/s00165-009-0103-1

• 2010: R. Banach, C. Jeske. (2010). Stronger Compositions for Retrenchments. J. Logic and Algebraic Programming, 79, 215-232. eScholarID:94879 | DOI:10.1016/j.jlap.2009.10.002

• 2008: Banach, R., Jeske, C. & Poppleton, A (2008). Composition mechanisms for retrenchment. J. Logic. Algebr. Program, 75(2), 209-229. eScholarID:1f479 | DOI:10.1016/j.jlap.2007.11.001

• 2008: Banach, R. & Schellhorn, G (2008). On the Refinement of Atomic Actions. Electr. Notes Theor. Comput. Sci, 201, 3-30. eScholarID:1h9 | DOI:10.1016/j.entcs.2008.02.013

• 2007: BANACH RH; POPPLETON M; JESKE C; STEPNEY S. (2007). Engineering and Theoretical Underpinnings of Retrenchment. Science of Computer Programming, 67(2-3), 301-329. eScholarID:1a10008 | DOI:10.1016/j.scico.2007.04.002

• 2007: BANACH RH; JESKE C; POPPLETON M; STEPNEY S. (2007). Retrenching the Purse: The Balance Enquiry Quandary, and Generalised and (1,1) Forward Refinements. Fundamenta Informaticae, 77(1-2), 29-69. eScholarID:1a10010

• 2007: Woodcock, J. & Banach, R (2007). The verification grand challenge. J. Univers. Comput. Sci, 13(5), 661-668. eScholarID:1f532

• 2007: Banach, R (2007). Formal methods - Guest editorial. J. Univers. Comput. Sci, 13(5), 593-601. eScholarID:1f765

• 2004: Banach, R (2004). Review: Process Algebra with Timing. J. Log. Comput, 14(6), 881. eScholarID:1h15 | DOI:10.1093/logcom/14.6.881

• 2003: Banach, R (2003). Review: Handbook of Process Algebra. J. Log. Comput, 13(6), 959-962. eScholarID:1h19 | DOI:10.1093/logcom/13.6.959

• 2003: Banach, R (2003). Review: Mathematics of Quantum Computation. J. Log. Comput, 13(6), 957-959. eScholarID:1h18 | DOI:10.1093/logcom/13.6.957

• 2003: BANACH RH; POPPLETON M. (2003). Retrenching Partial Requirements into System Definitions: A Simple Feature Interaction Case Study. Requirements Engineering, 8(4), 266-288. eScholarID:1a10009 | DOI:10.1007/s00766-002-0157-6

• 2003: Banach, R (2003). Book Review: "Refinement in Z and object-Z: Foundations and Advanced Applications" by John Derrick and Eerke Boiten. J. Log. Comput, 13(2), 313-314. eScholarID:1h16

• 2003: Banach, R. & Poppleton, M (2003). Retrenching partial requirements into system definitions: a simple feature interaction case study. Requir. Eng, 8(4), 266-288. eScholarID:1h21 | DOI:10.1007/s00766-002-0157-6

• 2003: Banach, R., Arbab, F., Papadopoulos, G. & Glauert, J (2003). A Multiply Hierarchical Automaton Semantics for the IWIM Coordination Model. J. UCS, 9(1), 2-33. eScholarID:1h20

• 2003: Banach, R (2003). Book Review: "Concurrency Verification: Introduction to Compositional and Non-compositional Methods" by Willem-Paul de Roever, Frank de Boer, Ulrich Hanneman, Jozef Hooman, Yassine Lakhnech, Mannes Poel and Job Zwiers (eds.). J. Log. Comput, 13(4), 625-627. eScholarID:1h17

• 2002: Banach, R., Arbab, F., Papadopoulos, G. & Glauert, J (2002). IWIM Semantics via Fibred Automata. Electr. Notes Theor. Comput. Sci, 66(4), eScholarID:1h22

• 2002: Banach, R (2002). Book Reviews. Softw. Test., Verif. Reliab, 12(4), 278. eScholarID:1h23 | DOI:10.1002/stvr.255

• 1999: Banach, R. & Poppleton, M (1999). Sharp Retrenchment, Modulated Refinement and Simulation. Formal Asp. Comput, 11(5), 498-540. eScholarID:1h24

• 1997: Banach, R (1997). MONSTR II - Suspending Semantics and Independence. J. UCS, 3(7), 756-801. eScholarID:1h27

• 1997: Banach, R (1997). MONSTR V - Transitive Coercing Semantics and the Church-Rosser Property. J. UCS, 3(12), 1283-1336. eScholarID:1h26

• 1997: Banach, R. & Papadopoulos, G (1997). A study of two graph rewriting formalisms: Interaction Nets and MONSTR. J. Prog. Lang, 5(1), 201-231. eScholarID:1h25

• 1996: Banach, R (1996). Transitive Term Graph Rewriting. Inf. Process. Lett, 60(3), 109-114. eScholarID:1h28 | DOI:10.1016/S0020-0190(96)00150-0

• 1996: Banach, R (1996). MONSTR I - Fundamental Issues and the Design of MONSTR. J. UCS, 2(4), 164-216. eScholarID:1h29

• 1995: Banach, R (1995). DPO rewriting and abstract semantics via opfibrations. Electr. Notes Theor. Comput. Sci, 2, eScholarID:1h31

• 1995: Banach, R., Balazs, J. & Papadoupolous, G (1995). A Translation of the Pi-Caculus Into MONSTR. J. UCS, 1(6), 339-398. eScholarID:1h32

• 1995: Banach, R (1995). Locating the Contractum in the Double Pushout Approach. Theor. Comput. Sci, 152(2), 305-320. eScholarID:1h34 | DOI:10.1016/0304-3975(94)00301-4

• 1995: Banach, R (1995). On Regularity in Software Design. Sci. Comput. Program, 24(3), 221-248. eScholarID:1h33

• 1995: Banach, R (1995). Sequent Reconstruction in LLM - A Sweepline Proof. Ann. Pure Appl. Logic, 73(3), 277-295. eScholarID:1h30

• 1994: Banach, R (1994). Regular Relations and Bicartesian Squares. Theor. Comput. Sci, 129(1), 187-192. eScholarID:1h35

• 1994: Banach, R (1994). Term Graph Rewriting and Garbage Collection Using Ppfibrations. Theor. Comput. Sci, 131(1), 29-94. eScholarID:1h36

Richard Banach - Conference contribution

• 2011: R. Banach, H. Zhu, W. Su, R. Huang. (2011). Formalising the Continuous/Discrete Modeling Step. Presented at Refine-11. Limerick, Ireland: EPTCS. eScholarID:135705

• 2010: R. Banach. (2010). A Deidealisation Semantics for KAOS. Presented at 25th Symposium On Applied Computing (RE track). Sierre, Switzerland: ACM. eScholarID:94876

• 2009: R. Banach. (2009). Coarse Grained Retrenchment and the Mondex Denial of Service Attacks. Presented at 3rd IEEE International Symposium on Theoretical Aspects of Software Engineering. IEEE. eScholarID:94875

• 2008: Banach, R (2008). UseCase-Wise Development: Retrenchment for Event-B. Presented at 1st International Conference of Abstract State Machines, B and Z. London, ENGLAND: Springer-Verlag Berlin. eScholarID:2f83

• 2008: Banach, R (2008). Model Based Refinement and the Tools of Tomorrow. Presented at 1st International Conference of Abstract State Machines, B and Z. London, ENGLAND: Springer-Verlag Berlin. eScholarID:2f84

• 2008: Schellhorn, G. & Banach, R (2008). A Concept-Driven Construction of the Mondex Protocol Using Three Refinements. Presented at Abstract State Machines, B and Z, First International Conference, ABZ 2008, London, UK, September 16-18, 2008. Proceedings. Springer. eScholarID:2h10 | DOI:10.1007/978-3-540-87603-8_6

• 2007: Richard Banach. (2007). Retrenchment Tutorial. Presented at Fifth IEEE International Conference on Software Engineering and Formal Methods (SEFM 2007), 10-14 September 2007, London, UK. London: IEEE Computer Society. eScholarID:39074

• 2007: Fraser, S. & Banach, R (2007). Configurable proof obligations in the frog toolkit. Presented at 5th IEEE International Conference on Software Engineering and Formal Methods. London, ENGLAND: Ieee Computer Soc. eScholarID:2f161

• 2007: Banach, R., Jeske, C., Hall, A. & Stepney, S (2007). Retrenchment and the atomicity pattern. Presented at 5th IEEE International Conference on Software Engineering and Formal Methods. London, ENGLAND: Ieee Computer Soc. eScholarID:2f192

• 2006: Banach, R., Poppleton, M. & Stepney, S (2006). Retrenching the Purse: Finite Exception Logs, and Validating the Small. Presented at 30th Annual IEEE / NASA Software Engineering Workshop (SEW-30 2006), 25-28 April 2006, Loyola College Graduate Center, Columbia, MD, USA. IEEE Computer Society. eScholarID:2h17

• 2006: Richard Banach. (2006). Retrenchment Tutorial. Presented at Fourth IEEE International Conference on Software Engineering and Formal Methods (SEFM 2007), 11-14 September 2006, Pune, India. IEEE Computer Society. eScholarID:64538

• 2006: BANACH RH; BOZZANO M. (2006). Retrenchment, and the Generation of Fault Trees for Static, Dynamic and Cyclic Systems. Springer. eScholarID:2a779 | DOI:10.1007/11875567_10

• 2006: Banach, R., Poppleton, M., Jeske, C. & Stepney, S (2006). Retrenching the Purse: Hashing Injective CLEAR Codes, and Security Properties. Presented at Leveraging Applications of Formal Methods, Second International Symposium, ISoLA 2006, Paphos, Cyprus, 15-19 November 2006. IEEE. eScholarID:2h13 | DOI:10.1109/ISoLA.2006.17

• 2006: Banach, R. & Derrick, J (2006). Filtering Retrenchments into Refinements. Presented at Fourth IEEE International Conference on Software Engineering and Formal Methods (SEFM 2006), 11-15 September 2006, Pune, India. IEEE Computer Society. eScholarID:2h16

• 2005: Banach, R., Poppleton, M., Jeske, C. & Stepney, S (2005). Retrenchment and the Mondex Electronic Purse. Presented at Proceedings of the 12th International Workshop on Abstract State Machines, ASM 2005, March 8-11, 2005, Paris, France. eScholarID:2h18

• 2005: R. Banach, J-P. Bodeveix, M. Filali, M. Poppleton. (2005). Dynamic Aspects of Retrenchments through Temporal Logic. Presented at SEEWFM-05. Ohrid: South-East European Research Centre. eScholarID:38980

• 2005: Richard Banach. (2005). Retrenchment Tutorial. Presented at Seventh International Conference on Formal Methods and Software Engineering (ICFM 2005), 1-4 November 2006, Manchester, UK. Manchester: Springer Verlag. eScholarID:39038

• 2005: Banach, R. & Fraser, S (2005). Retrenchment and the B-Toolkit. Presented at ZB 2005: Formal Specification and Development in Z and B, 4th International Conference of B and Z Users, Guildford, UK, April 13-15, 2005, Proceedings. Springer. eScholarID:2h20 | DOI:10.1007/11415787_13

• 2004: Poppleton, M. & Banach, R (2004). Requirements Validation by Lifting Retrenchments in B. Presented at 9th International Conference on Engineering of Complex Computer Systems (ICECCS 2004), 14-16 April 2004, Florence, Italy. IEEE Computer Society. eScholarID:2h21

• 2002: Poppleton, M. & Banach, R (2002). Controlling Control Systems: An Application of Evolving Retrenchment. Presented at ZB 2002: Formal Specification and Development in Z and B, 2nd International Conference of B and Z Users, Grenoble, France, January 23-25, 2002, Proceedings. Springer. eScholarID:2h25

• 2002: Jeske, C. & Banach, R (2002). Minimally and Maximally Abstract Retrenchments. Presented at Integrated Formal Methods, Third International Conference, IFM 2002, Turku, Finland, May 15-18, 2002, Proceedings. Springer. eScholarID:2h24

• 2000: Banach, R (2000). Maximally Abstract Retrenchments. eScholarID:2h26

• 2000: Poppleton, M. & Banach, R (2000). Retrenchment: Extending Refinement for Continuous and Control Systems. Presented at 4th Irish Workshop on Formal Methods, IWFM 2000, Maynooth, Ireland, 5th-6th July 2000. BCS. eScholarID:2h28

• 2000: Banach, R. & Poppleton, M (2000). Fragmented Retrenchment, Concurrency and Fairness. eScholarID:2h27

• 2000: Banach, R. & Poppleton, M (2000). Retrenchment, Refinement, and Simulation. Presented at ZB 2000: Formal Specification and Development in Z and B, First International Conference of B and Z Users, York, UK, August 29 - September 2, 2000, Proceedings. Springer. eScholarID:2h29

• 1999: Poppleton, M. & Banach, R (1999). Retrenchment: Extending the Reach of Refinement. eScholarID:2h30

• 1999: Banach, R. & Poppleton, M (1999). Retrenchment. Presented at FM'99 - Formal Methods, World Congress on Formal Methods in the Development of Computing Systems, Toulouse, France, September 20-24, 1999, Proceedings, Volume II. Springer. eScholarID:2h32

• 1999: Banach, R. & Poppleton, M (1999). Retrenchment and Punctured Simulation. Presented at Integrated Formal Methods, Proceedings of the 1st International Conference on Integrated Formal Methods, IFM 99, York, UK, 28-29 June 1999. Springer. eScholarID:2h31

• 1998: Banach, R. & Poppleton, M (1998). Retrenchment: An Engineering Variation on Refinement. Presented at B'98: Recent Advances in the Development and Use of the B Method, Second International B Conference, Montpellier, France, April 22-24, 1998, Proceedings. Springer. eScholarID:2h33

• 1997: Banach, R. & Papadopoulos, G (1997). Implementing interaction nets in MONSTR. eScholarID:2h34

• 1995: Banach, R. & Papadopoulos, G (1995). Linear behaviour of term graph rewriting programs. eScholarID:2h35

• 1994: Banach, R (1994). The Contractum in Algebraic Graph Rewriting. Presented at Graph Gramars and Their Application to Computer Science, 5th International Workshop, Williamsburg, VA, USA, November 13-18, 1994, Selected Papers. Springer. eScholarID:2h36

• 1992: Banach, R (1992). Simple Type Inference for Term Graph Rewriting Systems. Presented at Conditional Term Rewriting Systems, Third International Workshop, CTRS-92, Pont-à-Mousson, France, July 8-10, 1992, Proceedings. Springer. eScholarID:2h37

• 1989: Banach, R (1989). Dataflow Analysis if Term Graph Rewriting Systems. Presented at PARLE '89: Parallel Architectures and Languages Europe, Volume II: Parallel Languages, Eindhoven, The Netherlands, June 12-16, 1989, Proceedings. Springer. eScholarID:2h38

• 1988: Watson, I., Woods, V., Watson, P., Banach, R., Greenberg, M. & Sargeant, J (1988). Flagship: A Parallel Architecture for Declarative Programming. eScholarID:2h1263

• 1988: Watson, I., Woods, V., Watson, P., Banach, R., Greenberg, M. & Sargeant, J (1988). Flagship: A Parallel Architecture for Declarative Programming. eScholarID:2h39

Richard Banach - Conference proceeding

• 2005: Lau, K. & Banach, R (2005). Formal Methods and Software Engineering, 7th International Conference on Formal Engineering Methods, ICFEM 2005, Manchester, UK, November 1-4, 2005, Proceedings. Presented at ICFEM. Springer. eScholarID:6h1

Howard Barringer - Journal article

• 2010: Barringer, H., Groce, A., Havelund, K. & Smith, M (2010). Formal Analysis of Log Files. Journal of Aerospace Computing, Information, and Communication, 7(11), 365-390. eScholarID:112840 | DOI:10.2514/1/49356

• 2010: Barringer, H., Rydeheard, D. & Havelund, K (2010). Rule Systems for Run-time Monitoring: from Eagle to RuleR. Journal of Logic and Computation, 20(3), 675-706. eScholarID:112781 | DOI:10.1093/logcom/exn076

• 2009: Barringer, H., Gabbay, D. & Rydeheard, D (2009). Modelling evolvable component systems: Part I: A logical framework. Logic Journal of the IGPL, 17(6), 631-696. eScholarID:112798 | DOI:10.1093/jigpal/jzp026

• 2008: Pasareanu, C., Giannakopoulou, D., Bobaru, M., Cobleigh, J. & Barringer, H (2008). Learning to divide and conquer: applying the L* algorithm to automate assume-guarantee reasoning. Form. Methods Syst. Des, 32(3), 175-205. eScholarID:1f158 | DOI:10.1007/s10703-008-0049-6

• 2006: BARRINGER H; INGGS C. (2006). CTL* model checking on a shared-memory architecture. Formal Methods in System Design, 29(2), eScholarID:1a9969 | DOI:10.1007/s10703-006-0008-z

• 2005: Artho, C., Barringer, H., Goldberg, A., Havelund, K., Khurshid, S., Lowry, M., Pasareanu, C., Rosu, G., Sen, K., Visser, W. & Washington, R (2005). Combining test case generation and runtime verification. Theor. Comput. Sci, 336(2-3), 209-234. eScholarID:1h42 | DOI:10.1016/j.tcs.2004.11.007

• 2005: BARRINGER H; GIANNAKOPOULOU D; PASAREANU C. (2005). Component Verification with Automatically Generated Assumptions. Automated Software Engineering, 12(3), eScholarID:1a9967 | DOI:10.1007/s10515-005-2641-y

• 2002: Barringer, H., Fellows, D., Gough, G. & Williams, A (2002). Rainbow: Development, Simulation and Analysis Tools for Asynchronous Micropipeline Hardware Design. Comput. J, 45(1), 2-11. eScholarID:1h281

• 2002: Inggs, C. & Barringer, H (2002). Effective State Exploration for Model Checking on a Shared Memory Architecture. Electr. Notes Theor. Comput. Sci, 68(4), eScholarID:1h44

• 2000: Visser, W. & Barringer, H (2000). Practical CTL* Model Checking: Should SPIN be Extended? STTT, 2(4), 350-365. eScholarID:1h45

• 1996: Barringer, H., Gough, G., Monahan, B. & Williams, A (1996). A Process Algebra Foundation for Reasoning about Core ELLA. Comput. J, 39(4), 303-324. eScholarID:1h282

• 1996: Barringer, H., Gough, G., Brough, D., Gabbay, D., Hodkinson, I., Hunter, A., Owens, R., McBrien, P., Reynolds, M. & Fisher, M (1996). Languages, Meta-languages and METATEM, A Discussion Paper. Logic Journal of the IGPL, 4(2), 255-272. eScholarID:1h283 | DOI:10.1093/jigpal/4.2.255

• 1995: Barringer, H., Fisher, M., Gabbay, D., Gough, G. & Owens, R (1995). METATEM: An Introduction. Formal Asp. Comput, 7(5), 533-549. eScholarID:1h284

• 1995: Barringer, H., Gough, G., Monahan, B. & Williams, A (1995). Symbolic Equivalence Checking for the ELLA Hardware Description Language. Journal of the Brazilian Computer Society, 2(2), 49-62. eScholarID:113359

• 1991: Barringer, H (1991). Editorial. Journal of Logic and Computation, 1(5), 573-574. eScholarID:1h49

• 1990: de Roever, W., Barringer, H., Courcoubetis, C., Gabbay, D., Gerth, R., Jonsson, B., Pnueli, A., Reed, M., Vytopil, J. & Wolper, P (1990). Formal Methods and Tools for the Development of Distributed and Real Time Systems: SPEC -- Esprit Project 3096 (Extended Abstract). Bulletin of the European Association of Theoretical Computer Science, (40), 117-133. eScholarID:113358

• 1989: Bjoerner, D., Hoare, C., Bowen, J., JiFeng, H., Langmaack, H., Olderog, E., Martin, U., Stavridou, V., Nielson, F., Barringer, H., Edwards, D., Lovengreen, H., Ravn, A. & Rischel, H (1989). A ProCos Project Description: Esprit BRA 3104. Bulletin of the European Association of Theoretical Computer Science, (39), 60-73. eScholarID:113357

• 1987: Barringer, H (1987). Up and Down The Temporal Wey. Comput. J, 30(2), 134-148. eScholarID:1h50

• 1986: Barringer, H. & Mearns, I (1986). A Proof System for Ada Tasks. Comput. J, 29(5), 404-415. eScholarID:1h51

• 1984: Barringer, H., Cheng, J. & Jones, C (1984). A Logic Covering Undefinedness in Program Proofs. Acta Inf, 21, 251-269. eScholarID:1h52

• 1979: Barringer, H., Capon, P. & Philips, R (1979). The Portable Compiling Systems of MUSS. Softw., Pract. Exper, 9(8), 645-655. eScholarID:1h53

Howard Barringer - Conference contribution

• 2011: Howard Barringer, Klaus Havelund. (2011). TraceContract: A Scala DSL for Trace Analysis. Presented at FM 2011. Limerick, Ireland: Springer. eScholarID:146982 | DOI:10.1007/978-3-642-21437-0_7

• 2010: Afifi, D., Rydeheard, D. & Barringer, H (2010). Automated Reasoning in the Simulation of Evolvable Systems. eScholarID:113744

• 2010: Afifi, D., Rydeheard, D. & Barringer, H (2010). ESAT: A Tool for Animating Logic-Based Specifications of Evolvable Component Systems. Springer. eScholarID:112782 | DOI:10.1007/978-3-642-16612-9_36

• 2010: Barringer, H. & Gabbay, D (2010). Modal and Temporal Argumentation Networks. eScholarID:112780 | DOI:10.1007/978-3-642-13754-9_1

• 2009: Barringer, H., Groce, A., Havelund, K. & Smith, M (2009). An Entry Point for Formal Methods: Specification and Analysis of Event Logs. eScholarID:112800 | DOI:10.4204/EPTCS.20.2

• 2009: Barringer, H., Havelund, K., Rydeheard, D. & Groce, A (2009). Rule Systems for Runtime Verification: A Short Tutorial. Springer. eScholarID:112797 | DOI:10.1007/978-3-642-04694-0_1

• 2009: Bujorianu, M. & Barringer, H (2009). An Integrated Specification Logic for Cyber-Physical Systems. IEEE Computer Society. eScholarID:112799 | DOI:10.1109/ICECCS.2009.36

• 2008: Baran, J. & Barringer, H (2008). Forays into Sequential Composition and Concatenation in EAGLE. Presented at 8th International Workshop on Runtime Verification. Budapest, HUNGARY: Springer-Verlag Berlin. eScholarID:2f82

• 2007: Barringer, H., Rydeheard, D. & Gabbay, D (2007). A Logical Framework for Monitoring and Evolving Software Components. Presented at First Joint IEEE/IFIP Symposium on Theoretical Aspects of Software Engineering, TASE 2007, June 5-8, 2007, Shanghai, China. Shanghai, China: IEEE Computer Society. eScholarID:2h44

• 2007: Barringer, H., Rydeheard, D. & Havelund, K (2007). Rule systems for run-time monitoring: From EAGLE to RULER. Presented at 7th International Workshop on Runtime Verification. Vancouver, CANADA: Springer-Verlag Berlin. eScholarID:2f185

• 2007: Baran, J. & Barringer, H (2007). A grammatical representation of visibly pushdown languages. Presented at 14th International Workshop on Logic, Language, Information and Computation. Rio de Janeiro, BRAZIL: Springer-Verlag Berlin. eScholarID:2f188

• 2007: Yang, N., Barringer, H. & Zhang, N (2007). A Purpose-Based Access Control Model. Presented at Proceedings of the Third International Symposium on Information Assurance and Security, IAS 2007, August 29-31, 2007, Manchester, United Kingdom. IEEE Computer Society. eScholarID:2h41

• 2007: Barringer, H., Gabbay, D. & Rydeheard, D (2007). From runtime verification to evolvable systems. Presented at 7th International Workshop on Runtime Verification. Vancouver, CANADA: Springer-Verlag Berlin. eScholarID:2f187

• 2007: Barringer, H., Rydeheard, D., Warboys, B. & Gabbay, D (2007). A revision-based logical framework for evolvable software. Presented at International Conference on Software Engineering. Innsbruck, AUSTRIA: Acta Press Anaheim. eScholarID:2f184

• 2005: Cornelia P. Inggs, Howard Barringer. (2005). CTL* Model Checking on a Shared-Memory Architecture. Presented at 3rd International Workshop on Parallel and Distributed Methods in Verification (PDMC 2004). London: Springer. eScholarID:65503

• 2004: Barringer, H., Goldberg, A., Havelund, K. & Sen, K (2004). Rule-Based Runtime Verification. Springer. eScholarID:112884

• 2004: Barringer, H., Goldberg, A., Havelund, K. & Sen, K (2004). Program Monitoring with LTL in EAGLE. Presented at 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), CD-ROM / Abstracts Proceedings, 26-30 April 2004, Santa Fe, New Mexico, USA. IEEE Computer Society. eScholarID:2h48

• 2004: Inggs, C., Barringer, H., Nenadic, A. & Zhang, N (2004). Model Checking a Security Protocol. eScholarID:112893

• 2003: Barringer, H., Giannakopolou, D. & Pasareanu, C (2003). Proof Rules for Automated Compositional Verification through Learning. eScholarID:112894

• 2002: Inggs, C. & Barringer, H (2002). On the Parallelisation of Model Checking. University of Birmingham, School of Computer Science, Technical Report CSR-02-6. eScholarID:112996

• 2002: Giannakopoulou, D., Pasareanu, C. & Barringer, H (2002). Assumption Generation for Software Component Verification. Presented at 17th IEEE International Conference on Automated Software Engineering (ASE 2002), 23-27 September 2002, Edinburgh, Scotland, UK. IEEE Computer Society. eScholarID:2h50

• 1998: Visser, W. & Barringer, H (1998). CTL* Model Checking for SPIN. Ecole Nationale Superieure des Telecommunications - ENST 98 S 002. eScholarID:112998

• 1997: Visser, W., Barringer, H., Fellows, D., Gough, G. & Williams, A (1997). Efficient CTL* model checking for analysis of rainbow designs. Presented at Advances in Hardware Design and Verification, IFIP WG 10.5 International Conference on Correct Hardware Design and Verification Methods, 16-18 October 1997, Montréal, Québec, Canada. Chapman & Hall. eScholarID:2h51

• 1997: Barringer, H., Fellows, D., Gough, G., Jinks, P. & Williams, A (1997). Multi-view design of Asynchronous Micropipeline Systems using Rainbow. Chapman and Hall. eScholarID:112953

• 1997: Barringer, H., Fellows, D., Gough, G. & Williams, A (1997). Abstract Modelling of Asynchronous Micropipeline Systems using Rainbow. Chapman and Hall. eScholarID:112954

• 1997: Willem Visser, Howard Barringer. (1997). Memory efficient state storage in SPIN. Presented at Proceedings of the 2nd Workshop on the SPIN Verification System. American Mathematical Society. eScholarID:112983

• 1997: de Melo, A. & Barringer, H (1997). Minimization of Synchronous Processes Preserving Bisimulation. eScholarID:112951

• 1996: Barringer, H., Fellows, D., Graham, G., Jinks, P., Marsden, B. & Williams, A (1996). Design and Simulation in Rainbow: A framework for Asynchronous Micropipeline Circuits. Society for Computer Simulation International. eScholarID:112997

• 1995: Barringer, H., Gough, G., Monahan, B. & Williams, A (1995). Formal support for the ELLA hardwar description language. Presented at Correct Hardware Design and Verification Methods, IFIP WG 10.5 Advanced Research Working Conference, CHARME '95, Frankfurt/Main, Germany, October 2-4, 1995, Proceedings. Springer. eScholarID:2h53

• 1995: Barringer, H., Gough, G., Monahan, B. & Williams, A (1995). Formal support for the ELLA hardwar description language. Presented at Correct Hardware Design and Verification Methods, IFIP WG 10.5 Advanced Research Working Conference, CHARME '95, Frankfurt/Main, Germany, October 2-4, 1995, Proceedings. Springer. eScholarID:2h576

• 1995: Melo, A. & Barringer, H (1995). A foundation for formal reuse of hardware. Presented at Correct Hardware Design and Verification Methods, IFIP WG 10.5 Advanced Research Working Conference, CHARME '95, Frankfurt/Main, Germany, October 2-4, 1995, Proceedings. Springer. eScholarID:2h52

• 1995: Barringer, H., Gough, G., Monahan, B. & Williams, A (1995). Symbolic Verification of hardware systems. eScholarID:113012

• 1995: Barringer, H., Gough, G., Monahan, B. & Williams, A (1995). A Design and Verification Environment for ELLA. eScholarID:113011

• 1994: Dixon, C., Fisher, M. & Barringer, H (1994). A Graph-Based Approach to Resolution in Temporal Logic. Presented at Temporal Logic, First International Conference, ICTL '94, Bonn, Germany, July 11-14, 1994, Proceedings. Springer. eScholarID:2h54

• 1993: Barringer, H., Gough, G., Longshaw, T., Monahan, B., Peim, M. & Williams, A (1993). Formal Verification Support for ELLA. eScholarID:113072

• 1992: Howard Barringer, Graham Gough, Brian Monahan. (1992). Operational Semantics for Hardware Design Languages. Presented at Advanced Research Workshop on Correct Hardware Design Methodologies. Turin: North Holland. eScholarID:113758

• 1991: Barringer, H. & Gabbay, D (1991). The Imperative Future: Past Successes => Future Actions. Springer-Verlag. eScholarID:113565

• 1991: Edward Babb, Howard Barringer, Dov Gabbay. (1991). A Meta-level Rewrite Language for Non-linear Planning. Presented at European Workshop on Planning, EWSP-91. GMD, Sankt Augustin. eScholarID:114062

• 1991: Barringer, H. & Fisher, M (1991). Concurrent MetateM Processes - A Language for Distributed AI. Society for Computer Simulation (SCS). eScholarID:114088

• 1991: Barringer, H., Fisher, M., Gabbay, D. & Hunter, A (1991). Meta-Reasoning in Executable Temporal Logic. eScholarID:2h55

• 1989: Barringer, H., Fisher, M., Gabbay, D., Gough, G. & Owens, R (1989). METATEM: A Framework for Programming in Temporal Logic. Presented at Stepwise Refinement of Distributed Systems, Models, Formalisms, Correctness, REX Workshop, Mook, The Netherlands, May 29 - June 2, 1989, Proceedings. Springer. eScholarID:2h57

• 1989: Barringer, H., Fisher, M. & Gough, G (1989). Fair SMG and Linear Time Model Checking. Presented at Automatic Verification Methods for Finite State Systems, International Workshop, Grenoble, France, June 12-14, 1989, Proceedings. Springer. eScholarID:2h56 | DOI:10.1007/3-540-52148-8_12

• 1988: Gough, G. & Barringer, H (1988). A Semantics Driven Temporal Verification System. Presented at ESOP '88, 2nd European Symposium on Programming, Nancy, France, March 21-24, 1988, Proceedings. Springer. eScholarID:2h579 | DOI:10.1007/3-540-19027-9_2

• 1988: Stavridou, V., Barringer, H. & Edwards, D (1988). Formal Specification and Verification of Hardware: A Comparative Case Study. eScholarID:2h59

• 1988: Barringer, H. & Gabbay, D (1988). Executing Temporal Logic: Review and Prospects (Abstract). Presented at Concurrency 88: International Conference on Concurrency, Hamburg, FRG, October 18-19, 1988, Proceedings. Springer. eScholarID:2h58

• 1987: Banieqbal, B. & Barringer, H (1987). Temporal Logic with Fixed Points. Presented at Temporal Logic in Specification, Altrincham, UK, April 8-10, 1987, Proceedings. Springer. eScholarID:2h61

• 1986: Barringer, H., Kuiper, R. & Pnueli, A (1986). A Really Abstract Concurrent Model and its Temporal Logic. eScholarID:2h62

• 1985: Barringer, H., Kuiper, R. & Pnueli, A (1985). A Compositional Approach to a CSP-like Language. North Holland. eScholarID:113322

• 1985: Barringer, H (1985). Specifying Ada Tasks. eScholarID:113321

• 1984: Barringer, H (1984). Formal Specification Techniques for Parallel and Distributed Systems: A Survey. Cambridge University Press. eScholarID:113148

• 1984: Barringer, H. & Kuiper, R (1984). Hierarchical Development of Cncurrent Systems in a Temporal Logic Framework. Presented at Seminar on Concurrency, Carnegie-Mellon University, Pittsburg, PA, USA, July 9-11, 1984. Springer. eScholarID:2h64

• 1984: Barringer, H., Kuiper, R. & Pnueli, A (1984). Now You May Compose Temporal Logic Specifications. Presented at Proceedings of the Sixteenth Annual ACM Symposium on Theory of Computing, 1984, Washington, D.C., USA. ACM. eScholarID:2h63

• 1983: Barringer, H. & Kuiper, R (1983). Towards the Hierarchical, Temporal Logic, Specification. Presented at The Analysis of Concurrent Systems, Cambridge, September 12-16, 1983, Proceedings. Springer. eScholarID:2h65

• 1977: Barringer, H. & Lindsey, C (1977). The Manchester ALGOL 68 Compiler - Part 1. INRIA. eScholarID:113152

Howard Barringer - Conference proceeding

• 2010: Barringer, H., Falcone, Y., Finkbeiner, B., Havelund, K., Lee, I., Pace, G., Rosu, G., Sokolsky, O. & Tillmann, N (2010). Runtime Verification - First International Conference, RV 2010, St. Julians, Malta, November 1-4, 2010. Proceedings. Presented at RV. Springer. eScholarID:112755

• 1989: Banieqbal, B., Barringer, H. & Pnueli, A (1989). Temporal Logic in Specification, Altrincham, UK, April 8-10, 1987, Proceedings. Presented at Temporal Logic in Specification. Springer. eScholarID:6h4

Howard Barringer - Book

• 1999: Barringer, Howard, Michael Fisher, Dov Gabbay, and Graham Gough. (Ed.) (1999). Advances in Temporal Logic. Kluwer academic Publishers. eScholarID:113560

• 1985: Barringer, Howard. (1985). A Survey of Verification Techniques for Parallel Programs. (191). Springer. eScholarID:4h1

Howard Barringer - Book contribution

• 2005: H. Barringer, D. Gabbay and J. Woods. (2005). Temporal Dynamics of Support and Attack Networks: From Argumentation to Zoology. Mechanizing Mathematical Reasoning, Essays in Honor of Jörg H. Siekmann on the Occasion of His 60th Birthday. ( 2605, ). eScholarID:3a69

• 2005: H. Barringer, D.M. Gabbay. (2005). Modal Varieties of Temporal Logic. In M.D. Fisher, D.M. Gabbay, L. Vila (Ed.), Handbook of Temporal Reasoning in Artificial Intelligence. (pp. 119-165). The Netherlands: Elsevier. eScholarID:29933

• 1987: Barringer, H (1987). Temporal Logic and its Applications. (pp. 53-97). Academic Press Inc. (London) Limited. eScholarID:113564

Sean Bechhofer - Journal article

• 2011: Bechhofer, S., Buchan, I., Roure, D., Missier, P., Ainsworth, J., Bhagat, J., Couch, P., Cruickshank, D., Delderfield, M., Dunlop, I., Gamble, M., Michaelides, D., Owen, S., Newman, D., Sufi, S. & Goble, C (2011). Why linked data is not enough for scientists. Future Generation Computer Systems, (0), eScholarID:131684 | DOI:10.1016/j.future.2011.08.004

• 2011: Horridge, M. & Bechhofer, S (2011). The OWL API: A Java API for OWL ontologies. Semantic Web, 2(1), 11-21. eScholarID:124557 | DOI:10.3233/SW-2011-0025

• 2011: Lunn, D., Harper, S. & Bechhofer, S (2011). Identifying Behavioral Strategies of Visually Impaired Users to Improve Access to Web Content. ACM Transactions on Accessible Computing (TACCESS), 3(4), 13. eScholarID:124556 | DOI:10.1145/1952388.1952390

• 2010: Goble, C., Bhagat, J., Aleksejevs, S., Cruickshank, D., Michaelides, D., Newman, D., Borkum, M., Bechhofer, S., Roos, M., Li, P. & De Roure, D (2010). myExperiment: a repository and social network for the sharing of bioinformatics workflows. Nucleic Acids Research, 38(suppl 2), W677-W682. eScholarID:99458 | DOI:10.1093/nar/gkq429

• 2010: De Roure, D., Goble, C., Aleksejevs, S., Bechhofer, S., Bhagat, J., Cruickshank, D., Fisher, P., Hull, D., Michaelides, D., Newman, D., Procter, R., Lin, Y. & Poschen, M (2010). Towards Open Science: The myExperiment approach. Concurrency and Computation: Practice and Experience, 27(17), 2335-2353. eScholarID:99462 | DOI:10.1002/cpe.1601

• 2010: Birkin, M., Procter, R., Allan, R., Bechhofer, S., Buchan, I., Goble, C., Hudson-Smith, A., Lambert, P., De Roure, D. & Sinnott, R (2010). Elements of a computational infrastructure for social simulation. Philosophical Transactions of the Royal Society A, 368(1925), 3797-3812. eScholarID:99456 | DOI:10.1098/rsta.2010.0145

• 2008: Bechhofer, S., Yesilada, Y., Stevens, R., Jupp, S. & Horan, B (2008). Using Ontologies and Vocabularies for Dynamic Linking. IEEE Internet Computing, 12(3), 32-39. eScholarID:1h54 | DOI:10.1109/MIC.2008.68

• 2007: Aranguren, M., Bechhofer, S., Lord, P., Sattler, U. & Stevens, R (2007). Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL. BMC Bioinformatics, 8, 13. eScholarID:1f772 | DOI:10.1186/1471-2105-8-57

• 2007: Harper, S. & Bechhofer, S (2007). SADIe: Structural semantics for accessibility and device independence. ACM Trans. Comput.-Hum. Interact, 14(2), 27. eScholarID:1f685 | DOI:10.1145/1275511.1275516

• 2006: BECHHOFER S; MISSIER P; CORCHO O; GOBLE C; . (2006). An Overview of S-OGSA: a Reference Semantic Grid Architecture. Web Semantics: Science, Services and Agents on the World Wide Web, 4(2), 102-115. eScholarID:1a10234 | DOI:10.1016/j.websem.2006.03.001

• 2005: Horrocks, I., Patel-Schneider, P., Bechhofer, S. & Tsarkov, D (2005). OWL rules: A proposal and prototype implementation. J. Web Sem, 3(1), 23-40. eScholarID:1h60 | DOI:10.1016/j.websem.2005.05.003

• 2005: BECHHOFER SK; STEVENS R; LORD P. (2005). GOHSE: Ontology driven linking of biology resources. Web Semantics: Science, Services and Agents on the World Wide Web, 4(3), 155-163. eScholarID:1a10236 | DOI:10.1016/j.websem.2005.09.003

• 2005: Harper, S. & Bechhofer, S (2005). Semantic triage for increased Web accessibility. IBM Systems Journal, 44(3), 637-649. eScholarID:1h301

• 2005: Goble, C. & Bechhofer, S (2005). OntoGrid: A Semantic Grid Reference Architecture. CTWatch Quarterly, 1(4), eScholarID:12966

• 2005: Goble, C., Stevens, R. & Bechhofer, S (2005). The Semantic Web and Knowledge Grids. Drug Discovery Today: Technologies, 2(3), eScholarID:12967

• 2002: Stevens, R., Goble, C., Horrocks, I. & Bechhofer, S (2002). Building a bioinformatics ontology using OIL. IEEE Transactions on Information Technology in Biomedicine, 6(2), 135-141. eScholarID:1h263

• 2002: Stevens, R., Goble, C., Horrocks, I. & Bechhofer, S (2002). OILing the way to machine understandable bioinformatics resources. IEEE Transactions on Information Technology in Biomedicine, 6(2), 129-134. eScholarID:1h262

• 2002: Stevens, R., Goble, C., Horrocks, I. & Bechhofer, S (2002). OILing the way to machine understandable bioinformatics resources. IEEE Transactions on Information Technology in Biomedicine, 6(2), 129-134. eScholarID:1h61

• 2001: BECHHOFER SK; GOBLE C. (2001). Thesaurus Construction through Knowledge Representation. Data & Knowledge Engineering, 37(1), 25-45. eScholarID:1a10235 | DOI:10.1016/S0169-023X(00)00052-5

• 2001: Goble, C., Stevens, R., Ng, G., Bechhofer, S., Paton, N., Baker, P., Peim, M. & Brass, A (2001). Transparent access to multiple bioinformatics information sources. IBM Systems Journal, 40(2), 532-551. eScholarID:1h437

• 2001: Goble, C., Stevens, R., Ng, G., Bechhofer, S., Paton, N., Baker, P., Peim, M. & Brass, A (2001). Transparent access to multiple bioinformatics information sources. IBM Systems Journal, 40(2), 532-551. eScholarID:1h269

• 2000: Stevens, R., Goble, C. & Bechhofer, S (2000). Ontology-based Knowledge Representation for Bioinformatics. Briefings in Bioinformatics, 1(4), 398-414. eScholarID:1h275

• 2000: Paton, N., Goble, C. & Bechhofer, S (2000). Knowledge based information integration systems. Information & Software Technology, 42(5), 299-312. eScholarID:1h276

• 2000: Paton, N., Goble, C. & Bechhofer, S (2000). Knowledge based information integration systems. Information & Software Technology, 42(5), 299-312. eScholarID:1h67

• 2000: Stevens, R., Baker, P., Bechhofer, S., Ng, G., Jacoby, A., Paton, N., Goble, C. & Brass, A (2000). TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. Bioinformatics, 16(2), 184-186. eScholarID:1h439

• 2000: Stevens, R., Goble, C. & Bechhofer, S (2000). Ontology-based Knowledge Representation for Bioinformatics. Briefings in Bioinformatics, 1(4), 398-414. eScholarID:1h66

• 1999: Baker, P., Goble, C., Bechhofer, S., Paton, N., Stevens, R. & Brass, A (1999). An ontology for bioinformatics applications. Bioinformatics, 15(6), 510-520. eScholarID:1h445

• 1999: Baker, P., Goble, C., Bechhofer, S., Paton, N., Stevens, R. & Brass, A (1999). An ontology for bioinformatics applications. Bioinformatics, 15(6), 510-520. eScholarID:1h278

• 1997: Rector, A., Bechhofer, S., Goble, C., Horrocks, I., Nowlan, W. & Solomon, W (1997). The GRAIL concept modelling language for medical terminology. Artificial Intelligence in Medicine, 9(2), 139-171. eScholarID:1h280

• 1997: Rector, A., Bechhofer, S., Goble, C., Horrocks, I., Nowlan, W. & Solomon, W (1997). The GRAIL concept modelling language for medical terminology. Artificial Intelligence in Medicine, 9(2), 139-171. eScholarID:1h69

Sean Bechhofer - Conference contribution

• 2011: Sean Bechhofer. (2011). Research Objects: Towards Exchange and Reuse of Digital Objects. Presented at CERN Workshop on Innovations in Scholarly Communication (OAI7). Geneva, Switzerland. eScholarID:136698

• 2011: Roure, D., Bechhofer, S., Goble, C. & Newman, D (2011). Scientific Social Objects. eScholarID:131686

• 2010: Sean Bechhofer. (2010). SKOS: Past, Present and Future. Presented at Extended Semantic Web Conference. Heraklion, Greece. eScholarID:136695

• 2010: Bechhofer, S., Ainsworth, J., Bhagat, J., Buchan, I., Couch, P., Cruickshank, D., De Roure, D., Delderfield, M., Dunlop, I., Gamble, M., Goble, C., Michaelides, D., Missier, P., Owen, S., Newman, D. & Sufi, S (2010). Why Linked Data is Not Enough for Scientists. Presented at IEEE International Conference on eScience. IEEE Computer Society. eScholarID:99463 | DOI:http://doi.ieeecomputersociety.org/10.1109/eScience.2010.21

• 2010: De Roure, D., Goble, C., Aleksejevs, S., Bechhofer, S., Bhagat, J., Cruickshank, D., Fisher, P., Kollara, N., Michaelides, D., Missier, P., Newman, D., Ramsden, M., Roos, M., Wolstencroft, K., Zaluska, E. & Zhao, J (2010). The Evolution of myExperiment. Los Alamitos, CA, USA: IEEE Computer Society. eScholarID:109564 | DOI:http://doi.ieeecomputersociety.org/10.1109/eScience.2010.59

• 2010: Missier, P., Wolstencroft, K., Tanoh, F., Li, P., Bechhofer, S., Belhajjame, K., Pettifer, S. & Goble, C (2010). Functional Units: Abstractions for Web Service Annotations. IEEE Computer Society. eScholarID:99461 | DOI:10.1109/SERVICES.2010.21

• 2010: Singh, R., Bechhofer, S., Belhajjame, K. & Embury, S (2010). Automatically Identifying Bounds on Semantic Annotations for Bioinformatics Web Service Input Parameters. Springer. eScholarID:99460 | DOI:10.1007/978-3-642-16985-4_21

• 2010: Bechhofer, S., De Roure, D., Gamble, M., Goble, C. & Buchan, I (2010). Research Objects: Towards Exchange and Reuse of Digital Knowledge. eScholarID:99457 | DOI:10.1038/npre.2010.4626.1

• 2010: Roos, M., Bechhofer, S., Zhao, J., Missier, P., Newman, D., Roure, D. & Marshall, M (2010). A Linked Data Approach to Sharing Workflows and Workflow Results. Springer. eScholarID:99459 | DOI:10.1007/978-3-642-16558-0_29

• 2009: Buchan, I., Sufi, S., Thew, S., Dunlop, I., Hiroeh, U., Canoy, D., Moulton, G., Ainsworth, J., Dale, A., Bechhofer, S. & Goble, C (2009). Obesity e-Lab: Connecting Social Science via Research Objects. eScholarID:99448

• 2009: Newman, D., Bechhofer, S. & De Roure, D (2009). myExperiment: An ontology for e-Research. eScholarID:99446

• 2009: Horridge, M. & Bechhofer, S (2009). The OWL API: A Java API for Working with OWL 2 Ontologies. eScholarID:99455

• 2009: Jupp, S., Bechhofer, S. & Stevens, R (2009). A Flexible API and Editor for SKOS. Presented at The Semantic Web: Research and Applications, 6th European Semantic Web Conference, ESWC 2009, Heraklion, Crete, Greece, May 31-June 4, 2009, Proceedings. Springer. eScholarID:2h66 | DOI:10.1007/978-3-642-02121-3_38

• 2009: De Roure, D., Goble, C., Aleksejevs, S., Bechhofer, S., Bhagat, J., Cruickshank, D., Michaelides, D. & Newman, D (2009). The myExperiment Open Repository for Scientific Workflows. eScholarID:99454

• 2009: Lunn, D., Harper, S. & Bechhofer, S (2009). Combining SADIe and AxsJAX to improve the accessibility of web content. Presented at Proceedings of the International Cross-Disciplinary Conference on Web Accessibility, W4A 2009, Madrid, Spain, April 20-21, 2009. ACM. eScholarID:2h618

• 2008: Lunn, D., Bechhofer, S. & Harper, S (2008). The SADIe transcoding platform. Presented at Proceedings of the International Cross-Disciplinary Conference on Web Accessibility, W4A 2008, Beijing, China, April 21-22, 2008. ACM. eScholarID:2h622

• 2008: Lunn, D., Bechhofer, S. & Harper, S (2008). A user evaluation of the SADIe transcoder. Presented at Proceedings of the 10th International ACM SIGACCESS Conference on Computers and Accessibility, ASSETS 2008, Halifax, Nova Scotia, Canada, October 13-15, 2008. ACM. eScholarID:2h620

• 2008: Michailidou, E., Harper, S. & Bechhofer, S (2008). Investigating sighted users' browsing behaviour to assist web accessibility. Presented at Proceedings of the 10th International ACM SIGACCESS Conference on Computers and Accessibility, ASSETS 2008, Halifax, Nova Scotia, Canada, October 13-15, 2008. ACM. eScholarID:2h619

• 2008: Jupp, S., Stevens, R., Bechhofer, S., Yesilada, Y. & Kostkova, P (2008). Knowledge Representation for Web Navigation. Presented at Semantic Web Applications and Tools for the Life Sciences (SWAT4LS 2008). eScholarID:13021

• 2008: Liebig, T., Luther, M., Noppens, O., Rodriguez, M., Calvanese, D., Wessel, M., Horridge, M., Bechhofer, S., Tsarkov, D. & Sirin, E (2008). OWLlink: DIG for OWL 2. Presented at Proceedings of the Fifth OWLED Workshop on OWL: Experiences and Directions, collocated with the 7th International Semantic Web Conference (ISWC-2008), Karlsruhe, Germany, October 26-27, 2008. CEUR-WS.org. eScholarID:2h71

• 2008: Jupp, S., Bechhofer, S. & Stevens, R (2008). SKOS with OWL: Don't be Full-ish!. Presented at Proceedings of the Fifth OWLED Workshop on OWL: Experiences and Directions, collocated with the 7th International Semantic Web Conference (ISWC-2008), Karlsruhe, Germany, October 26-27, 2008. CEUR-WS.org. eScholarID:2h72

• 2008: Jupp, S., Bechhofer, S. & Stevens, R (2008). A Flexible API and Editor for SKOS. Presented at Proceedings of the Poster and Demonstration Session at the 7th International Semantic Web Conference (ISWC2008), Karlsruhe, Germany, October 28, 2008. CEUR-WS.org. eScholarID:2h70

• 2008: Michailidou, E., Harper, S. & Bechhofer, S (2008). Visual Complexity and Aesthetic Perception of Web pages. Presented at 26th ACM International Conference on Design of Communication. Lisbon, PORTUGAL: Assoc Computing Machinery. eScholarID:2f38

• 2008: Lunn, D., Bechhofer, S. & Harper, S (2008). Experiences of Exposing Semantics to Drive Transcoding. Presented at 1st International Workshop on Ontologies in Interactive Systems. Liverpool, ENGLAND: Ieee Computer Soc. eScholarID:2f44

• 2007: Jupp, S., Stevens, R., Bechhofer, S., Kostkova, P. & Yesilada, Y (2007). Document navigation: Ontology or Knowledge Organisation System?. Presented at NETTAB2007: A Semantic Web for Bioinformatics: Goals, Tools, Systems, Applications. eScholarID:13020

• 2007: Horridge, M., Bechhofer, S. & Noppens, O (2007). Igniting the OWL 1.1 Touch Paper: The OWL API. Presented at Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, Innsbruck, Austria, June 6-7, 2007. CEUR-WS.org. eScholarID:2h77

• 2007: Corcho, Ó., Alper, P., Missier, P., Bechhofer, S. & Goble, C (2007). Grid metadata management: Requirements and architecture. Presented at 8th IEEE/ACM International Conference on Grid Computing (GRID 2007), September 19-21, 2007, Austin, Texas, USA, Proceedings. IEEE. eScholarID:2h459 | DOI:10.1109/GRID.2007.4354121

• 2007: Jupp, S., Bechhofer, S., Kostkova, P., Steven, R. & Yesilada, Y (2007). Converting Ontologies to Knowledge Organisation Systems for Document Navigation. Presented at Bio-Ontologies SIG Workshop 2007, ISMB. eScholarID:13019

• 2007: Corcho, O., Alper, P., Missier, P., Bechhofer, S., Goble, C. & Xing, W (2007). Metadata management in S-OGSA. Presented at 7th International Conference on Computational Science (ICCS 2007). Beijing, PEOPLES R CHINA: Springer-Verlag Berlin. eScholarID:2f171

• 2007: Corcho, O., Alper, P., Missier, P., Bechhofer, S., Goble, C. & Ieee, I (2007). Grid metadata management: requirements and architecture. Presented at 8th IEEE/ACM International Conference on Grid Computing. Austin, TX: Ieee. eScholarID:2f172

• 2006: Bechhofer, S., Harper, S. & Lunn, D (2006). SADIe: Semantic Annotation for Accessibility. Presented at The Semantic Web - ISWC 2006, 5th International Semantic Web Conference, ISWC 2006, Athens, GA, USA, November 5-9, 2006, Proceedings. Springer. eScholarID:2h627 | DOI:10.1007/11926078_8

• 2006: Harper, S., Bechhofer, S. & Lunn, D (2006). SADIe: : transcoding based on CSS. Presented at Proceedings of the 8th International ACM SIGACCESS Conference on Computers and Accessibility, ASSETS 2006, Portland, Oregon, USA, October 23-25, 2006. ACM. eScholarID:2h626

• 2006: Harper, S., Bechhofer, S. & Lunn, D (2006). Taming the inaccessible web. Presented at Proceedings of the 24th Annual International Conference on Design of Communication, SIGDOC 2006, Myrtle Beach, SC, USA, October 18-20, 2006. ACM. eScholarID:2h628

• 2006: Bechhofer, S., Liebig, T., Luther, M., Noppens, O., Patel-Schneider, P., Suntisrivaraporn, B., Turhan, A. & Weithöner, T (2006). DIG 2.0 -- Towards a Flexible Interface for Description Logic Reasoners. Presented at Proceedings of the OWLED*06 Workshop on OWL: Experiences and Directions, Athens, Georgia, USA, November 10-11, 2006. CEUR-WS.org. eScholarID:2h81

• 2006: Bechhofer, S., Yesilada, Y., Horan, B. & Goble, C (2006). Knowledge-Driven Hyperlinks: Linking in the Wild. Presented at Adaptive Hypermedia and Adaptive Web-Based Systems, 4th International Conference, AH 2006, Dublin, Ireland, June 21-23, 2006, Proceedings. Springer. eScholarID:2h78 | DOI:10.1007/11768012_1

• 2006: Bechhofer, S., Yesilada, Y., Horan, B. & Goble, C (2006). Knowledge-Driven Hyperlinks: Linking in the Wild. Presented at Adaptive Hypermedia and Adaptive Web-Based Systems, 4th International Conference, AH 2006, Dublin, Ireland, June 21-23, 2006, Proceedings. Springer. eScholarID:2h466 | DOI:10.1007/11768012_1

• 2006: Yesilada, Y., Bechhofer, S. & Horan, B (2006). Personalised Dynamic Links on the Web. Presented at SMAP2006: 1st International Workshop on Semantic Media Adaptation and Personalization. eScholarID:13023 | DOI:10.1109/SMAP.2006.26

• 2005: Bechhofer, S., Horrocks, I. & Turi, D (2005). The OWL Instance Store: System Description. Presented at Automated Deduction - CADE-20, 20th International Conference on Automated Deduction, Tallinn, Estonia, July 22-27, 2005, Proceedings. Springer. eScholarID:2h83 | DOI:10.1007/11532231_13

• 2005: Cregan, A., Mochol, M., Vrandecic, D. & Bechhofer, S (2005). Pushing the Limits of OWL, Rules and Protege. A Simple Example. Presented at Proceedings of the OWLED*05 Workshop on OWL: Experiences and Directions, Galway, Ireland, November 11-12, 2005. CEUR-WS.org. eScholarID:2h84

• 2005: Bechhofer, S., Stevens, R. & Lord, P (2005). Ontology Driven Dynamic Linking of Biology Resources. Presented at Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005. World Scientific. eScholarID:2h85

• 2005: Kotsiopoulos, I., Missier, P., Alper, P., Corcho, O., Bechhofer, S. & Goble, C (2005). Architectural patterns for the Semantic Grid. Presented at Workshop on Knowledge and Data Management in Grids. Poznan, POLAND: Springer. eScholarID:2f224

• 2004: Lord, P., Bechhofer, S., Wilkinson, M., Schiltz, G., Gessler, D., Hull, D., Goble, C. & Stein, L (2004). Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt. Presented at The Semantic Web - ISWC 2004: Third International Semantic Web Conference,Hiroshima, Japan, November 7-11, 2004. Proceedings. Springer. eScholarID:2h88

• 2004: Horrocks, I., Li, L., Turi, D. & Bechhofer, S (2004). The Instance Store: DL Reasoning with Large Numbers of Individuals. Presented at Proceedings of the 2004 International Workshop on Description Logics (DL2004), Whistler, British Columbia, Canada, June 6-8, 2004. CEUR-WS.org. eScholarID:2h86

• 2004: Bechhofer, S. & Volz, R (2004). Patching Syntax in OWL Ontologies. Presented at The Semantic Web - ISWC 2004: Third International Semantic Web Conference,Hiroshima, Japan, November 7-11, 2004. Proceedings. Springer. eScholarID:2h90

• 2004: Bechhofer, S. & Carroll, J (2004). Parsing owl dl: trees or triples?. Presented at Proceedings of the 13th international conference on World Wide Web, WWW 2004, New York, NY, USA, May 17-20, 2004. ACM. eScholarID:2h91

• 2004: Zhao, J., Goble, C., Stevens, R. & Bechhofer, S (2004). Semantically Linking and Browsing Provenance Logs for E-science. Presented at Semantics for Grid Databases, First International IFIP Conference on Semantics of a Networked World: ICSNW 2004, Paris, France, June 17-19, 2004. Revised Selected Papers. Springer. eScholarID:2h87

• 2004: Tsarkov, D., Riazanov, A., Bechhofer, S. & Horrocks, I (2004). Using Vampire to Reason with OWL. Presented at The Semantic Web - ISWC 2004: Third International Semantic Web Conference,Hiroshima, Japan, November 7-11, 2004. Proceedings. Springer. eScholarID:2h89

• 2004: Zhao, J., Goble, C., Stevens, R. & Bechhofer, S (2004). Semantically Linking and Browsing Provenance Logs for E-science. Presented at Semantics for Grid Databases, First International IFIP Conference on Semantics of a Networked World: ICSNW 2004, Paris, France, June 17-19, 2004. Revised Selected Papers. Springer. eScholarID:2h499

• 2004: Lord, P., Bechhofer, S., Wilkinson, M., Schiltz, G., Gessler, D., Hull, D., Goble, C. & Stein, L (2004). Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt. Presented at The Semantic Web - ISWC 2004: Third International Semantic Web Conference,Hiroshima, Japan, November 7-11, 2004. Proceedings. Springer. eScholarID:2h502

• 2003: Bechhofer, S., Möller, R. & Crowther, P (2003). The DIG Description Logic Interface. Presented at Proceedings of the 2003 International Workshop on Description Logics (DL2003), Rome, Italy September 5-7, 2003. CEUR-WS.org. eScholarID:2h92

• 2003: Uschold, M., Clark, P., Dickey, F., Fung, C., Smith, S., Uczekaj, S., Wilke, M., Bechhofer, S. & Horrocks, I (2003). A Semantic Infosphere. Presented at The Semantic Web - ISWC 2003, Second International Semantic Web Conference, Sanibel Island, FL, USA, October 20-23, 2003, Proceedings. Springer. eScholarID:2h94

• 2003: Bechhofer, S., Volz, R. & Lord, P (2003). Cooking the Semantic Web with the OWL API. Presented at The Semantic Web - ISWC 2003, Second International Semantic Web Conference, Sanibel Island, FL, USA, October 20-23, 2003, Proceedings. Springer. eScholarID:2h93

• 2002: Bechhofer, S., Carr, L., Goble, C., Kampa, S. & Miles-Board, T (2002). The Semantics of Semantic Annotation. Presented at On the Move to Meaningful Internet Systems, 2002 - DOA/CoopIS/ODBASE 2002 Confederated International Conferences DOA, CoopIS and ODBASE 2002 Irvine, California, USA, October 30 - November 1, 2002, Proceedings. Springer. eScholarID:2h95

• 2002: Bechhofer, S., Carr, L., Goble, C., Kampa, S. & Miles-Board, T (2002). The Semantics of Semantic Annotation. Presented at On the Move to Meaningful Internet Systems, 2002 - DOA/CoopIS/ODBASE 2002 Confederated International Conferences DOA, CoopIS and ODBASE 2002 Irvine, California, USA, October 30 - November 1, 2002, Proceedings. Springer. eScholarID:2h518

• 2001: Bechhofer, S., Horrocks, I., Goble, C. & Stevens, R (2001). OilEd: a Reason-able Ontology Editor for the Semantic Web. Presented at Working Notes of the 2001 International Description Logics Workshop (DL-2001), Stanford, CA, USA, August 1-3, 2001. CEUR-WS.org. eScholarID:2h529

• 2001: Bechhofer, S., Goble, C. & Horrocks, I (2001). DAML+OIL is not Enough. Presented at Proceedings of SWWS'01, The first Semantic Web Working Symposium, Stanford University, California, USA, July 30 - August 1, 2001. eScholarID:2h532

• 2001: Goble, C., Bechhofer, S., Carr, L., Roure, D. & Hall, W (2001). Conceptual Open Hypermedia = The Semantic Web?. eScholarID:2h533

• 2001: Bechhofer, S., Goble, C. & Horrocks, I (2001). DAML+OIL is not Enough. Presented at Proceedings of SWWS'01, The first Semantic Web Working Symposium, Stanford University, California, USA, July 30 - August 1, 2001. eScholarID:2h98

• 2001: Bechhofer, S., Horrocks, I., Goble, C. & Stevens, R (2001). OilEd: a Reason-able Ontology Editor for the Semantic Web. Presented at Working Notes of the 2001 International Description Logics Workshop (DL-2001), Stanford, CA, USA, August 1-3, 2001. CEUR-WS.org. eScholarID:2h96

• 2001: L. Carr, S. Bechhofer, C.A. Goble, W. Hall. (2001). Conceptual linking: ontology-based open hypermedia. eScholarID:2a98

• 2000: Bechhofer, S., Drummond, N. & Goble, C (2000). Supporting Public Browsing of an Art Gallery Collections Database. Presented at Database and Expert Systems Applications, 11th International Conference, DEXA 2000, London, UK, September 4-8, 2000, Proceedings. Springer. eScholarID:2h536

• 2000: Bechhofer, S., Drummond, N. & Goble, C (2000). Supporting Public Browsing of an Art Gallery Collections Database. Presented at Database and Expert Systems Applications, 11th International Conference, DEXA 2000, London, UK, September 4-8, 2000, Proceedings. Springer. eScholarID:2h101

• 2000: Bechhofer, S. & Horrocks, I (2000). Driving User Interfaces from FaCT. Presented at Proceedings of the 2000 International Workshop on Description Logics (DL2000), Aachen, Germany, August 17-19, 2000. CEUR-WS.org. eScholarID:2h102

• 1999: Bechhofer, S., Horrocks, I., Patel-Schneider, P. & Tessaris, S (1999). A Proposal for a Description Logic Interface. Presented at Proceedings of the 1999 International Workshop on Description Logics (DL'99), Linköping, Sweden, July 30 - August 1, 1999. CEUR-WS.org. eScholarID:2h104

• 1999: Bechhofer, S., Stevens, R., Ng, G., Jacoby, A. & Goble, C (1999). Guiding the User: An Ontology Driven Interface. eScholarID:2h546

• 1999: Bechhofer, S. & Goble, C (1999). Classification Based Navigation and Retrieval. Presented at Database Semantics - Semantic Issues in Multimedia Systems, IFIP TC2/WG2.6 Eighth Working Conference on Database Semantics (DS-8), Rotorua, New Zealand, January 4-8, 1999. Kluwer. eScholarID:2h542

• 1999: Paton, N., Stevens, R., Baker, P., Goble, C., Bechhofer, S. & Brass, A (1999). Query Processing in the TAMBIS Bioinformatics Source Integration System. eScholarID:2h965

• 1999: Bechhofer, S. & Goble, C (1999). Classification Based Navigation and Retrieval. Presented at Database Semantics - Semantic Issues in Multimedia Systems, IFIP TC2/WG2.6 Eighth Working Conference on Database Semantics (DS-8), Rotorua, New Zealand, January 4-8, 1999. Kluwer. eScholarID:2h103

• 1999: Stevens, R., Paton, N., Baker, P., Ng, G., Goble, C., Bechhofer, S. & Brass, A (1999). TAMBIS Online: A Bioinformatics Source Integration Tool. eScholarID:2h545

• 1999: Paton, N., Stevens, R., Baker, P., Goble, C., Bechhofer, S. & Brass, A (1999). Query Processing in the TAMBIS Bioinformatics Source Integration System. eScholarID:2h105

• 1999: Stevens, R., Paton, N., Baker, P., Ng, G., Goble, C., Bechhofer, S. & Brass, A (1999). TAMBIS Online: A Bioinformatics Source Integration Tool. eScholarID:2h106

• 1999: Paton, N., Stevens, R., Baker, P., Goble, C., Bechhofer, S. & Brass, A (1999). Query Processing in the TAMBIS Bioinformatics Source Integration System. eScholarID:2h544

• 1999: Bechhofer, S., Stevens, R., Ng, G., Jacoby, A. & Goble, C (1999). Guiding the User: An Ontology Driven Interface. eScholarID:2h107

• 1998: Baker, P., Brass, A., Bechhofer, S., Goble, C., Paton, N. & Stevens, R (1998). TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. Presented at Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28 - July 1, 1998. AAAI. eScholarID:2h108

• 1997: Bechhofer, S. & Goble, C (1997). Using a DL to Drive Query Interfaces. Presented at Proceedings of the 1997 International Workshop on Description Logics, Université Paris-Sud, Centre d'Orsay, Laboratoire de Recherche en Informatique LRI. eScholarID:2h109

• 1997: Bechhofer, S. & Goble, C (1997). Using a DL to Drive Query Interfaces. Presented at Proceedings of the 1997 International Workshop on Description Logics, Université Paris-Sud, Centre d'Orsay, Laboratoire de Recherche en Informatique LRI. eScholarID:2h556

• 1996: Goble, C., Haul, C. & Bechhofer, S (1996). Describing and Classifying Multimedia Using the Description Logic GRAIL. eScholarID:2h110

Sean Bechhofer - Conference proceeding

• 2008: Bechhofer, S., Hauswirth, M., Hoffmann, J. & Koubarakis, M (2008). The Semantic Web: Research and Applications, 5th European Semantic Web Conference, ESWC 2008, Tenerife, Canary Islands, Spain, June 1-5, 2008, Proceedings. Presented at ESWC. Springer. eScholarID:6h5

Sean Bechhofer - Book contribution

• 2009: Bechhofer, S. & Paton, N (2009). Ontology Visual Querying. In Özsu, M. & Liu, L. (Ed.), {Encyclopedia of Database Systems}. Springer. eScholarID:99449

• 2009: Bechhofer, S (2009). OWL: Web Ontology Language. In Özsu, M. & Liu, L. (Ed.), {Encyclopedia of Database Systems}. Springer. eScholarID:99451

• 2008: Horrocks, I. & Bechhofer, S (2008). Semantic Web. In Harper, S. & Yesilada, Y. (Ed.), Web Accessibility: A Foundation for Research. (pp. -). Springer. eScholarID:12968 | DOI:10.1007/978-1-84800-050-6_19

• 2008: Yesilada, Y., Bechhofer, S. & Horan, B (2008). Dynamic Linking of Web Resources: Customisation and Personalisation. In Wallace, M., Angelides, M. & Mylonas, P. (Ed.), Advances in Semantic Media Adaptation and Personalization. (pp. 1-24). Springer. eScholarID:3h1 | DOI:10.1007/978-3-540-76361_1

• 2004: Carr, L., Kampa, S., Hall, W., Bechhofer, S. & Goble, C (2004). Ontologies and Hypertext. In Staab, S. & Studer, R. (Ed.), Handbook on Ontologies. (pp. 517-532). Springer. eScholarID:3h2

Sean Bechhofer - Technical report

• 2009: Miles, Alistair, and Sean Bechhofer. (2009). SKOS Simple Knowledge Organization System Reference. http://www.w3.org/TR/skos-reference/: World Wide Web Consortium. eScholarID:66505

• 2004: Bechhofer, Sean. (2004). OWL Web Ontology Language Parsing OWL in RDF/XML. http://www.w3.org/TR/owl-parsing/: World Wide Web Consortium. eScholarID:65957

William Black - Conference contribution

• 2008: Vazquez-Reyes, S. & Black, W (2008). Evaluating Causal Questions for Questions Answering. Presented at 9th Mexican International Conference on Computer Science. Mexicali, MEXICO: Ieee Computer Soc. eScholarID:2f10

• 2005: Elkateb, S, Black, W. (2005). A bilingual dictionary with enriched lexical information. eScholarID:2b3272

Linda Brackenbury - Journal article

• 2010: Brackenbury, L.E.M.; Plana, L.A.; Pepper, J (2010). System-on-Chip Design and Implementation. IEEE Transactions on Education, 53(2), 272-281. eScholarID:106059 | DOI:10.1109/TE.2009.2014858

• 2007: BRACKENBURY LE; SHAO W. (2007). Lowering Power in an Experimental RISC Processor. Microprocessors and Microsystems, 31(5), 360-368. eScholarID:1a9915 | DOI:10.1016/j.micpro.2006.12.005

• 2002: BRACKENBURY LE; LEWIS M. (2002). CADRE: an Asynchronous Embedded DSP for Mobile Phone Applications. Design Automation for Embedded Systems, 6(4), 451-475. eScholarID:1a9916 | DOI:10.1023/A:1016519930669

Linda Brackenbury - Conference contribution

• 2008: Shao, W., Brackenbury, L. & Ieee, I (2008). Pre-processing of convolutional codes for reducing decoding power consumption. Presented at 33rd IEEE International Conference on Acoustics, Speech and Signal Processing. Las Vegas, NV: Ieee. eScholarID:2f20

• 2007: Shao, W., Brackenbury, L. & Ieee, I (2007). No-handshake asynchronous Survivor Memory Unit for a Viterbi decoder. Presented at 14th IEEE International Conference on Electronics, Circuits and Systems. Marrakech, MOROCCO: Ieee. eScholarID:2f111

• 2001: Lewis, M. & Brackenbury, L (2001). Exploiting Typical DSP Data Access Patterns and Asynchrony for a Low Power Multiported Register Bank. Presented at 7th International Symposium on Advanced Research in Asynchronous Circuits and Systems (ASYNC 2001), 11-14 March 2001, Salt Lake City, UT, USA. IEEE Computer Society. eScholarID:2h113

• 2000: Lewis, M. & Brackenbury, L (2000). An Instruction Buffer for a Low-Power DSP. Presented at 6th International Symposium on Advanced Research in Asynchronous Circuits and Systems (ASYNC 2000), 2-6 April 2000, Eilat, Israel. IEEE Computer Society. eScholarID:2h114

• 1999: Lewis, M., Garside, J. & Brackenbury, L (1999). Reconfigurable Latch Controllers for Low Power Asynchronous Circuits. Presented at 5th International Symposium on Advanced Research in Asynchronous Circuits and Systems (ASYNC '99), 19-22 April 1999, Barcelona, Spain. IEEE Computer Society. eScholarID:2h443

Andrew Brass - Journal article

• 2011: Noyes, H., Brass, A., Obara, I., Anderson, S., Archibald, A., Bradley, D., Fisher, P., Freeman, A., Gibson, J., Gicheru, M., Hall, L., Hanotte, O., Hulme, H., McKeever, D., Murray, C., Oh, S., Tate, C., Smith, K., Tapio, M., Wambugu, J., Williams, D., Agaba, M. & Kemp, S (2011). Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection. Proc Natl Acad Sci U S A, 108(22), 9304-9. eScholarID:125832 | DOI:10.1073/pnas.1013486108

• 2011: Fabre, V., Massart, R., Rachalski, A., Jennings, K., Brass, A., Sharp, T., Lesch, K., Lanfumey, L. & Hamon, M (2011). Differential gene expression in mutant mice overexpressing or deficient in the serotonin transporter: a focus on urocortin 1. Eur Neuropsychopharmacol, 21(1), 33-44. eScholarID:112448 | DOI:10.1016/j.euroneuro.2010.10.004

• 2010: Noyes, H., Agaba, M., Anderson, S., Archibald, A., Brass, A., Gibson, J., Hall, L., Hulme, H., Oh, S. & Kemp, S (2010). Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background. BMC Genomics, 11, 361. eScholarID:112450 | DOI:10.1186/1471-2164-11-361

• 2010: Goodhead, I., Archibald, A., Amwayi, P., Brass, A., Gibson, J., Hall, N., Hughes, M., Limo, M., Iraqi, F., Kemp, S. & Noyes, H (2010). A comprehensive genetic analysis of candidate genes regulating response to Trypanosoma congolense infection in mice. PLoS Negl Trop Dis, 4(11), e880. eScholarID:112452 | DOI:10.1371/journal.pntd.0000880

• 2010: Alttoa, A., Kõiv, K., Hinsley, T., Brass, A. & Harro, J (2010). Differential gene expression in a rat model of depression based on persistent differences in exploratory activity. Eur Neuropsychopharmacol, 20(5), 288-300. eScholarID:112449 | DOI:10.1016/j.euroneuro.2009.09.005

• 2010: Thompson, P., Tipney, H., Brass, A., Noyes, H., Kemp, S., Naessens, J. & Tassabehji, M (2010). Claudin 13, a member of the claudin family regulated in mouse stress induced erythropoiesis. PLoS One, 5(9), eScholarID:112451 | DOI:10.1371/journal.pone.0012667

• 2009: Li, W., Gracey, A., Mello, L., Brass, A. & Cossins, A (2009). ExprAlign--the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles. BMC Genomics, 10, 560. eScholarID:112457 | DOI:10.1186/1471-2164-10-560

• 2009: Fisher, P., Noyes, H., Kemp, S., Stevens, R. & Brass, A (2009). A systematic strategy for the discovery of candidate genes responsible for phenotypic variation. Methods Mol Biol, 573, 329-45. eScholarID:112456 | DOI:10.1007/978-1-60761-247-6_18

• 2009: Morris, D., Waters, S., McCarthy, S., Patton, J., Earley, B., Fitzpatrick, R., Murphy, J., Diskin, M., Kenny, D., Brass, A. & Wathes, D (2009). Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: repercussions for innate and adaptive immunity. Physiol Genomics, 39(1), 28-37. eScholarID:112455 | DOI:10.1152/physiolgenomics.90394.2008

• 2009: Noyes, H., Alimohammadian, M., Agaba, M., Brass, A., Fuchs, H., Gailus-Durner, V., Hulme, H., Iraqi, F., Kemp, S., Rathkolb, B., Wolf, E., de Angelis, M., Roshandel, D. & Naessens, J (2009). Mechanisms controlling anaemia in Trypanosoma congolense infected mice. PLoS One, 4(4), e5170. eScholarID:112454 | DOI:10.1371/journal.pone.0005170

• 2008: Rennie, C., Noyes, H., Kemp, S., Hulme, H., Brass, A. & Hoyle, D (2008). Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays. BMC Genomics, 9, 11. eScholarID:1f129 | DOI:10.1186/1471-2164-9-317

• 2008: Rennie, C., Hulme, H., Fisher, P., Halp, L., Agaba, M., Noyes, H., Kemp, S. & Brass, A (2008). A systematic, data-driven approach to the combined analysis of microarray and QTL data. Dev Biol (Basel), 132, 293-9. eScholarID:112461 | DOI:10.1159/000317174

• 2008: Kemp, S., Hanotte, O., Agaba, M., Noyes, H., Gibson, J., Archibald, A., Rennie, C., Hulme, H. & Brass, A (2008). Genomics approaches to study the biology underlying resistance to trypanosomiasis--some unexpected lessons. Dev Biol (Basel), 132, 89-91. eScholarID:112460 | DOI:10.1159/000317147

• 2007: Missier P, Embury S, Hedeler C, Greenwood M, Pennock JL, Brass AA. (2007). Accelerating disease gene identification through integrated SNP data analysis. LNBI 4544, 215-230. eScholarID:1d15967

• 2007: Fisher P, Hedeler C, Wolstencroft K, Hulme H, Noyes H, Kemp S, Stevens R, Brass A. (2007). A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis. Nucleic acids research, 35(16), 5625-33. eScholarID:1c7427 | DOI:10.1093/nar/gkm623

• 2007: Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., Stevens, R. & Brass, A (2007). A systematic strategy for large-scale analysis of genotype-phenotype correlations: identification of candidate genes involved in African trypanosomiasis. Nucleic Acids Res, 35(16), 5625-5633. eScholarID:1f699 | DOI:10.1093/nar/gkm623

• 2006: Wolstencroft K, Lord P, Tabernero L, Brass A, Stevens R. (2006). Protein classification using ontology classification. Bioinformatics (Oxford, England), 22(14), e530-8. eScholarID:1c5565 | DOI:10.1093/bioinformatics/btl208

• 2006: Kierstein S, Noyes H, Naessens J, Nakamura Y, Pritchard C, Gibson J, Kemp S, Brass A. (2006). Gene expression profiling in a mouse model for African trypanosomiasis. Genes and immunity, 7(8), 667-79. eScholarID:1c7428 | DOI:10.1038/sj.gene.6364345

• 2006: Fraser J, de Mello LV, Ward D, Rees HH, Williams DR, Fang Y, Fang Y, Brass A, Gracey AY, Cossins AR. (2006). Hypoxia-inducible myoglobin expression in nonmuscle tissues. Proceedings of the National Academy of Sciences of the United States of America, 103(8), 2977-81. eScholarID:1c7430 | DOI:10.1073/pnas.0508270103

• 2006: Morrison N, Wood AJ, Hancock D, Shah S, Hakes L, Gray T, Tiwari B, Kille P, Cossins A, Hegarty M, Allen MJ, Wilson WH, Olive P, Last K, Kramer C, Bailhache T, Reeves J, Pallett D, Warne J, Nashar K, Parkinson H, Sansone SA, Rocca-Serra P, Stevens R, Snape J, Brass A, Field D. (2006). Annotation of environmental OMICS data: application to the transcriptomics domain. Omics : a journal of integrative biology, 10(2), 172-8. eScholarID:1c7429 | DOI:10.1089/omi.2006.10.172

• 2005: Bishop R, Shah T, Pelle R, Hoyle D, Pearson T, Haines L, Brass A, Hulme H, Graham SP, Taracha ELN, Kanga S, Lu C, Hass B, Wortman J, White O, Gardner MJ, Nene V, de Villiers EP. (2005). Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage. Nucleic Acids Research, 33, 5503-5511. eScholarID:1c8292

• 2005: Wolstencroft KJ, Stevens R, Tabernero L, Brass A. (2005). PhosphaBase: an ontology-driven database resource for protein phosphatases. Proteins, 58(2), 290-4. eScholarID:1c4257

• 2005: Wolstencroft K, Mc Entire R, Stevens R, Tabernero L, and Brass A. (2005). Constructing Ontology-Driven Generic Protein Family Databases. Bioinformatics (Oxford, England), 21(8), 1685-92. eScholarID:1c3464 | DOI:10.1093/bioinformatics/bti158

• 2005: Datta R, deSchoolmeester ML, Hedeler C, Paton NW, Brass AM, Else KJ. (2005). Identification of novel genes in intestinal tissue that are regulated after infection with an intestinal nematode parasite. Infection and immunity, 73(7), 4025-33. eScholarID:1c3782 | DOI:10.1128/IAI.73.7.4025-4033.2005

• 2005: Hancock D, Wilson M, Velarde G, Morrison N, Hayes A, Hulme H, Wood AJ, Nashar K, Kell DB, Brass A. (2005). maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination. BMC Bioinformatics, 6, 264. eScholarID:1c4814

• 2004: Gaskell SJ, Paton NW, Brown AJ, Brass A, Hubbard SJ, Taylor CF, Lilley KS, Oliver SG, Yin Z, Whetton AD, Morrison N, Carroll K, Chater K, Evans C, Garwood C, Garwood K, Ghazal P, Hansson L, Hart S, Hesketh A, Howard J, Joens S, McLaughlin T, Mewissen M, Stead D. (2004). PEDRo: a database for storing, searching and disseminating experimental proteomics data. BMC Genomics, 5(1), 68. eScholarID:1c2704

• 2004: Garwood KL, Paton NW, Brass A, Taylor CF, Oliver SG, Runte KJ. (2004). Pedro: a configurable data entry tool for XML. Bioinformatics (Oxford, England), 20(15), 2463-5. eScholarID:1c2707 | DOI:10.1093/bioinformatics/bth251

• 2004: HinsleyTA, Thompson PD, Tipney HJ, Brass AA, Tassabehji M. (2004). Comparison of TFII-I gene family members deleted in Williams-Beuren syndrome. Protein Sci, 13(10), 2588-99. eScholarID:1d9693

• 2004: Brass A, Goble CA, Oinn TM, Lord PW, Stevens RD, Senger M, Tassabehji M, Tipney HJ, Wroe CJ. (2004). Exploring Williams-Beuren syndrome using myGrid. Bioinformatics (Oxford, England), 20 Suppl 1, I303-I310. eScholarID:1c2705

• 2004: Brass A, Cunliffe P, Hinsley TA, Tassabehji M, Tipney HJ. (2004). Comparison of TFII-I gene family members deleted in Williams-Beuren syndrome. Protein science : a publication of the Protein Society, 13(10), 2588-99. eScholarID:1c2703

• 2004: Brass A, Donnai D, Hinsley TA, Metcalfe K, Tassabehji M, Tipney HJ. (2004). Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams-Beuren syndrome. European journal of human genetics : EJHG, 12(7), 551-60. eScholarID:1c2706

• 2004: Gracey AY, Fraser EJ, Li W, Fang Y, Taylor RR, Rogers J, Brass a and Cossins A. (2004). Coping with cold: an integrative, multi-tissue analysis of the transcriptome of a poikilothermic vertebrate. Proceedings of the National Academy of Sciences of the United States of America, 101, 16970-16975. eScholarID:1a3491

• 2004: Stevens R, Tipney HJ, Wroe C, Oinn T, Senger M, Lord P, Goble C, Brass AA, Tassabehji M. (2004). Exploring Williams-Beuren Syndrome Using myGrid. Bioinformatics, Aug 4;20 Suppl 1, I303-I310. eScholarID:1d9696

• 2004: Tipney HJ, Hinsley TA, Brass AA, Metcalfe K, Donnai D, Tassabehji M. (2004). Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams-Beuren Syndrome. Eur. J. Hum.Genet., 12 (7), 551-60. eScholarID:1d9698 | DOI:10.1038/sj.ejhg.5201174

• 2003: Taylor CF, Paton NW, Garwood KL, Kirby PD, Stead DA, Yin Z, Deutsch EW, Selway L, Walker J, Riba-Garcia I, Mohammed S, Deery MJ, Howard JA, Dunkley T, Aebersold R, Kell DB, Lilley KS, Roepstorff P, Yates JR, Brass A, Brown AJ, Cash P, Gaskell SJ, Hubbard SJ, Oliver SG. (2003). A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Nature biotechnology, 21(3), 247-54. eScholarID:1c973 | DOI:10.1038/nbt0303-247

• 2003: Lord PW, Stevens RD, Brass A, Goble CA. (2003). Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics (Oxford, England), 19(10), 1275-83. eScholarID:1c1424 | DOI:10.1093/bioinformatics/btg153

• 2003: Fang Y, Brass A, Hoyle DC, Hayes A, Bashein A, Oliver SG, Waddington D, Rattray M. (2003). A model-based analysis of microarray experimental error and normalisation. Nucleic acids research, 31(16), e96. eScholarID:1c1423 | DOI:10.1093/nar/gng097

• 2002: Hoyle DC, Rattray M, Jupp R, Brass A. (2002). Making sense of microarray data distributions. Bioinformatics (Oxford, England), 18(4), 576-84. eScholarID:1c1425 | DOI:10.1093/bioinformatics/18.4.576

• 2002: Hoyle DC, Rattray M, Jupp R, Brass A. (2002). Making sense of mRNA Abundance Distributions from Microarray Experiments. Bioinformatics, 18, 576-584. eScholarID:1a2228

• 2001: R.D. Stevens, C.A. Goble, P. Baker, and A. Brass. (2001). A Classification of Tasks in Bioinformatics. Bioinformatics, 17, 180-188. eScholarID:1a3493

• 2001: Brutsche MH, Brutsche IC, Wood P, Brass A, Morrison N, Rattay M, Mogulkoc N, Simler N, Craven M, Custovic A, Egan JJ, Woodcock A. (2001). Apoptosis signals in atopy and asthma measured with cDNA arrays. Clinical and experimental immunology, 123(2), 181-7. eScholarID:1c1427

• 2001: Stevens R, Goble C, Baker P, Brass A. (2001). A classification of tasks in bioinformatics. Bioinformatics (Oxford, England), 17(2), 180-8. eScholarID:1c1426 | DOI:10.1093/bioinformatics/17.2.180

• 2000: Paton NW, Khan SA, Hayes A, Moussouni F, Brass A, Eilbeck K, Goble CA, Hubbard SJ, Oliver SG. (2000). Conceptual modelling of genomic information. Bioinformatics (Oxford, England), 16(6), 548-57. eScholarID:1c981 | DOI:10.1093/bioinformatics/16.6.548

• 2000: Stevens R, Baker P, Bechhofer S, Ng G, Jacoby A, Paton NW, Goble CA, Brass A. (2000). TAMBIS: transparent access to multiple bioinformatics information sources. Bioinformatics (Oxford, England), 16(2), 184-5. eScholarID:1c1428 | DOI:10.1093/bioinformatics/16.2.184

Andrew Brass - Journal contribution

• 2007: Dark PM, Buchan IE, Warhurst G, New JP, Gibson JM, Baker PP.G, Steve Kemp, Brass AA. (2007). Early and sustained acute falls in total serum cholesterol are associated with critical illness mortality in the setting of tight glycaemic control. Inflammation Research, 53, eScholarID:17d950

Andrew Brass - Conference contribution

• 2008: Alttoa, A., Hinsley, T., Koiv, K., Brass, A. & Harro, J (2008). Differential gene expression in rats with persistently high and low exploratory activity. Presented at 26th Collegium Internationale Neuro-Psychopharmacologicum Congress (CINP). Munich, GERMANY: Cambridge Univ Press. eScholarID:2f90

• 2007: Rennie, C., Hulme, H., Fisher, P., Hall, L., Agaba, M., Noyes, H., Kemp, S. & Brass, A (2007). A Systematic, Data-driven Approach to the Combined Analysis of Microarray and QTL Data. Presented at International Symposium on Animal Genomics for Animal Health. Paris, FRANCE: Karger. eScholarID:2f117

• 2007: Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., Stevens, R. & Brass, A (2007). A systematic strategy for the discovery of candidate genes responsible for phenotypic variation. Presented at 3rd International-Society-for-Computational-Biology-Student-Council Symposium held at the 15th Annual International Conference on Intelligent Systems for Molecular Biology. Vienna, AUSTRIA: Biomed Central Ltd. eScholarID:2f162 | DOI:10.1186/1471-2105-8-s8-p7

• 2003: Lord PW, Stevens RD, Brass A, Goble CA. (2003). Semantic similarity measures as tools for exploring the gene ontology. eScholarID:2c13

David Bree - Journal article

• 2005: BREE DS; G DANIEL; NL JOSEPH. (2005). Stochastic volatility and the goodness-of-fit of the Heston model. Quantitative Finance, 5(2), 199-211. eScholarID:1a10195 | DOI:10.1080/14697680500148521

David Bree - Conference contribution

• 2004: BREE DS; AN YU. (2004). A Clock-less implementation of the Advanced Encryption Standard resistant to power and timing attacks. eScholarID:2a789

David Bree - Book contribution

• 2005: BREE DS; NL JOSEPH; E KALYVAS. (2005). Using non-parametric search algorithms to forecast daily excess stock returns. In J. M. Binner and G. Kendall (Ed.), Applications of Artificial Intelligence in Finance and Economics. JAI Press. eScholarID:3a246

Gavin Brown - Journal article

• 2012: G. Brown, A. Pocock, M. Zhao, M. Lujan. (2012). Conditional Likelihood Maximisation: A Unifying Framework for Mutual Information Feature Selection. Journal of Machine Learning Research (in press), 13, 26-46. eScholarID:136435

Rognvald Blance - Journal article

• 2009: Blance RR, Sims A, Anderson E, Howell A-, Clarke RB. (2009). Normal breast tissue implanted into athymic nude mice identifies biomarkers of the effects of human pregnancy levels of estrogen. Cancer Prev Res (Phila Pa), 2(3), 257-264. eScholarID:1d32439 | DOI:10.1158/1940-6207.CAPR-08-0161

Andrew Brown - Technical report

• 2009: Brown, Andy, and Caroline Jay. (2009). SASWAT Technical Requirements. Manchester, UK: University of Manchester. eScholarID:86489

• 2008: Brown, Andy, and Caroline Jay. (2008). A Review of Assistive Technologies: Can users access dynamically updating information?. Manchester, UK: University of Manchester. eScholarID:86486

• 2008: Brown, Andy, Caroline Jay, and Alex Q Chen. (2008). Techniques for dynamically updating a web page. Manchester, UK: University of Manchester. eScholarID:86487

Andrew Carpenter - Journal article

• 2011: Roland Ukor, Andy Carpenter. (2011). Service selection and horizontal multi-sourcing in process-oriented capability outsourcing. Journal of Software Maintenance and Evolution: Research and Practice, eScholarID:152072 | DOI:10.1002/smr.557

Andrew Carpenter - Conference contribution

• 2010: Osama Elshakankiry, Andy Carpenter and Ning Zhang. (2010). A Novel Scheme for Supporting Location Authentication of Mobile Nodes. Presented at Second International ICST Conference on Security and Privacy in Mobile Information and Communication Systems (Mobisec2010). Catania, Italy. eScholarID:112573 | DOI:10.1007/978-3-642-17502-2_8

• 2009: Roland Ukor, Andy Carpenter. (2009). Goal-Oriented Service Selection in Business Processes. Presented at Fourth International Conference on Software Engineering Advances, 2009 (ICSEA '09). Porto, Portugal: IEEE. eScholarID:121814

• 2009: Roland Ukor, Andy Carpenter. (2009). Minimising Lifecycle Transitions in Service-Oriented Business Processes. Presented at Business Process Modeling, Development and Support (BPMDS'09). Amsterdam: Springer-Verlag. eScholarID:11063 | DOI:10.1007/978-3-642-01862-6_11

• 2009: Roland Ukor, Andy Carpenter. (2009). Flexible Service Selection Optimization Using Meta-Metrics. Presented at 2009 IEEE Congress on Services (Services 2009). IEEE Computer Society. eScholarID:12549 | DOI:10.1109/SERVICES-I.2009.71

• 2008: Osama Elshakankiry, Andy Carpenter, Ning Zhang. (2008). A New Secure Binding Management Protocol for Mobile IPv6 Networks. Presented at 2008 The Fourth International Conference on Information Assurance and Security (IAS 08). Naples: IEEE Computer Society. eScholarID:12672 | DOI:10.1109/IAS.2008.41

• 2008: Roland Ukor, Andy Carpenter. (2008). On Modelled Flexibility and Service Selection Optimisation. Presented at Business Process Modeling, Development and Support (BMPDS'08). Montpellier: CEUR. eScholarID:12534

• 2008: Andy Carpenter, Nick Filer. (2008). Model Driven Protocol Implementation Tools. Presented at ICT-MobileSummit 2008. Stockholm. eScholarID:68939

• 2008: Andy Carpenter. (2008). Implementation of a Configurable Protocol Analyser using an MDSD Approach. Presented at ICT-MobileSummit 2008. Stockholm. eScholarID:68950

• 2006: C. Corzo, F. Corzo S., Ning Zhang and Andy Carpenter. (2006). Using Automated Banking Certificates to Detect Unauthorised Financial Transactions. Presented at Financial Cryptography and Data Security '06. Anguilla, British West Indies: Springer-Verlag. eScholarID:12703 | DOI:10.1007/11889663_3

• 2003: Andy Carpenter, Alan R. Williams, David Withers, Hilary Kahn. (2003). Model Driven Business Process Enactment. Presented at Product Data Technology (PDT) Europe 2003. Manchester. eScholarID:13262

• 2003: Andy Carpenter, Hilary Kahn, David Withers, Alan R. Williams. (2003). Creation of Heterogeneous Information Repositories from EXPRESS Specifications. Presented at Product Data Technology (PDT) Europe 2003. Manchester. eScholarID:2a784

• 2003: Xinming Jin, Andy Carpenter, Hilary Kahn. (2003). Generation of Business Process Simulation. Presented at Product Data Technology (PDT) Europe 2003. Manchester. eScholarID:13282

• 2000: Kahn, H., Carpenter, A. & Whitaker, N (2000). A Web-Based System for Assessing and Searching for Designs. Presented at 2000 Design, Automation and Test in Europe (DATE 2000), 27-30 March 2000, Paris, France. IEEE Computer Society. eScholarID:2h131

• 2000: Kahn, H. & Carpenter, A (2000). Using information models to support web-based search. Presented at Challenges of Information Technology Management in the 21st Century, 2000 Information Resources Management Association International Conference, Anchorage, Alaska, USA, May 21-24, 2000. IDEA Group Publishing. eScholarID:2h130

Andrew Carpenter - Book contribution

• 1900: Elshakankiry, O., Carpenter, A., Zhang, N., Schmidt, A., Russello, G., Lioy, A., Prasad, N. & Lian, S A Novel Scheme for Supporting Location Authentication of Mobile Nodes Security and Privacy in Mobile Information and Communication Systems. In Akan, O., Bellavista, P., Cao, J., Dressler, F., Ferrari, D., Gerla, M., Kobayashi, H., Palazzo, S., Sahni, S., Shen, X., Stan, M., Xiaohua, J., Zomaya, A. & Coulson, G. (Ed.), ( 47, pp. 91-102). Springer Berlin Heidelberg. eScholarID:152120 | DOI:10.1007/978-3-642-17502-2_8

Barry Cheetham - Journal article

• 2005: Nenadic, A., Zhang, N., Cheetham, B. & Goble, C (2005). RSA-based Certified Delivery of E-Goods Using Verifiable and Recoverable Signature Encryption. Journal of Universal Computer Science, 11(1), 175-192. eScholarID:1h75

• 2005: Nenadic, A., Zhang, N., Cheetham, B. & Goble, C (2005). RSA-based Certified Delivery of E-Goods Using Verifiable and Recoverable Signature Encryption. J. UCS, 11(1), 175-192. eScholarID:1h251

Barry Cheetham - Conference contribution

• 2005: Tramantzas A, Cheetham BMG, Van Harmelen M, Walker A C. (2005). Peer-to-Peer Networks Based on Hierarchies of Trust. Presented at Fifth IEEE International Conference on Peer-to-Peer Computing (P2P 2005), 31 August - 2 September 2005, Konstanz, Germany. Konstanz, Germany: IEEE Computer Society. eScholarID:2h132

• 2004: CHEETHAM BM. (2004). Professional quality voice over WLAN. eScholarID:2a796

• 2002: Hiew Y.H, Smith J.A., Earis JE, CHEETHAM BMG, Woodcock A.A (2002). DSP algorithm for cough identification and counting. Presented at IEEE Int Conf on Acoustics, Speech & Signal Processing 2002 (ICASSP 2002). Orlando, USA: IEEE. eScholarID:2a797

• 2002: Li N, CHEETHAM B.M.G (2002). A variable frame-rate scheme for sinusoidal transform coding. Presented at IEEE International Conference of Acoustic, Speech and Signal Processing (ICASSP 2002). Orlando, USA: IEEE. eScholarID:2a798

• 2001: Ho M.S., Molyneux D.Y., CHEETHAM BMG. (2001). A hybrid sub-band sinusoidal coding scheme. Presented at EuroSpeech 2001. Aalborg, Denmark. eScholarID:2a799

Ke Chen - Journal article

• 2011: Chen K. and Salman A. (2011). Learning speaker-specific characteristics with a deep neural architecture. IEEE Transactions on Neural Networks, 22(11), 1744-1756. eScholarID:135132 | DOI:10.1109/TNN.2011.2167240

• 2011: Yang Y. and Chen K. (2011). Time series clustering via RPCL network ensemble with different representations. IEEE Transactions on Systems, Man, and Cybernetics, Part C: Applications and Reviews, 41(2), 190-199. eScholarID:111762 | DOI:10.1109/TSMCC.2010.2052608

• 2011: Yang Y. and Chen K. (2011). Temporal data clustering via weighted clustering ensemble with different representations. IEEE Transactions on Knowledge and Data Engineering, 23(2), 307-320. eScholarID:111760 | DOI:10.1109/TKDE.2010.112

• 2011: Chen K. and Wang S.H. (2011). Semi-supervised learning via regularized boosting working on multiple semi-supervised assumptions. IEEE Transactions on Pattern Analysis and Machine Intelligence, 33(1), 129-143. eScholarID:111763 | DOI:10.1109/TPAMI.2010.92

• 2010: Shaukat A. and Chen K. (2010). Exploring language-independent emotional acoustic features via feature selection. CoRR, abs/cs/1009.0117, 1-15. eScholarID:111756 | DOI:arXiv:1009.0117v1

• 2010: Shaukat A. and Chen K. (2010). Emotional state categorization from speech: machine vs. human. CoRR, abs/cs/1009.0108, 1-14. eScholarID:111749 | DOI:arXiv:1009.0108v1

• 2008: Chen, K (2008). Adaptive smoothing via contextual and local discontinuities (vol 27, pg 1552, 2005). IEEE Trans. Pattern Anal. Mach. Intell, 30(10), 1872. eScholarID:1f423 | DOI:10.1109/tpami.2008.186

• 2005: Chen K. (2005). Adaptive smoothing via contextual and local discontinuities. IEEE Transactions on Pattern Analysis and Machine Intelligence, 27(10), 1552-1567. eScholarID:1a9834 | DOI:10.1109/TPAMI.2005.190

• 2005: Chen K. (2005). On the use of different speech representations for speaker modeling. IEEE Transactions on Systems, Man, and Cybernetics Part C: Applications and Reviews, 35(3), 301-314. eScholarID:5262 | DOI:10.1109/TSMCC.2005.848166

• 2003: Chen K. (2003). Towards better making a decision in speaker verification. Pattern Recognition, 36(2), 329-346. eScholarID:1a9831 | DOI:10.1016/S0031-3203(02)00034-1

• 2002: Chen K and Wang D.L. (2002). A dynamically coupled neural oscillator network for image segmentation. Neural Networks, 15(3), 423-439. eScholarID:1a9832 | DOI:10.1016/S0893-6080(02)00028-X

• 2002: Wang L., Chen K. and Chi H. (2002). Capture inter-speaker information with a neural network for speaker identification. IEEE Transactions on Neural Networks, 13(2), 436-445. eScholarID:76871 | DOI:10.1109/72.991429

• 2002: Chen K., Wu T.Y., and Zhang H.J. (2002). On the use of nearest feature line for speaker identification. Pattern Recognition Letters, 23(14), 1735-1746. eScholarID:76874 | DOI:10.1016/S0167-8655(02)00147-2

• 2001: Chen K. (2001). Review on supervised and unsupervised pattern recognition: feature extraction and computational intelligence. IEEE Transactions on Neural Networks, 12(3), 644-647. eScholarID:135888 | DOI:10.1109/TNN.2001.925570

• 2001: Liu X., Chen K., Wang D. (2001). Extraction of hydrographic regions from remote sensing images using an oscillator network with weight adaptation. IEEE Transactions on Geoscience and Remote Sensing, 39(1), 207-211. eScholarID:76875 | DOI:10.1109/36.898687

• 2001: Chen K. and Wang D.L. (2001). Perceiving geometric patterns: from spirals to inside-outside relations. IEEE Transactions on Neural Networks, 12(5), 1084-1102. eScholarID:1a9833 | DOI:10.1109/72.950138

• 2000: Chen K., Wang D.L., and Liu X.W. (2000). Weight adaptation and oscillatory correlation for image segmentation. IEEE Transactions on Neural Networks, 11(5), 1106-1123. eScholarID:76878 | DOI:10.1109/72.870043

• 1999: Chen K. and Chi H. (1999). A modular neural network architecture for pattern classification on different feature sets. International Journal of Neural Systems, 9(6), 563-581. eScholarID:76880 | DOI:10.1142/S0129065799000587

• 1999: Chen K., Xu L., and Chi H. (1999). Improved learning algorithm for mixtures of experts in multiclass classification. Neural Networks, 12(9), 1229-1252. eScholarID:76879 | DOI:10.1016/S0893-6080(99)00043-X

• 1998: Chen K. and Chi H. (1998). A method of combining multiple probabilistic classifiers through soft computation on different feature sets. Neurocomputing, 20(1-3), 227-252. eScholarID:76882 | DOI:10.1016/S0925-2312(98)00019-8

• 1998: Chen K. (1998). A connectionist method for pattern classification with diverse features. Pattern Recognition Letters, 19(7), 545-558. eScholarID:76881 | DOI:10.1016/S0167-8655(98)00055-5

• 1997: Chen K., Wang L., and Chi H. (1997). Methods of combining multiple classifiers with different features and their applications to text-independent speaker identification. International Journal of Pattern Recognition and Artificial Intelligence, 11(3), 417-445. eScholarID:76889 | DOI:10.1142/S0218001497000196

• 1997: Chen K., Yu X., and Chi H. (1997). Combining linear discriminant functions with neural networks for supervised learning. Neural Computing & Applications, 6(1)(1), 19-41. eScholarID:76883 | DOI:10.1007/BF01670150

• 1997: Chen K., Yang L.P., Yu X., and Chi H. (1997). A self-generating modular neural network architecture for supervised learning. Neurocomputing, 16(1), 33-48. eScholarID:76890 | DOI:10.1016/S0925-2312(96)00057-4

• 1996: Chen K., Xie D.H., and Chi H. (1996). A modified HME architecture for text-dependent speaker identification. IEEE Transactions on Neural Networks, 7(5), 1309-1313. eScholarID:76891 | DOI:10.1109/72.536325

• 1996: Chen K., Xie D.H., and Chi H. (1996). Speaker identification using time-delay HMEs. International Journal of Neural Systems, 7(1), 29-43. eScholarID:76893 | DOI:10.1142/S012906579600004X

• 1996: Chen K., Xie D.H., and Chi H. (1996). Text-dependent speaker identification based upon input/output HMMs: An empirical study. Neural Processing Letters, 3(2), 81-89. eScholarID:76892 | DOI:10.1007/BF00571681

Ke Chen - Conference contribution

• 2011: Shaukat A. and Chen K. (2011). Emotional speech recognition via soft-competition on different acoustic representations. Presented at International Joint Conference on Neural Networks (IJCNN'11). San Jose, U.S.A.. eScholarID:135140

• 2011: A. Salman and K. Chen. (2011). Exploring speaker-specific characteristics with deep learning. Presented at International Joint Conference on Neural Networks (IJCNN'11). San Jose, U.S.A.: IEEE Press. eScholarID:135139

• 2011: Chen K. and Salman A. (2011). Extracting speaker-specific information with a regularized Siamese deep network. Presented at Annual Conference on Neural Information Processing Systems. Granada, Spain: MIT Press. eScholarID:135654

• 2011: Hau D. and Chen K. (2011). Exploring hierarchical speech representations with a deep convolutional neural network. Presented at United Kingdom Annual Workshop on Computational Intelligence (UKCI'11). Manchester, U.K.. eScholarID:135141

• 2010: Yang Y. and Chen K. (2010). Unsupervised learning via iteratively constructed clustering ensemble. Presented at International Joint Conference on Neural Networks. Barcelona, Spain: IEEE Press. eScholarID:111737

• 2008: Shaukat A. and Chen K. (2008). Towards automatic emotional state categorization from speech signals. Presented at InterSpeech. Brisbane, Australia. eScholarID:6644

• 2007: Wang S. and Chen K. (2007). Ensemble learning with active data selection for semi-supervised pattern classification. Presented at International Joint Conference on Neural Networks. Orlando, FL: IEEE Press. eScholarID:2f100

• 2007: Chen K. and Wang S. (2007). Regularized boost for semi-supervised learning. Presented at Annual Conference on Neural Information Processing Systems. Vancouver, Canada: MIT Press. eScholarID:6023

• 2006: Yang Y. and Chen K. (2006). An ensemble of competitive learning networks with different representations for temporal data clustering. Presented at International Joint Conference on Neural Networks. eScholarID:5752

• 2005: Chen K. (2005). Boosting input/output hidden Markov models for sequence classification. Presented at International Conference on Natural Computation. Springer-Verlag. eScholarID:68275

• 2004: Chen K. (2004). Speaker modeling with various speech representations. Presented at International Conference on Biometric Authentication. Hong Kong: Springer. eScholarID:76896

• 2004: Chen K. and Yeung S. (2004). Personalized news reading via hybrid learning. Presented at International Conference on Intelligent Data Engineering and Automated Learning. Springer. eScholarID:76897

• 2003: Wu T.Y., Lu L., Chen K. and Zhang H.J. (2003). UBM-based real-time speaker segmentation for broadcasting news. Presented at International Conference on Acoustics, Speech, and Signal Processing. IEEE Press. eScholarID:76901

• 2003: Luo D.S. and Chen K. (2003). On generalization of statistical ensemble learning on mismatch conditions: An empirical study. Presented at International Conference on Neural Information Processing. eScholarID:76900

• 2003: Wu T.Y., Lu L., Chen K., and Zhang H.J. (2003). Universal background models for real-time speaker change detection. Presented at International Conference on Multimedia Modeling. IEEE Press. eScholarID:76903

• 2003: Luo D.S. and Chen K. (2003). Refine decision boundaries of a statistical ensemble by active learning. Presented at International Joint Conference on Neural Networks. IEEE Press. eScholarID:76898

• 2003: Wu T.Y., Lu L., Chen K., Zhang H.J. (2003). Incremental speaker adaptation based on universal background model and its applications on speaker segmentation. Presented at International Conference on MultiMedia & Expo. ACM Press. eScholarID:76902

• 2002: Luo D.S. and Chen K. (2002). A comparative study of statistical ensemble methods on mismatch conditions. Presented at International Joint Conference on Neural Networks. IEEE Press. eScholarID:76905

• 2002: Li X.L. and Chen K. (2002). Mandarin Verbal Information Verification. Presented at International Conference on Acoustics, Speech, and Signal Processing. IEEE Press. eScholarID:76904

• 2002: Luo D.S. and Chen K. (2002). On the use of statistical ensemble methods for telephone-line speaker identification. Presented at IEEE International Conference on Communications, Circuits and Systems. eScholarID:76907

• 2001: Wu T.Y. and Chen K. (2001). On the use of nearest feature line for speaker identification. Presented at International Conference on Neural Information Processing. eScholarID:76909

• 2001: Wang L., Chen K., and Chi H. (2001). Towards better capturing inter-speaker information by active learning for speaker identification. Presented at International Joint Conference on Neural Networks. IEEE Press. eScholarID:76910

• 2001: Chen K., Wang D.L., and Liu X. (2001). Image segmentation by weight adaptation and oscillatory correlation. Presented at International Conference on Neural Information Processing. Shanghai. eScholarID:76908

• 2001: Meng H., Chan S.F., Wong Y.F., Chan C.C., Wong Y.W., Fung T.Y., Tsui W.C., Chen K., Wang L., Wu T.Y., li X.L., Lee T., Choi W.N., Ching P.C., and Chi H.S. (2001). ISIS: A learning system with combined interaction and delegation dialogs. Presented at European Conference on Speech Communication and Technology (Eurospeech). Aalborg, Denmark. eScholarID:135853

• 2000: Liu J.H. and Chen K. (2000). Pruning abnormal data for better making a decision in speaker verification. Presented at International Conference on Spoken Language Processing (ICSLP'2000). Beijing, China. eScholarID:135854

• 2000: Meng H., Chan S.F., Wong Y.F., Fung T.Y., Tsui W.C., Lo T.H., Chan C.C., Chen K., Wang L., Wu T.Y., Li X.L., Lee T., Choi W.N., Wong Y.W., Ching P.C., and Chi H.S. (2000). ISIS: A multilingual spoken dialog system developed with CORBA and KQML agents. Presented at International Conference on Spoken Language Processing (ICSLP'2000). eScholarID:135855

• 2000: Wang L., Chen K., and Chi H. (2000). Optimal fusion of diverse feature sets for speaker identification: An alternative method. Presented at International Conference on Spoken Language Processing. eScholarID:76912

• 2000: Wang L., Chen K., and Chi H. (2000). Capture inter-speaker information by a neural network for speaker identification. Presented at International Joint Conference on Neural Networks. eScholarID:76911

• 1999: Chen K. and Wang D.L. (1999). Image segmentation by a dynamically coupled neural oscillator network. Presented at International Joint Conference on Neural Networks. IEEE Press. eScholarID:76915

• 1999: Chen K. and Chi H. (1999). An alternative method of pattern classification on different feature sets. Presented at International Joint Conference on Neural Networks. IEEE Press. eScholarID:76913

• 1998: Chen K. and Wang D.L. (1998). Perceiving spirals and inside/outside relations by a neural oscillator network. Presented at International Joint Conference on Neural Networks. IEEE Press. eScholarID:76918

• 1998: Bao W.Q., Chen K., and Chi H. (1998). An HMM/MFNN hybrid architecture based on stacked generalization for speaker identification. Presented at International Joint Conference on Neural Networks. eScholarID:76917

• 1998: Chen K. and Wang D.L. (1998). Perceiving without learning: from spirals to inside/outside relations. Presented at Annual Conference on Neural Information Processing Systems. MIT Press. eScholarID:76916

• 1997: Wang L., Chen K., and Chi H.S. (1997). Methods of linear combination with different features. Presented at International Conference on Neural Information Processing (ICONIP-97). Dunedin/Queenstown, New Zealand. eScholarID:135856

• 1997: Chen K. and Chi H.S. (1997). A modified mixtures of experts architecture for classification with diverse features. Presented at IEEE International Conference on Neural Networks (ICNN-97). Houston, U.S.A.. eScholarID:135857

• 1996: Chen K., Yu X., and Chi H.S. (1996). Text-dependent speaker identification based on the modular tree: An empirical study. Presented at International Conference on Neural Information Processing (ICONIP-96). eScholarID:135859

• 1996: Chen K., Xie D.H., and Chi H.S. (1996). Combine multiple time-delay HMEs for speaker identification. Presented at IEEE International Conference on Neural Networks (ICNN-96). Washington D.C., U.S.A.. eScholarID:135863

• 1996: Chen K. and Chi H.S. (1996). A method of combining multiple classifiers with different features. Presented at International Conference on Neural Information Processing (ICONIP-96). Hong Kong. eScholarID:135858

• 1996: Chen K., Yu X., and Chi H.S. (1996). Classification by combining Fisher's linear discriminant with neural networks. Presented at World Congress on Neural Networks (WCNN-96). San Diego, U.S.A.. eScholarID:135860

• 1996: Chen K., Xie D.H., and Chi H.S. (1996). Speaker identification based on input/output HMMs. Presented at Proceeding of World Congress on Neural Networks (WCNN-96). San Diego, U.S.A.. eScholarID:135861

• 1995: Chen K., Xie D.H., and Chi H.S. (1995). Speaker identification based on the time-delay hierarchical mixture of experts. Presented at IEEE International Conference on Neural Networks (ICNN-95). Perth, Australia. eScholarID:135864

• 1995: Chen K., Yang L.P., Yu X., and Chi H.S. (1995). A self-architecture modular neural network. Presented at International Conference on Neural Information Processing (ICONIP-95). Beijing, China. eScholarID:135865

• 1993: Chen K. and Ishikawa M. (1993). 3-D shape recovery by incorporating context; A connectionist approach. Presented at International Joint Conference of Neural Networks (IJCNN-93). Nagoya, Japan. eScholarID:135867

• 1991: Chen K., Yu T., and Yan P.F. (1991). A novel model of associative memory with biorthogonal properties. Presented at International Joint Conference of Neural Networks (IJCNN-91). Singapore. eScholarID:135868

• 1990: Chen H.S. and Chen K. (1990). A model-directed image understanding system. Presented at International Conference on Industrial and Engineering Applications of AI and Expert Systems. Charleston, U.S.A.. eScholarID:135869

Ke Chen - Book

• 2007: Chen K. and Wang L. Chen K. and Wang L. (Ed.) (2007). Trends in Neural Computation. Berlin: Springer Verlag. eScholarID:5937

• 2005: Wang L., Chen K. and Ong Y. Wang L., Chen K. and Ong Y. (Ed.) (2005). Advances in Natural Computation. Berlin: Springer-Verlag. eScholarID:5815

Ke Chen - Book contribution

• 2007: Yang Y.; Chen K (2007). Combining competitive learning networks of various representations for sequential data clustering. Trends in Neural Computation. (pp. 315-336). Berlin: Springer-Velag. eScholarID:6696

• 2002: Chen K. (2002). Personalize mobile access by speaker authentication. In David D. Zhang (Ed.), Biometrics Resolutions for Authentication in an E-World. (pp. 31). U.S.A.: Kluwer Academic Publishers. eScholarID:76895

Ke Chen - Newspaper/magazine contribution

• 2005: Chen K. (2005). On the dynamic pattern analysis, discovery and recognition. IEEE Systems, Man, and Cybernetics Society E-Newsletter, 4(12), eScholarID:67092

Timothy Cootes - Journal article

• 2010: T.F. Cootes, C.J.Twining, V.S.Petrovic, K.O. Babalola and C.J.Taylor. (In-press). Computing Accurate Correspondences across Groups of Images. IEEE Pattern Analysis and Machine Intelligence, eScholarID:82690 | DOI:10.1109/TPAMI.2009.193

• 2010: M.G.Roberts, E.Pacheco, T.F. Cootes and J.Adams. (In-press). Detection of vertebral fracture in DXA VFA images using statistical models of appearance and a semi-automatic segmentation. Osteoporosis International, eScholarID:82693

• 2010: R.H.Davies, C.J.Twining, T.F.Cootes and C.J.Taylor. (In-press). Building 3D Statistical Shape Models by Direct Optimisation. IEEE Trans. Medical Imaging, eScholarID:82691

• 2009: Babalola, K, Patenaude, B, Aljabar, P, Schnabel, J, Kennedy, D, Crum, W, Smith, S, Cootes, TF, Jenkinson, M, Rueckert, D. (2009). An evaluation of four automatic methods of segmenting the subcortical structures in the brain. Neuroimage, eScholarID:1d20031 | DOI:10.1016/j.neuroimage.2009.05.029

• 2008: Cristinacce D, Cootes TF. (2008). Automatic Feature Localisation with Constrained Local Models. Pattern Recognition, 41, eScholarID:1d20034 | DOI:10.1016/j.patcog.2008.01.024

• 2008: T.F. Cootes, C.J. Twining, K.O.Babalola and C.J. Taylor. (2008). Diffeomorphic Statistical Shape Models. Image and Vision Computing, 26, 326-332. eScholarID:28982 | DOI:10.1016/j.imavis.2006.12.005

• 2007: R.Larsen, M.B. Stegmann, S.Darkner, S.Forchhammer, Cootes TF. (2007). Texture enhanced appearance models. Computer Vision and Image Understanding, 106, 20-30. eScholarID:1d20033

• 2006: Roberts M, Cootes TF, Adams JE. (2006). Vertebral morphometry: semi-automated determination of detailed vertebral shape from dual-energy X-ray absorptiometry images using Active Appearance Models. Invest Radiol, 41(12), 849-859. eScholarID:1d14717

• 2004: Cootes TF, Taylor CJ. (2004). Anatomical statistical models and their role in feature extraction. British Journal of Radiology, 77, s133-s139. eScholarID:1d14140

• 2003: Davies R, Twining CJ, Allen P D, Cootes TF, Taylor CJ. (2003). Building optimal 2D Statistical Shape Models. Image and Vision Computing, 21, 1171-1182. eScholarID:1d25744

• 2003: Bromiley P, Thacker NA, Marietta Scott, Pokric M, Lacey AJ, Cootes TF. (2003). Bayesian and Non-Bayesian Probabilistic Models for Image Analysis. IVC Special Edition: The use of Probabilistic Models in Computer Vision, eScholarID:1d1915

• 2002: I Matthews, Cootes TF, J A Bangham. (2002). Extraction of Visual Features for Lipreading. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24, 198-213. eScholarID:1d33890

• 2002: Cootes TF, G.V. Wheeler, K.N.Walker, Taylor CJ. (2002). View-Based Active Appearance Models. Image and Vision Computing, 20, 657-664. eScholarID:1d23249

• 2002: Costen NP, Cootes TF, G J Edwards, Taylor CJ. (2002). Automatic Extraction of the Face Identity-Subspace. Image and Vision Computing, 20, 319-329. eScholarID:1d25178

• 2002: Davies R, Twining CJ, Cootes TF, Waterton C, Taylor CJ. (2002). A minimum description length approach to statistical shape modelling. IEEE Transactions on Medical Imaging, 21, 525-537. eScholarID:1d23251

• 2002: Davies R, Twining CJ, Allen P D, Cootes TF, Taylor CJ. (2002). Building Optimal 2D Statistical Shape Models. Image and Vision Computing, eScholarID:1d23471

• 2002: COOTES TF; WHEELER G; WALKER K; TAYLOR C. (2002). View-based active appearance models. Image and Vision Computing, 20(9-10), 657-664. eScholarID:1a10225 | DOI:10.1016/S0262-8856(02)00055-0

• 2002: COOTES TF; LANITIS A; TAYLOR C. (2002). Towards automatic simulation of aging affects on face images. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(4), 442-455. eScholarID:1a10224 | DOI:10.1109/34.993553

• 2002: COOTES TF; MATTHEWS I; BANGHAM J. (2002). Extraction of Visual Features for Lipreading. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(2), 198-213. eScholarID:1a10223 | DOI:10.1109/34.982900

• 2001: Lanitis AA, Taylor CJ, Cootes TF. (2001). Towards automatic simulation of ageing effects on face images. IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol.24, No. 4, pp.442-455. eScholarID:1d23287

• 2001: Cootes TF, GJ Edwards, Taylor CJ. (2001). Active appearance models. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23, 681-685. eScholarID:1d23285

• 2001: I Matthews, Cootes TF, JA Bangham. (2001). Extraction of Visual Features for Lipreading. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24, 198-213. eScholarID:1d23288

• 2001: COOTES TF; EDWARDS G; TAYLOR C. (2001). Active appearance models. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23(6), 681-685. eScholarID:1a10222 | DOI:10.1109/34.927467

• 1999: Cootes TF, Taylor CJ. (1999). A mixture model for representing shape variation. Image and Vision Computing, 17(8), 567-574. eScholarID:1d23284

• 1997: T Ahmad, Taylor CJ, Lanitis AA, Cootes TF. (1997). Tracking and recognising hand gestures using statistical shape models. Image and Vision Computing, 15(5), 345-352. eScholarID:1d23277

• 1997: Lanitis AA, Taylor CJ, Cootes TF. (1997). Automatic interpretation and coding of face images using flexible models. IEEE Transactions on Pattern Analysis and Machine Intelligence, 19(7), 743-756. eScholarID:1d23279

• 1997: Zhu X-, Cootes TF, Hutchinson CE, Hawnaur JM, Adams JE. (1997). 3D MR image synthesis based on gradient recalled echo incorporating binomial composite pulses. Medical Imaging, Understanding and Analysis, 105-108. eScholarID:1d4049

• 1997: Sozou PD, Cootes TF, Taylor CJ, EC Di Mauro. (1997). Non-linear point distribution modelling using a multi-layer perceptron. Image and Vision Computing, 15(6), 457-463. eScholarID:1d23281

• 1997: Taylor CJ, Cootes TF, Lanitis AA, G Edwards, Smyth PP, Kotcheff AAK. (1997). Model-based interpretation of complex and variable images. Philosophical transactions of the Royal Society of London [B] Biological Sciences, 352, 1267-74. eScholarID:1d23283

• 1996: Cootes TF, EC Di Mauro, Taylor CJ. (1996). Flexible 3D models from uncalibrated cameras. Image and Vision Computing, 14(8), 581-587. eScholarID:1d23273

• 1996: Hill A-, Cootes TF, Taylor CJ. (1996). Active shape models and the shape approximation problem. Image and Vision Computing, 14(8), 601-607. eScholarID:1d23275

• 1996: Cootes TF, GJ Page, Jackson CB, Taylor CJ. (1996). Statistical grey-level models for object location and identification. Image and Vision Computing, 14(8), 53-540. eScholarID:1d23272

• 1995: Cootes TF, Cooper DH, Taylor CJ, Graham J. (1995). Active Shape Models - Their training and application. Computer Vision and Image Understanding, 61, 38-59. eScholarID:1d1862

• 1995: Lanitis AA, Taylor CJ, Cootes TF. (1995). Automatic face identification system using flexible appearance models. Image and Vision Computing, 13(5), 393-401. eScholarID:1d23268

• 1995: Sozou PD, Cootes TF, Taylor CJ, EC Di Mauro. (1995). A non-linear generalisation of point distribution models using polynomial regression. Image and Vision Computing, 13(5), 451-457. eScholarID:1d23270

• 1995: Cootes TF, Taylor CJ. (1995). Combining point distribution models with shape models based on finite-element analysis. Image and Vision Computing, 13(5), 403-409. eScholarID:1d23266

• 1994: Hill A-, Cootes TF, Taylor CJ, K Lindley. (1994). Medical image interpretation:A generic approach using deformable templates. Journal of Medical Informatics, 19(1), 47-59. eScholarID:1d23265

• 1994: Cootes TF, Hill A-, Taylor CJ, Haslam JJH1. (1994). The use of active shape models for locating structures in medical images. Image and Vision Computing, 12(6), 276-285. eScholarID:1d23263

• 1994: Zhu X-, Hutchinson CE, Hawnaur JM, Cootes TF, Taylor CJ, Isherwood I. (1994). Magnetic Resonance image synthesis using a flexible model. British Journal of Radiology, 67, 976-982. eScholarID:1d4039

• 1992: Cootes TF, Cooper DH, Taylor CJ, Graham J. (1992). A trainable method of parametric shape description. Image and Vision Computing, 10, 289-294. eScholarID:1d1867

Timothy Cootes - Conference contribution

• 2011: C.Lindner, S. Thiagarajah, J.M. Wilkinson, arcOGEN, G.A. Wallis, T.F. Cootes. (2011). Short-term variability of proximal femur shape in anteroposterior pelvic radiographs. Presented at Medical Image Understanding and Analysis. eScholarID:150032

• 2011: P. Sauer, T.F. Cootes, C.J. Taylor. (2011). Accurate Regression Procedures for Active Appearance Models. Presented at British Machine Vision Conference. eScholarID:150027

• 2011: P. Zhang and T.F.Cootes. (2011). Automatic Part Selection for Groupwise Registration. Presented at Information Processing in Medical Imaging. eScholarID:150034

• 2010: A.Caunce and T.F.Cootes. (2010). Improved 3D Model Search for Facial Feature Location and Pose Estimation in 2D images. Presented at British Machine Vision Conference. BMVA. eScholarID:84468

• 2010: T.Williams, G.Vincent, T.F.Cootes, S.Balamoody, C.Hutchinson, J.Waterton and C.J.Taylor. (2010). Automatic segmentation of bones and inter-image anatomical correspondence by volumetric statistical modelling of knee MRI. Presented at Int. Symp. on Biomedical Imaging (ISBI). IEEE. eScholarID:82682

• 2010: K.O.Babalola and T.F Cootes. (2010). Using Parts and Geometry Models to initialise Active Appearance Models for Automated Segmentation of 3D Medical Images. Presented at Int. Symp. on Biomedical Imaging (ISBI). IEEE. eScholarID:82683

• 2010: S.Adeshina and T.F.Cootes. (2010). Constructing Part-based Models for Groupwise Registration. Presented at Int. Symp. on Biomedical Imaging (ISBI). IEEE. eScholarID:82680

• 2010: P. Tresadern, C.J.Taylor and T.F. Cootes. (2010). Additive Update Predictors in Active Appearance Models. Presented at British Machine Vision Conference. BMVA. eScholarID:84469

• 2009: P. Tresadern, H. Bhaskar, S. Adeshina, C. Taylor and T.F. Cootes. (2009). Combining Local and Global Shape Models for Deformable Object Matching. Presented at British Machine Vision Conference. BMVA. eScholarID:84470

• 2009: A.Caunce, D.Cristinacce, T.F.Cootes and C.J. Taylor. (2009). Locating Facial Features and Pose Estimation Using a 3D Shape Model. Presented at 5th International Symposium on Visual Computing. Springer. eScholarID:82676

• 2009: S.A. Adeshina, T.F. Cootes and J.E. Adams. (2009). Evaluating different structures for predicting skeletal maturity using statistical appearance models. Presented at Medical Image Understanding and Analysis. eScholarID:82679

• 2009: M.G.Roberts, T.F. Cootes, J.Adams. (2009). Segmentation of lumbar vertebrae using part-based graphs and active appearance models. Presented at MICCAI. London: Springer. eScholarID:82677

• 2008: Babalola, K, Patenaude, B, Aljabar, P, Schnabel, J, Kennedy, D, Crum, W, Smith, S, Cootes, TF, Jenkinson, M, Rueckert, D. (2008). Comparison and evaluation of segmentation techniques for subcortical structures in brain MRI. Presented at MICCAI. eScholarID:2d2571

• 2008: Babalola K, Cootes TF, Twining C, Petrovic V, Taylor C. (2008). 3D brain segmentation using active appearance models and local regressors. Springer-Verlag. eScholarID:2d2131

• 2008: Cristinacce D, Cootes TF. (2008). Facial Motion Analysis using Clustered Shortest Path Tree Registration. eScholarID:2d2194

• 2007: Petrovic VS, Cootes TF, A.M. Mills, Twining CJ, Taylor CJ. (2007). Automated Analysis of Deformable Structure in Groups of Images. eScholarID:2d2573

• 2007: Cristinacce D, Cootes TF. (2007). Boosted Regression Active Shape Models. eScholarID:2d2383

• 2007: Petrovic VS, Cootes TF, A.M. Mills, Taylor CJ. (2007). Simultaneous Segmentation of Groups of Medical Images. eScholarID:2d2437

• 2007: Roberts M, Cootes TF, Adams JE. (2007). Robust Active Appearance Models with Iteratively Rescaled Kernels. eScholarID:2d2311

• 2006: R. Schestowitz, C. Twining, T. Cootes, V. Petrovic, C. Taylor, W. Crum. (2006). Assessing the Accuracy of Non-Rigid Registration With and Without Ground Truth. Presented at IEEE International Symposium on Biomedical Imaging. eScholarID:29141

• 2006: Roberts M, Cootes TF, Adams JE. (2006). Improving the segmentaton of fractured vertebrae using dynamically sequenced active appearance models. Presented at MICCAI Joint Disease Workshop. eScholarID:2d2341

• 2006: K.O. Babalola, T.F. Cootes. (2006). Registering Richly Labelled 3D Images. Presented at IEEE International Symposium on Biomedical Imaging. eScholarID:29148

• 2006: Cristinacce D, Cootes TF. (2006). Facial Feature Detection and Tracking with Automatic Template Selection. eScholarID:2d2011

• 2006: P. Kittipanya-ngam and T.F. Cootes. (2006). The effect of texture representations on AAM performance. Presented at International Conference on Pattern Recognition. eScholarID:29053

• 2006: R. S. Schestowitz, C. J. Twining, V. S. Petrovic, T. Cootes, B. Crum and C. Taylor. (2006). Non-Rigid Registration Assessment Without Ground Truth. Presented at Medical Image Understanding and Analysis. eScholarID:29096

• 2006: C. J. Twining, T. F. Cootes, S. Marsland, V. S. Petrovic, R. S. Schestowitz and C.J. Taylor. (2006). Information-Theoretic Unification of Groupwise Non-Rigid Registration and Model Building. Presented at Medical Image Understanding and Analysis. eScholarID:29131

• 2006: Roberts M, Cootes TF, Adams JE. (2006). Automatic segmentaton of lumbar vertebrae on digitised radiographs using linked Active Appearance Models. Presented at Medical Image Understanding and Analysis. Manchester. eScholarID:2d2339

• 2006: K. O. Babalola and T. F. Cootes. (2006). Groupwise registration of richly labelled images. Presented at Medical Image Understanding and Analysis. eScholarID:29136

• 2006: V. S. Petrovic, T. F. Cootes, C. J. Twining and C. Taylor. (2006). Automatic Framework for Medical Image Registration, Segmentation and Modeling. Presented at Medical Image Understanding and Analysis. eScholarID:29073

• 2006: Cristinacce D, Cootes TF. (2006). Feature Detection and Tracking with Constrained Local Models. BMVA. eScholarID:2d2523

• 2006: Babalola K, Cootes TF, Patenaude B, Rao A, Jenkinson M. (2006). Comparing the similarity of statistical shape models using the Bhattacharya metric. eScholarID:2d2435

• 2006: T.F.Cootes and C.J.Taylor. (2006). An Algorithm for Tuning an Active Appearance Model to New Data. Presented at British Machine Vision Conference. BMVA Press. eScholarID:28996

• 2005: M.G. Roberts, T.F. Cootes and J.E. Adams. (2005). Vertebral shape: Automatic Measurement with dynamically sequenced active appearance models. Presented at MICCAI. eScholarID:30287

• 2005: T.F. Cootes, C.J. Twining, V.Petrovic, R.Schestowitz and C.J. Taylor. (2005). Groupwise Construction of Appearance Models using Piece-wise Affine Deformations. Presented at British Machine Vision Conference. eScholarID:30313

• 2004: Vladimir Petrovic, Cootes TF. (2004). Analysis of Features for Rigid Structure Vehicle Type Recognition. BMVA. eScholarID:2d2276

• 2004: Roberts M, Cootes TF, Adams JE. (2004). Vertebral Shape: Automatic measurement by MXA using overlapping statistical models of appearance. eScholarID:2d2277

• 2004: Cootes TF, Marsland SSR, Twining, Smith K, Taylor CJ. (2004). Groupwise Diffeomorphic Non-rigid Registration for Automatic Model Building. Springer. eScholarID:2d1923

• 2004: Cootes TF, Twining CJ, Taylor CJ. (2004). Diffeomorphic Statistical Shape Models. eScholarID:2d1913

• 2004: Cristinacce D, Cootes TF. (2004). A Comparison of Shape Constrained Facial Feature Detectors. eScholarID:2d1743

• 2004: Cristinacce D, Cootes TF, Scott II. (2004). A Multi-Stage Approach to Facial Feature Detection. eScholarID:2d2112

• 2004: Bettinger F, Cootes TF. (2004). A Model of Facial Behaviour. IEEE Computer Society Press. eScholarID:2d1799

• 2003: Roberts M, Cootes TF, Adams JE. (2003). Linking Sequences of Active Appearance Sub-Models via Constraints: an Application in Automated Vertebral Morphometry. eScholarID:2d1252

• 2003: Scott II, Cootes TF, Taylor CJ. (2003). Improving Appearance Model Matching Using Local Image Structure. eScholarID:2d1643

• 2003: Davies R, Twining CJ, Allen P D, Cootes TF, Taylor CJ. (2003). Shape Discrimination in the Hippocampus Using an MDL Model. eScholarID:2d1076

• 2003: Cristinacce D, Cootes TF. (2003). Facial Feature Detection using AdaBoost with Shape Constraints. eScholarID:2d1767

• 2002: Davies R, Twining CJ, Cootes TF, Taylor CJ. (2002). An information theoretic approach to statistical shape modelling. Springer. eScholarID:2d474

• 2002: Kang H, Cootes TF, Taylor CJ. (2002). A Comparison of Face Verification Algorithms using Appearance Models. eScholarID:2d876

• 2002: Cootes TF, Thacker NA, Taylor CJ. (2002). Automatic model selection by modelling the distribution of residuals. Springer. eScholarID:2d668

• 2002: Davies R, Cootes TF, Twining CJ, Taylor CJ. (2002). Constructing Optimal Statistical Shape Models for Automatic Image Segmentation. eScholarID:2d1363

• 2002: Taylor CJ, Cootes TF, Davies R, Twining CJ. (2002). Learning to Interpret Medical Images. eScholarID:2d955

• 2002: F Bettinger, Cootes TF, Taylor CJ. (2002). Modelling Facial Behaviours. eScholarID:2d1112

• 2002: Davies R, Twining CJ, Cootes TF, Waterton J.C, Taylor CJ. (2002). 3D Statistical Shape Models Using Direct Optimisation of Description Length. eScholarID:2d816

• 2002: Davies R, Twining CJ, Cootes TF, Waterton J.C, Taylor CJ. (2002). Constructing Optimal 3D Statistical Shape Models. eScholarID:2d953

• 2002: Davies R, Cootes TF, Twining CJ, Waterton J.C, Taylor CJ. (2002). 3D Statistical Shape Models for Automatic Segmentation of MR Images. eScholarID:2d951

• 2002: Cootes TF, Kittipanya-ngam P. (2002). Comparing Variations on the Active Appearance Model Algorithm. eScholarID:2d1079

• 2001: Rogers MD, Graham J, Cootes TF, Taylor CJ. (2001). Structured Point Distribution Models: Modelling Intermittently Present Features. BMVA. eScholarID:2d1354

• 2001: Cootes TF, Taylor CJ. (2001). Statistical models of appearance for medical image analysis and computer vision. SPIE. eScholarID:2d741

• 2001: Davies R, Cootes TF, Twining CJ, Taylor CJ. (2001). An information theoretic approach to statistical shape modelling. eScholarID:2d507

• 2001: Davies R, Cootes TF, Waterton J.C, Taylor CJ. (2001). An Efficient Method for Constructing Optimal Statistical Shape Models. eScholarID:2d987

• 2001: Costen NP, Cootes TF, Taylor CJ. (2001). Markov fields for recognition derived from facial texture error. eScholarID:2d704

• 2001: Davies R, Cootes TF, Twining CJ, Taylor CJ. (2001). An information theoretic approach to shape modelling. BMVA. eScholarID:2d457

• 2001: Davies R, Cootes TF, Taylor CJ. (2001). Building Optimal Statistical Shape Models Using a Minimum Description Length Approach. eScholarID:2d1361

• 2001: Davies R, Cootes TF, Taylor CJ. (2001). A minimum description length approach to statistical shape modelling. eScholarID:2d638

• 2001: Cootes TF, Taylor CJ. (2001). Constrained active appearance models. IEEE Computer Society Press. eScholarID:2d505

• 2000: Cootes TF, Taylor CJ. (2000). Combining elastic and statistical models of appearance variation. Springer. eScholarID:2d496

• 2000: Wheeler G-, Courtney PP, Cootes TF, Taylor CJ. (2000). Performance assessment of a face verification based access control system. eScholarID:2d703

• 2000: KN Walker, Cootes TF, Taylor CJ. (2000). Automatically building appearance models. eScholarID:2d701

• 2000: Cootes TF, GV Wheeler, KN Walker, Taylor CJ. (2000). Coupled-view active appearance models. BMVA. eScholarID:2d680

• 2000: Cootes TF, KN Walker, Taylor CJ. (2000). View-based active appearance models. eScholarID:2d679

• 2000: KN Walker, Cootes TF, Taylor CJ. (2000). Determining correspondences for statistical models of appearance. Springer. eScholarID:2d497

• 1999: GJ Edwards, Cootes TF, Taylor CJ. (1999). Advances in active appearance models. eScholarID:2d495

• 1999: Costen NP, Cootes TF, GJ Edwards, Taylor CJ. (1999). Automatic extraction of the face identity subspace. BMVA. eScholarID:2d494

• 1999: Cootes TF, GJ Edwards, Taylor CJ. (1999). Comparing active shape models with active appearance models. BMVA. eScholarID:2d675

• 1999: Cootes TF, Beeston CJ, GJ Edwards, Taylor CJ. (1999). A unified framework for atlas matching using active appearance models. eScholarID:2d677

• 1999: Costen NP, Cootes TF, GJ Edwards, Taylor CJ. (1999). Simultaneous extraction of functional face subspaces. IEEE Computer Society Press. eScholarID:2d738

• 1999: GJ Edwards, Cootes TF, Taylor CJ. (1999). Improving identification performance by integrating evidence from sequences. IEEE. eScholarID:2d740

• 1998: GJ Edwards, Taylor CJ, Cootes TF. (1998). Face recognition using the active appearance model. Springer. eScholarID:2d492

• 1998: GJ Edwards, Taylor CJ, Cootes TF. (1998). Interpreting face images using active appearance models. eScholarID:2d1324

• 1998: Cootes TF, GJ Edwards, Taylor CJ. (1998). Active appearance models. Springer. eScholarID:2d636

• 1998: GJ Edwards, Taylor CJ, Cootes TF. (1998). Learning to identify and track faces in image sequences. eScholarID:2d637

• 1998: Cootes TF, GJ Edwards, Taylor CJ. (1998). A comparative evaluation of active appearance model algorithms. BMVA. eScholarID:2d699

• 1998: KN Walker, Cootes TF, Taylor CJ. (1998). Locating salient facial features using image invariants. eScholarID:2d700

• 1998: KN Walker, Cootes TF, Taylor CJ. (1998). Locating salient object features. BMVA. eScholarID:2d674

• 1997: GJ Edwards, Taylor CJ, Cootes TF. (1997). Learning to identify and track faces in image sequences. BMVA. eScholarID:2d275

• 1997: Cootes TF, Taylor CJ. (1997). A mixture model for representing shape variation. BMVA. eScholarID:2d697

• 1997: Taylor CJ, KN Walker, Cootes TF. (1997). Correspondence using distinct points based on image invariants. BMVA. eScholarID:2d698

• 1996: GJ Edwards, Lanitis AA, Taylor CJ, Cootes TF. (1996). Statistical models of face images:Improving specificity. eScholarID:2d491

• 1996: Hill A-, Cootes TF, Taylor CJ. (1996). Least-squares estimation of absolute orientation with non-scalar weights. eScholarID:2d695

• 1996: Cootes TF, Taylor CJ. (1996). data driven refinement of active shape model search. eScholarID:2d635

• 1996: ED Di Mauro, Cootes TF, Taylor CJ, Lanitis AA. (1996). Active shape model search using paiwise geometric histograms. eScholarID:2d363

• 1996: GJ Edwards, Lanitis AA, Taylor CJ, Cootes TF. (1996). Modelling the variability in face images. IEEE Computer Society Press. eScholarID:2d364

• 1996: Cootes TF, Taylor CJ. (1996). Locting faces using statistical feature detectors. IEEE Computer Society Press. eScholarID:2d489

• 1995: Lanitis AA, Taylor CJ, Cootes TF, T Ahmad. (1995). Automatic interpretation of human faces and hand gestures using flexible models. eScholarID:2d478

• 1995: T Ahmad, Taylor CJ, Lanitis AA, Cootes TF. (1995). Tracking and recognising hand gestures using statistical shape models. BMVA. eScholarID:2d523

• 1995: PD Sozou, Sozou PD, Cootes TF, Taylor CJ, EC Di Mauro. (1995). Non-linear point distribution modelling using a multi layer perceptron. BMVA. eScholarID:2d360

• 1995: Cootes TF, Hill A-, Taylor CJ. (1995). Medical image interpretation using active shape models:Recent advances. eScholarID:2d1322

• 1995: Hill A-, Cootes TF, Taylor CJ. (1995). Active shape models and the shape approximation problem. BMVA. eScholarID:2d672

• 1995: Cootes TF, GJ Page, Jackson CB, Taylor CJ. (1995). Statistical grey-level models for object location and identification. BMVA. eScholarID:2d632

• 1995: Lanitis AA, Taylor CJ, Cootes TF. (1995). A unified approach to coding and interpreting face images. eScholarID:2d634

• 1995: Cootes TF, Taylor CJ. (1995). Active shape models:A review of recent work. eScholarID:2d1321

• 1995: Lanitis AA, Hill A-, Cootes TF, Taylor CJ. (1995). Locating facial features using genetic algorithms. eScholarID:2d526

• 1994: Cootes TF, Taylor CJ, Lanitis AA. (1994). Active shape models:Evaluation of a multi-resolution method for improving image search. BMVA. eScholarID:2d502

• 1994: Sozou PD, Cootes TF, Taylor CJ, EC Di Mauro. (1994). A non-linear generalisation of pdms using polynomial regression. BMVA. eScholarID:2d504

• 1994: Cootes TF, Taylor CJ. (1994). Modelling object appearance using the grey-level surface. BMVA. eScholarID:2d669

• 1994: JJ Hunter, Graham J, Cootes TF, Taylor CJ. (1994). User programmable visual inspection. BMVA. eScholarID:2d630

• 1994: AD Parker, Hill A-, Taylor CJ, Cootes TF, XY Jin, DG Gibson. (1994). Application of point distribution models to the automated analysis of echocardiograms. eScholarID:2d670

• 1994: Haslam JJH1, Taylor CJ, Cootes TF. (1994). A probalistic fitness measure for deformable template models. BMVA. eScholarID:2d1320

• 1994: Lanitis AA, Taylor CJ, Cootes TF. (1994). An automatic face identification system using flexible appearance models. BMVA. eScholarID:2d358

• 1994: Cootes TF, Taylor CJ. (1994). Combining point distribution models with shape models based on finite-element analysis. BMVA. eScholarID:2d500

• 1993: Graham J, Cootes TF, Cooper DH, Taylor CJ. (1993). Generic Methods for Object Modelling and Location in Complex Images. eScholarID:2d833

• 1993: Cootes TF, Hill A-, Taylor CJ, Haslam JJH1. (1993). The use of active shape models for locating structures in medical images. Springer-Verlag. eScholarID:2d627

• 1993: Cootes TF, Taylor CJ. (1993). Active shape model search using local grey-level models:A quantitative evaluation. BMVA. eScholarID:2d628

• 1993: Cootes TF, Taylor CJ, Lanitis AA, Cooper DH, Graham J. (1993). Building and using flexible models incorporating grey level information. eScholarID:2d981

• 1993: Lanitis AA, Taylor CJ, Cootes TF. (1993). A generic system for classifying variable objects using flexible template matching. BMVA. eScholarID:2d352

• 1992: Cootes TF, Taylor CJ, Cooper DH, Graham J. (1992). Training models of shape from sets of examples. Springer-Verlag. eScholarID:2d1358

• 1992: PE Undrill, GG Cameron, MJ Cookson, C Davies, NL Robinson, Hill, A-, Cootes, TF, Taylor, CJ, A Thornham, J Wysocki, HM Liddell, D Parkinson. (1992). Integrated presentation of 3D data derived from multi-sensor imagery and anatomical atlases using a parallel processing system. SPIE. eScholarID:2d274

• 1992: Hill A-, Taylor CJ, Cootes TF. (1992). Object recognition by flexible template matching using genetic algorithms. Springer-Verlag. eScholarID:2d625

• 1992: Hill A-, Cootes TF, Taylor CJ. (1992). A generic system for image interpretation using flexible templates. Springer-Verlag. eScholarID:2d272

• 1992: Cootes TF, Taylor CJ. (1992). Active shape models. Springer-Verlag. eScholarID:2d476

• 1991: Cootes TF, Cooper DDEC, Taylor CJ, Graham J. (1991). A trainable method of parametric shape description. Springer-Verlag. eScholarID:2d770

• 1991: Cooper DH, Taylor CJ, Graham J, Cootes TF. (1991). Locating overlapping flexible shapes using geometric constraints. Springer-Verlag. eScholarID:2d983

Timothy Cootes - Conference proceeding

• 2001: Tim Cootes and Chris Taylor. (2001). British Machine Vision Conference. Presented at British Machine Vision Conference. Manchester: BMVA Press. eScholarID:84565

Timothy Cootes - Book contribution

• 1999: R. Baldock, Cootes TF. (1999). Model-based methods in analysis of Biomedical images. Image Processing and Analysis:A Practical approach. (pp. 223-248). Oxford University Press. eScholarID:3d317

• 1994: Cootes TF, Taylor CJ, Cooper DH, Graham J, R.Baldock. (1994). Image search using trained flexible shape models. Advances in Applied Statistics:statistics and Images 2. (pp. 111-139). Carfax Publishing Company. eScholarID:3d191

Gina Cavan - Journal article

• 2012: Cavan, G. Kingston, R. (2012). Development of a climate change risk and vulnerability assessment tool for urban areas. International Journal of Disaster Resilience in the Built Environment, eScholarID:154897

• 2011: Kazmierczak, A. and Cavan, G. (2011). Surface water flooding risk to urban communities: Analysis of vulnerability, hazard and exposure. Landscape and Urban Planning, 103(2), 185-197. eScholarID:131642 | DOI:10.1016/j.landurbplan.2011.07.008

• 2010: Albertson, K. Aylen, J. Cavan, G. and McMorrow, J. (2010). Climate change and the future occurrence of moorland wildfires in the Peak District of the UK. Climate Research, 45(1), 105-118. eScholarID:95446 | DOI:10.3354/cr00926

• 2009: Albertson, K. Aylen, J. Cavan, G. and McMorrow, J. (2009). Forecasting the outbreak of moorland wildfires in the English Peak District. Journal of Environmental Management, 90(8), 2642-2651. eScholarID:87789 | DOI:10.1016/j.jenvman.2009.02.011

• 2008: McEvoy, D. Cavan, G. Handley, J. McMorrow, J. and Lindley, S. (2008). Changes to climate and visitor behaviour: implications for vulnerable landscapes in the North West region of England. Journal of Sustainable Tourism, 16(1), 101-121. eScholarID:87790 | DOI:10.2167/jost676.0

• 2006: Cavan, G. Handley, J. F. Aylen, J. Albertson, K. McMorrow, J. Lindley, S. and McEvoy, D. (2006). Climate change and the visitor economy in the uplands. International Journal of Biodiversity Science and Management, 2, eScholarID:87791

• 2005: Thornes, J. E. Cavan, G. and Chapman, L. (2005). XRWIS: the use of geomatics to predict winter road surface temperatures in Poland. Meteorological Applications, 12, 83-90. eScholarID:87794 | DOI:10.1017/S135048270500157X

Gina Cavan - Conference contribution

• 2011: McMorrow, J. and Cavan, G. (2011). Mapping the Spring 2011 fires. Presented at Wildfire 2011. Buxton, Derbyshire, UK.. eScholarID:131648

• 2011: Cavan, G. (2011). Costing footpath repair: a case study in the Peak District National Park, England. Presented at 3rd Conference of the International Association for Tourism Economics. Bournemouth University, UK. eScholarID:131644

• 2011: Cavan, G. Kazmierczak, A. (2011). Sustainable urban design under a changing climate: Oxford Road Corridor in Manchester, UK. Presented at The 5th International Conference of the International Forum on Urbanism (IFoU). National University of Singapore. eScholarID:119647

• 2011: Cavan, G. (2011). The challenge of retrofitting buildings to address climate change in Manchester, UK. Presented at Ecocity World Sommet. Montreal, Quebec, Canada. eScholarID:131645

• 2011: Cavan, G. and Kazmierczak, A. (2011). Realising a green scenario: Sustainable urban design under a changing climate in Manchester, UK. Presented at City weathers: meteorology and urban design 1950-2010. University of Manchester, UK.. eScholarID:131646

• 2010: Cavan, G. Kingston, R. Lindley, S. Kazmierczak, A. Gong, Y. (2010). Climate change and urban areas: Development of a climate change risk and vulnerability Assessment Tool. Presented at RICS Research Conference COBRA 2010. Paris-Dauphine University. eScholarID:119646

• 2007: Cavan, G. Lindley, S. Handley, J. (2007). Climate change, tourism and landscape impacts: A regional analysis. Presented at Climate change and tourism in Portugal: Potential impacts and adaptation measures. Lisbon, Portugal. eScholarID:119648

• 1900: Cavan, G. Climate change and the visitor economy: Upland case studies. Presented at Sustainable Uplands: Future Scenarios for People, Environment and Landscape. International Centre for the Uplands, Cumbria. eScholarID:87795

Gina Cavan - Book contribution

• 2009: McMorrow, J. Lindley, S. Aylen, J. Cavan, G, Albertson, K and Boys, D. (2009). Moorland wildfire risk, visitors and climate change: Patterns, prevention and policy. Drivers of Environmental Change in Uplands. London and New York: Routledge. eScholarID:87788

Gina Cavan - Technical report

• 2010: Cavan, Gina. (2010). Climate change projections for Greater Manchester. eScholarID:131647

• 2010: Cavan, G, J Carter, and A Kazmierczak. (2010). The future climate of North West England. EcoCities, University of Manchester. eScholarID:87799

• 2009: Cavan, G, J F Handley, L Howard, S Lindley, G Sherriff, and I White. (2009). Supermarket Adaptation to Future Environments. Sustainable Consumption Institute, University of Manchester. eScholarID:87798

• 2006: McEvoy, D, J F Handley, G Cavan, J Aylen, S Lindley, J McMorrow, and S Glynn. (2006). Climate Change and the Visitor Economy: the challenges and opportunities for England’s Northwest. Sustainability Northwest and UK Climate Impacts Programme. eScholarID:87793

Gina Cavan - Thesis

• 2009: Cavan, G. (2009). Climate Change Interactions with Tourism and the Landscape. University of Manchester. eScholarID:87792

Alex Chen - Journal article

• 2010: Chen, A (2010). Widget identification and modification for web 2.0 access technologies (WIMWAT). SIGACCESS Access. Comput, (96), 11-18. eScholarID:137225 | DOI:http://doi.acm.org/10.1145/1731849.1731851

Alex Chen - Technical report

• 2009: Chen, Alex Q. (2009). Identifying Web Widgets. eScholarID:137229

Tianyi Chen - Thesis (University required)

• 2011: Chen, Tianyi. (2011). Investigating Retrospective Interoperability between the Accessible and Mobile Webs with regard to User Input. Manchester, UK: The University of Manchester. eScholarID:127306

Joseph Dada - Journal article

• 2011: Joseph O. Dada and Pedro Mendes. (2011). Multi-scale Modelling and Simulation in Systems Biology. Integrative Biology, 3, 86-96. eScholarID:137117 | DOI:10.1039/c0ib00075b

• 2010: Dada JO, Spasic I, Paton NW, Mendes P. (2010). SBRML: a markup language for associating systems biology data with models. Bioinformatics, 26, 932-938. eScholarID:98762 | DOI:10.1093/bioinformatics/btq069

• 2010: Li, P, Dada, JO, Jameson, D, Spasic, I, Swainston, N, Carroll, K, Dunn, W, Khan, F, Messiha, HL, Simeonidis, E, Weichart, D, Winder, C, Broomhead, D, Goble, CA, Gaskell, SJ, Kell, DB, Westerhoff, HV, Mendes, P, Paton, NW. (2010). Systematic integration of experimental data and models in systems biology. BMC Bioinformatics, 11, eScholarID:98768

• 2009: Dada, JO, Mendes, P. (2009). Design and architecture of web services for simulation of biochemical systems. Lecture Notes in Computer Science, DILS 5647, 182-195. eScholarID:98770 | DOI:10.1007/978-3-642-02879-3_15

• 2009: Mendes, P, Hoops, S, Sahle, S, Gauges, R, Dada, J, Kummer, U. (2009). Computational Modeling of Biochemical Networks Using COPASI. Methods Mol. Biol, 500, 17-59. eScholarID:98775 | DOI:10.1007/978-1-59745-525-1_2

• 2006: Dada JOand McNab A. (2006). A Framework for Providing Username and Password Support to GridSite with Attribute based Authorization using Shibboleth and VOMS. Proceedings of UK e-Science All Hands Conference, Nottingham, UK, eScholarID:99165

• 2005: Dada JO, Kochs HD. (2005). XML-based Open Electricity Market Information Exchange Network using Object-Oriented Methods. International Journal of Computers and Applications, 27(3), 153-160. eScholarID:99168

Joseph Dada - Conference contribution

• 2004: Dada JO, Kochs HD, Petersen J. (2004). IskaWeb: A Web-Based Information System for the classification of Industrial Wastes. Presented at International Conference on Internet Computing. Las Vegas: CSREA Press. eScholarID:99169

• 2003: Kochs HD, Dada JO. (2003). Modelling Information Exchange Network for Open Electricity Market using Object-Oriented Development Concepts with UML. Presented at International Conference on Object-Oriented and Internet-based Technologies, Concepts, and Applications for a Networked World. Erfurt, Germany. eScholarID:99176

• 2001: Dada JO, Kochs HD. (2001). Information Exchange Framework for Deregulated Electricity Market using XML Technology. Presented at International Conference on Power and Energy Systems. Greece: ACTA Press. eScholarID:99177

• 2000: Dada JO, Kochs HD, Haubrich HJ. (2000). A Java-Based WWW -Transmission Schedule Information Booking System for German Open Electricity Market. Presented at International Conference on Power and Energy Systems. ACTA Press. eScholarID:99178

Jack Dongarra - Journal article

• 2009: Kurzak, J. & Dongarra, J (2009). QR factorization for the Cell Broadband Engine. Scientific Programming, 17(1-2), 31-42. eScholarID:1h80 | DOI:10.3233/SPR-2009-0268

• 2009: Kurzak, J., Alvaro, W. & Dongarra, J (2009). Optimizing matrix multiplication for a short-vector SIMD architecture - CELL processor. Parallel Computing, 35(3), 138-150. eScholarID:1h79 | DOI:10.1016/j.parco.2008.12.010

• 2009: Buttari, A., Langou, J., Kurzak, J. & Dongarra, J (2009). A class of parallel tiled linear algebra algorithms for multicore architectures. Parallel Computing, 35(1), 38-53. eScholarID:1h78 | DOI:10.1016/j.parco.2008.10.002

• 2009: Bosilca, G., Delmas, R., Dongarra, J. & Langou, J (2009). Algorithm-based fault tolerance applied to high performance computing. J. Parallel Distrib. Comput, 69(4), 410-416. eScholarID:1h77 | DOI:10.1016/j.jpdc.2008.12.002

• 2009: Gustavson, F., Wasniewski, J., Dongarra, J. & Langou, J (2009). Rectangular Full Packed Format for Cholesky's Algorithm: Factorization, Solution and Inversion. CoRR, abs/0901.1696, eScholarID:1h76

• 2008: Dongarra, J., Graybill, R., Harrod, W., Lucas, R., Lusk, E., Luszczek, P., McMahon, J., Snavely, A., Vetter, J., Yelick, K., Alam, S., Campbell, R., Carrington, L., Chen, T., Khalili, O., Meredith, J. & Tikir, M (2008). DARPA's HPCS Program- History, Models, Tools, Languages. Advances in Computers, 72, 1-100. eScholarID:1h82 | DOI:10.1016/S0065-2458(08)00001-6

• 2008: Baboulin, M., Buttari, A., Dongarra, J., Kurzak, J., Langou, J., Langou, J., Luszczek, P. & Tomov, S (2008). Accelerating Scientific Computations with Mixed Precision Algorithms. CoRR, abs/0808.2794, eScholarID:1h84 | DOI:10.1016/j.cpc.2008.11.005

• 2008: Chen, Z. & Dongarra, J (2008). Condition Numbers of Gaussian Random Matrices. CoRR, abs/0810.0800, eScholarID:1h85 | DOI:10.1137/040616413

• 2008: Bosilca, G., Delmas, R., Dongarra, J. & Langou, J (2008). Algorithmic Based Fault Tolerance Applied to High Performance Computing. CoRR, abs/0806.3121, eScholarID:1h83 | DOI:10.1016/j.jpdc.2008.12.002

• 2008: Chen, Z. & Dongarra, J (2008). Algorithm-Based Fault Tolerance for Fail-Stop Failures. IEEE Trans. Parallel Distrib. Syst, 19(12), 1628-1641. eScholarID:1h92 | DOI:10.1109/TPDS.2008.58

• 2008: Dongarra, J., Pineau, J., Robert, Y., Shi, Z. & Vivien, F (2008). Revisiting Matrix Product on Master-Worker Platforms. Int. J. Found. Comput. Sci, 19(6), 1317-1336. eScholarID:1h94 | DOI:10.1142/S0129054108006303

• 2008: Dongarra, J. & Haigh, T (2008). Biographies. IEEE Annals of the History of Computing, 30(2), 74-81. eScholarID:1h91 | DOI:10.1109/MAHC.2008.17

• 2008: Kurzak, J., Buttari, A. & Dongarra, J (2008). Solving Systems of Linear Equations on the CELL Processor Using Cholesky Factorization. IEEE Trans. Parallel Distrib. Syst, 19(9), 1175-1186. eScholarID:1h93 | DOI:10.1109/TPDS.2007.70813

• 2008: Kurzak, J., Buttari, A., Luszczek, P. & Dongarra, J (2008). The PlayStation 3 for high-performance scientific computing. Comput. Sci. Eng, 10(3), 84-87. eScholarID:1f237 | DOI:10.1109/MCSE.2008.85

• 2008: Dongarra, J., Golub, G., Grosse, E., Moler, C. & Moore, K (2008). Netlib and NA-Net: Building a scientific computing community. IEEE Ann. Hist. Comput, 30(2), 30-41. eScholarID:1f377 | DOI:10.1109/MAHC.2008.29

• 2008: Buttari, A., Dongarra, J., Kurzak, J., Luszczek, P. & Tomov, S (2008). Using Mixed Precision for Sparse Matrix Computations to Enhance the Performance while Achieving 64-bit Accuracy. ACM Trans. Math. Softw, 34(4), eScholarID:1h81 | DOI:10.1145/1377596.1377597

• 2008: Dongarra, J. & Tourancheau, B (2008). Special section: Cluster and computational grids for scientific computing. Future Generation Comp. Syst, 24(1), 30. eScholarID:1h87 | DOI:10.1016/j.future.2007.03.005

• 2008: Dimov, I., Dongarra, J., Madsen, K., Wasniewski, J. & Zlatev, Z (2008). Special section: Applications of distributed and grid computing. Future Generation Comp. Syst, 24(6), 582-584. eScholarID:1h89 | DOI:10.1016/j.future.2007.04.014

• 2008: Martino, B., Kranzlmüller, D. & Dongarra, J (2008). Special section: Grid computing and the message passing interface. Future Generation Comp. Syst, 24(2), 119-120. eScholarID:1h88 | DOI:10.1016/j.future.2007.06.002

• 2007: Langou, J., Chen, Z., Bosilca, G. & Dongarra, J (2007). Recovery Patterns for Iterative Methods in a Parallel Unstable Environment. SIAM J. Scientific Computing, 30(1), 102-116. eScholarID:1h103 | DOI:10.1137/040620394

• 2007: Wolf, F., Mohr, B., Dongarra, J. & Moore, S (2007). Automatic analysis of inefficiency patterns in parallel applications. Concurrency and Computation: Practice and Experience, 19(11), 1481-1496. eScholarID:1h100 | DOI:10.1002/cpe.1128

• 2007: Jeannot, E., Seymour, K., YarKhan, A. & Dongarra, J (2007). Improved Runtime and Transfer Time Prediction Mechanisms in a Network Enabled Servers Middleware. Parallel Processing Letters, 17(1), 47-59. eScholarID:1h102 | DOI:10.1142/S0129626407002867

• 2007: DONGARRA J; KURZAK J. (2007). Implementation of mixed precision in solving systems of linear equations on the Cell processor. Concurrency and Computation: Practice and Experience, 19(10), 1371-1385. eScholarID:1a10882 | DOI:10.1002/cpe.1164

• 2007: Pjesivac-Grbovic, J., Bosilca, G., Fagg, G., Angskun, T. & Dongarra, J (2007). MPI collective algorithm selection and quadtree encoding. Parallel Computing, 33(9), 613-623. eScholarID:1h101 | DOI:10.1016/j.parco.2007.06.005

• 2007: Pjesivac-Grbovic, J., Angskun, T., Bosilca, G., Fagg, G., Gabriel, E. & Dongarra, J (2007). Performance analysis of MPI collective operations. Cluster Computing, 10(2), 127-143. eScholarID:1h97 | DOI:10.1007/s10586-007-0012-0

• 2007: Wasniewski, J., Dongarra, J., Madsen, K., Toledo, S. & Zlatev, Z (2007). Editorial introduction to the special issue on computational linear algebra and sparse matrix computations. Appl. Algebra Eng. Commun. Comput, 18(3), 205-207. eScholarID:1h95 | DOI:10.1007/s00200-007-0033-1

• 2007: Buttari, A., Langou, J., Kurzak, J. & Dongarra, J (2007). A Class of Parallel Tiled Linear Algebra Algorithms for Multicore Architectures. CoRR, abs/0709.1272, eScholarID:1h98

• 2007: Wasniewski, J., Dongarra, J., Madsen, K., Toledo, S. & Zlatev, Z (2007). Editorial introduction to the special issue on computational linear algebra and sparse matrix computations. Appl. Algebra Eng. Commun. Comput, 18(3), 205-207. eScholarID:1h96 | DOI:10.1007/s00200-007-0033-1

• 2006: Dongarra, J., Bosilca, G., Chen, Z., Eijkhout, V., Fagg, G., Fuentes, E., Langou, J., Luszczek, P., Pjesivac-Grbovic, J., Seymour, K., You, H. & Vadhiyar, S (2006). Self-adapting numerical software (SANS) effort. IBM Journal of Research and Development, 50(2-3), 223-238. eScholarID:1h107 | DOI:10.1147/rd.502.0223

• 2006: Shi, Z. & Dongarra, J (2006). Scheduling workflow applications on processors with different capabilities. Future Generation Comp. Syst, 22(6), 665-675. eScholarID:1h106 | DOI:10.1016/j.future.2005.11.002

• 2006: Emad, N., Shahzadeh-Fazeli, S. & Dongarra, J (2006). An asynchronous algorithm on the NetSolve global computing system. Future Generation Comp. Syst, 22(3), 279-290. eScholarID:1h105 | DOI:10.1016/j.future.2005.10.003

• 2006: Dongarra, J., Pineau, J., Robert, Y., Shi, Z. & Vivien, F (2006). Revisiting Matrix Product on Master-Worker Platforms. CoRR, abs/cs/0612036, eScholarID:1h104

• 2005: DONGARRA J; DEMMEL J; EIJKHOUT V; FUENTES E; . (2005). Self adapting linear algebra algorithms and software. Proceedings of the IEEE, 93(2), 293-312. eScholarID:1a10883 | DOI:10.1109/JPROC.2004.840848

• 2005: Strohmaier, E., Dongarra, J., Meuer, H. & Simon, H (2005). Recent trends in the marketplace of high performance computing. Parallel Computing, 31(3-4), 261-273. eScholarID:1h113 | DOI:10.1016/j.parco.2005.02.001

• 2005: Eijkhout, V., Fuentes, E., Eidson, T. & Dongarra, J (2005). The Component Structure of a Self-Adapting Numerical Software System. International Journal of Parallel Programming, 33(2-3), 137-143. eScholarID:1h111 | DOI:10.1007/s10766-005-3577-3

• 2005: Parashar, M., Muralidhar, R., Lee, W., Arnold, D., Dongarra, J. & Wheeler, M (2005). Enabling interactive and collaborative oil reservoir simulations on the Grid. Concurrency - Practice and Experience, 17(11), 1387-1414. eScholarID:1h108 | DOI:10.1002/cpe.899

• 2005: Berman, F., Casanova, H., Chien, A., Cooper, K., Dail, H., Dasgupta, A., Deng, W., Dongarra, J., Johnsson, L., Kennedy, K., Koelbel, C., Liu, B., Liu, X., Mandal, A., Marin, G., Mazina, M., Mellor-Crummey, J., Mendes, C., Olugbile, A., Patel, M., Reed, D., Shi, Z., Sievert, O., Xia, H. & YarKhan, A (2005). New Grid Scheduling and Rescheduling Methods in the GrADS Project. International Journal of Parallel Programming, 33(2-3), 209-229. eScholarID:1h112 | DOI:10.1007/s10766-005-3584-4

• 2005: Vadhiyar, S. & Dongarra, J (2005). Self adaptivity in Grid computing. Concurrency - Practice and Experience, 17(2-4), 235-257. eScholarID:1h109 | DOI:10.1002/cpe.927

• 2005: YarKhan, A. & Dongarra, J (2005). Biological sequence alignment on the computational grid using the GrADS framework. Future Generation Comp. Syst, 21(6), 980-986. eScholarID:1h110 | DOI:10.1016/j.future.2005.02.002

• 2004: Dongarra, J (2004). Trends in High Performance Computing. Comput. J, 47(4), 399-403. eScholarID:1h114

• 2004: Vadhiyar, S. & Dongarra, J (2004). GrADSolve a grid-based RPC system for parallel computing with application-level scheduling. J. Parallel Distrib. Comput, 64(6), 774-783. eScholarID:1h116 | DOI:10.1016/j.jpdc.2003.10.003

• 2004: Dongarra, J., Madsen, K. & Wasniewski, J (2004). Selected numerical algorithms. Future Generation Comp. Syst, 20(3), 349-351. eScholarID:1h115 | DOI:10.1016/j.future.2003.07.001

• 2003: Vadhiyar, S. & Dongarra, J (2003). SRS: A Framework for Developing Malleable and Migratable Parallel Applications for Distributed Systems. Parallel Processing Letters, 13(2), 291-312. eScholarID:1h120 | DOI:10.1142/S0129626403001288

• 2003: Chen, Z., Dongarra, J., Luszczek, P. & Roche, K (2003). Self-adapting software for numerical linear algebra and LAPACK for clusters. Parallel Computing, 29(11-12), 1723-1743. eScholarID:1h119 | DOI:10.1016/j.parco.2003.05.014

• 2003: Seymour, K. & Dongarra, J (2003). Automatic translation of Fortran to JVM bytecode. Concurrency and Computation: Practice and Experience, 15(3-5), 207-222. eScholarID:1h117

• 2003: Dongarra, J. & Tourancheau, B (2003). Preface. Parallel Processing Letters, 13(2), 93. eScholarID:1h121 | DOI:10.1142/S0129626403001173

• 2003: Dongarra, J., Luszczek, P. & Petitet, A (2003). The LINPACK Benchmark: past, present and future. Concurrency and Computation: Practice and Experience, 15(9), 803-820. eScholarID:1h118 | DOI:10.1002/cpe.728

• 2002: Beck, M., Arnold, D., Bassi, A., Berman, F., Casanova, H., Dongarra, J., Moore, T., Obertelli, G., Plank, J., Swany, D., Vadhiyar, S. & Wolski, R (2002). Middleware for the use of storage in communication. Parallel Computing, 28(12), 1773-1787. eScholarID:1h127 | DOI:10.1016/S0167-8191(02)00185-0

• 2002: Arnold, D., Casanova, H. & Dongarra, J (2002). Innovations of the NetSolve Grid Computing System. Concurrency and Computation: Practice and Experience, 14(13-15), 1457-1479. eScholarID:1h124

• 2002: Moore, K. & Dongarra, J (2002). NetBuild: transparent cross-platform access to computational software libraries. Concurrency and Computation: Practice and Experience, 14(13-15), 1445-1456. eScholarID:1h123

• 2002: Moore, S., Baker, A., Dongarra, J., Halloy, C. & Ng, C (2002). Active Netlib: An Active Mathematical Software Collection for Inquiry-based Computational Science and Engineering Education. J. Digit. Inf, 2(4), eScholarID:1h126

• 2002: Fagg, G. & Dongarra, J (2002). HARNESS fault tolerant MPI design, usage and performance issues. Future Generation Comp. Syst, 18(8), 1127-1142. eScholarID:1h125 | DOI:10.1016/S0167-739X(02)00090-0

• 2002: Boisvert, R. & Dongarra, J (2002). Preface to the special issue on the basic linear algebra subprograms (BLAS). ACM Trans. Math. Softw, 28(2), 133-134. eScholarID:1h122

• 2001: Kennedy, K., Broom, B., Cooper, K., Dongarra, J., Fowler, R., Gannon, D., Johnsson, S., Mellor-Crummey, J. & Torczon, L (2001). Telescoping Languages: A Strategy for Automatic Generation of Scientific Problem-Solving Systems from Annotated Libraries. J. Parallel Distrib. Comput, 61(12), 1803-1826. eScholarID:1h128 | DOI:10.1006/jpdc.2001.1724

• 2001: Dongarra, J., Eijkhout, V. & Luszczek, P (2001). Recursive approach in sparse matrix LU factorization. Scientific Programming, 9(1), 51-60. eScholarID:1h134

• 2001: Arnold, D., Vadhiyar, S. & Dongarra, J (2001). On the Convergence of Computational and Data Grids. Parallel Processing Letters, 11(2/3), 187-202. eScholarID:1h133

• 2001: Dongarra, J., Eijkhout, V. & Vorst, H (2001). An iterative solver benchmark. Scientific Programming, 9(4), 223-231. eScholarID:1h135

• 2001: Fagg, G., Bukovsky, A. & Dongarra, J (2001). HARNESS and fault tolerant MPI. Parallel Computing, 27(11), 1479-1495. eScholarID:1h131

• 2001: Dongarra, J. & Tourancheau, B (2001). Preface: Clusters and Computational Grids for Scientific Computing. Parallel Processing Letters, 11(2/3), 185. eScholarID:1h132

• 2001: Dongarra, J., Shimasaki, M. & Tourancheau, B (2001). Clusters and computational grids for scientific computing - introduction. Parallel Computing, 27(11), 1401-1402. eScholarID:1h130

• 2001: DONGARRA J; BERMAN F; CHIEN A; COOPER K; . (2001). The GrADS Project: Software Support for High-Level Grid Application Development. International Journal of High Performance Computing Applications, 15(4), 327-344. eScholarID:1a10881 | DOI:10.1177/109434200101500401

• 2001: DONGARRA J; WHALEY R; PETITET A. (2001). Automated empirical optimizations of software and the ATLAS project. Parallel Computing, 27(1/2), 3-35. eScholarID:1a10880 | DOI:10.1016/S0167-8191(00)00087-9

• 2000: D'Azevedo, E. & Dongarra, J (2000). The design and implementation of the parallel out-of-core ScaLAPACK LU, QR, and Cholesky factorization routines. Concurrency - Practice and Experience, 12(15), 1481-1493. eScholarID:1h136

• 1999: Beck, M., Dongarra, J., Fagg, G., Geist, A., Gray, P., Kohl, J., Migliardi, M., Moore, K., Moore, T. & Papadopoulous, P (1999). HARNESS: a next generation distributed virtual machine. Future Generation Comp. Syst, 15(5-6), 571-582. eScholarID:1h139 | DOI:10.1016/S0167-739X(99)00010-2

• 1999: Plank, J., Casanova, H., Beck, M. & Dongarra, J (1999). Deploying fault tolerance and taks migration with NetSolve. Future Generation Comp. Syst, 15(5-6), 745-755. eScholarID:1h141 | DOI:10.1016/S0167-739X(99)00024-2

• 1999: Boulet, P., Dongarra, J., Rastello, F., Robert, Y. & Vivien, F (1999). Algorithmic Issues on Heterogeneous Computing Platforms. Parallel Processing Letters, 9(2), 197-213. eScholarID:1h146

• 1999: Calland, P., Dongarra, J. & Robert, Y (1999). Tiling on systems with communication/computation overlap. Concurrency - Practice and Experience, 11(3), 139-153. eScholarID:1h138

• 1999: Beck, M., Casanova, H., Dongarra, J., Moore, T., Plank, J., Berman, F. & Wolski, R (1999). Logistical quality of service in NetSolve. Computer Communications, 22(11), 1034-1044. eScholarID:1h137 | DOI:10.1016/S0140-3664(99)00074-2

• 1999: Petitet, A. & Dongarra, J (1999). Algorithmic Redistribution Methods for Block-Cyclic Decompositions. IEEE Trans. Parallel Distrib. Syst, 10(12), 1201-1216. eScholarID:1h142

• 1999: Boulet, P., Dongarra, J., Robert, Y. & Vivien, F (1999). Static tiling for heterogeneous computing platforms. Parallel Computing, 25(5), 547-568. eScholarID:1h145

• 1999: Doolin, D., Dongarra, J. & Seymour, K (1999). JLAPACK-compiling LAPACK Fortran to Java. Scientific Programming, 7(2), 111-138. eScholarID:1h147

• 1999: Fagg, G., Moore, K. & Dongarra, J (1999). Scalable networked information processing environment (SNIPE). Future Generation Comp. Syst, 15(5-6), 595-605. eScholarID:1h140 | DOI:10.1016/S0167-739X(99)00012-6

• 1999: Strohmaier, E., Dongarra, J., Meuer, H. & Simon, H (1999). The marketplace of high-performance computing. Parallel Computing, 25(13-14), 1517-1544. eScholarID:1h144

• 1999: Casanova, H., Thomason, M. & Dongarra, J (1999). Stochastic Performance Prediction for Iterative Algorithms in Distributed Environments. J. Parallel Distrib. Comput, 58(1), 68-91. eScholarID:1h143

• 1998: Boisvert, R., Dongarra, J., Pozo, R., Remington, K. & Stewart, G (1998). Developing numerical libraries in Java. CoRR, cs.MS/9809009, eScholarID:1h148

• 1998: Saltz, J., Sussman, A., Graham, S., Demmel, J., Baden, S. & Dongarra, J (1998). Programming Tools and Environments. Commun. ACM, 41(11), 64-73. eScholarID:1h149

• 1998: Desprez, F., Dongarra, J., Rastello, F. & Robert, Y (1998). Determining the Idle Time of a Tiling: New Results. J. Inf. Sci. Eng, 14(1), 167-190. eScholarID:1h152

• 1998: Desprez, F., Dongarra, J., Petitet, A., Randriamaro, C. & Robert, Y (1998). Scheduling Block-Cyclic Array Redistribution. IEEE Trans. Parallel Distrib. Syst, 9(2), 192-205. eScholarID:1h151

• 1998: Casanova, H. & Dongarra, J (1998). Using Agent-Based Software for Scientific Computing in the NetSolve System. Parallel Computing, 24(12-13), 1777-1790. eScholarID:1h153

• 1997: Blackford, L., Cleary, A., Petitet, A., Whaley, R., Demmel, J., Dhillon, I., Ren, H., Stanley, K., Dongarra, J. & Hammarling, S (1997). Practical Experience in the Numerical Dangers of Heterogeneous Computing. ACM Trans. Math. Softw, 23(2), 133-147. eScholarID:1h154

• 1997: Dongarra, J., Hammarling, S. & Walker, D (1997). Key Concepts for Parallel Out-of-Core LU Factorization. Parallel Computing, 23(1-2), 49-70. eScholarID:1h159

• 1997: Plank, J., Kim, Y. & Dongarra, J (1997). Fault-Tolerant Matrix Operations for Networks of Workstations Using Diskless Checkpointing. J. Parallel Distrib. Comput, 43(2), 125-138. eScholarID:1h157

• 1997: Casanova, H., Dongarra, J. & Doolin, D (1997). Java Access to Numerical Libraries. Concurrency - Practice and Experience, 9(11), 1279-1291. eScholarID:1h156

• 1997: Dongarra, J. & Dunigan, T (1997). Message-Passing Performance of Various Computers. Concurrency - Practice and Experience, 9(10), 915-926. eScholarID:1h155

• 1997: Dongarra, J. & Tourancheau, B (1997). Workshop on Environments and Tools for Parallel Scientific Computing. Parallel Computing, 23(1-2), 1-4. eScholarID:1h158

• 1996: Dongarra, J., Otto, S., Snir, M. & Walker, D (1996). A Message Passing Standard for MPP and Workstations. Commun. ACM, 39(7), 84-90. eScholarID:1h160

• 1996: Choi, J., Dongarra, J., Ostrouchov, S., Petitet, A., Walker, D. & Whaley, R (1996). Design and Implementation of the ScaLAPACK LU, QR, and Cholesky Factorization Routines. Scientific Programming, 5(3), 173-184. eScholarID:1h162

• 1996: Choi, J., Dongarra, J. & Walker, D (1996). PB-BLAS: a set of parallel block basic linear algebra subprograms. Concurrency - Practice and Experience, 8(7), 517-535. eScholarID:1h161

• 1995: Dongarra, J., Rowan, T. & Wade, R (1995). Software Distribution using XNETLIB. ACM Trans. Math. Softw, 21(1), 79-88. eScholarID:1h163

• 1995: Desprez, F., Dongarra, J. & Tourancheau, B (1995). Performance Study of LU Factorization with Low Communication Overhead on Multiprocessors. Parallel Processing Letters, 5, 157-169. eScholarID:1h166

• 1995: Choi, J., Dongarra, J. & Walker, D (1995). Parallel Matrix Transpose Algorithms on Distributed Memory Concurrent Computers. Parallel Computing, 21(9), 1387-1405. eScholarID:1h165

• 1995: Berry, M., Dongarra, J. & Kim, Y (1995). A Parallel Algorithm for the Reduction of a Nonsymmetric Matrix to Block Upper-Hessenberg Form. Parallel Computing, 21(8), 1189-1211. eScholarID:1h164

• 1994: Choi, J., Walker, D. & Dongarra, J (1994). Pumma: Parallel universal matrix multiplication algorithms on distributed memory concurrent computers. Concurrency - Practice and Experience, 6(7), 543-570. eScholarID:1h167 | DOI:10.1002/cpe.4330060702

• 1994: Sunderam, V., Geist, A., Dongarra, J. & Manchek, R (1994). The PVM Concurrent Computing System: Evolution, Experiences, and Trends. Parallel Computing, 20(4), 531-545. eScholarID:1h169

• 1994: Dongarra, J., Geijn, R. & Walker, D (1994). Scalability Issues Affecting the Design of a Dense Linear Algebra Library. J. Parallel Distrib. Comput, 22(3), 523-537. eScholarID:1h168

• 1994: Beguelin, A., Dongarra, J., Geist, G., Manchek, R. & Moore, K (1994). HeNCE: A Heterogeneous Network Computing Environment. Scientific Programming, 3(1), 49-60. eScholarID:1h170

• 1994: Berry, M., Dongarra, J., Larose, B. & Letsche, T (1994). PDS: A Performance Database Server. Scientific Programming, 3(2), 147-156. eScholarID:1h171

• 1993: Beguelin, A., Dongarra, J., Geist, A. & Sunderam, V (1993). Visualization and Debugging in a Heterogeneous Environment. IEEE Computer, 26(6), 88-95. eScholarID:1h172

• 1992: Dongarra, J. & Geijn, R (1992). Reduction to condensed form for the eigenvalue problem on distributed memory architectures. Parallel Computing, 18(9), 973-982. eScholarID:1h173

• 1991: Dongarra, J., Karp, A., Miura, K. & Simon, H (1991). 1990 Gordon Bell Prize Winners. IEEE Software, 8(3), 92-97. eScholarID:1h174

• 1991: Levine, D., Callahan, D. & Dongarra, J (1991). A comparative study of automatic vectorizing compilers. Parallel Computing, 17(10-11), 1223-1244. eScholarID:1h175

• 1991: Dongarra, J., Furtney, M., Reinhardt, S. & Russell, J (1991). Parallel loops - a test suite for parallelizing compilers: description and example results. Parallel Computing, 17(10-11), 1247-1255. eScholarID:1h176

• 1990: Dongarra, J., Croz, J., Hammarling, S. & Duff, I (1990). A set of level 3 basic linear algebra subprograms. ACM Trans. Math. Softw, 16(1), 1-17. eScholarID:1h177

• 1990: Dongarra, J., Brewer, O., Kohl, J. & Fineberg, S (1990). A Tool to Aid in the Design, Implementation, and Understanding of Matrix Algorithms for Parallel Processors. J. Parallel Distrib. Comput, 9(2), 185-202. eScholarID:1h180

• 1990: Dongarra, J., Cruz, J., Hammarling, S. & Duff, I (1990). Algorithm 679; a set of level 3 basic linear algebra subprograms: model implementation and test programs. ACM Trans. Math. Softw, 16(1), 18-28. eScholarID:1h178

• 1990: Dongarra, J., Karp, A. & Kuck, D (1990). 1989 Gordon Bell Prize. IEEE Software, 7(3), 100-104, 110. eScholarID:1h179

• 1989: Browne, J., Dongarra, J., Karp, A., Kennedy, K. & Kuck, D (1989). 1988 Gordon Bell Prize. IEEE Software, 6(3), 78-85. eScholarID:1h181

• 1988: Brewer, O., Dongarra, J. & Sorensen, D (1988). Tools to aid in the analysis of memory access patterns for FORTRAN programs. Parallel Computing, 9(1), 25-35. eScholarID:1h183

• 1988: Dongarra, J., Sorensen, D., Connolly, K. & Patterson, J (1988). Programming methodology and performance issues for advanced computer architectures. Parallel Computing, 8(1-3), 41-58. eScholarID:1h182

• 1987: Dongarra, J. & Johnsson, S (1987). Solving banded systems on a parallel processor. Parallel Computing, 5(1-2), 219-246. eScholarID:1h186 | DOI:10.1016/0167-8191(87)90020-2

• 1987: Dongarra, J. & Grosse, E (1987). Distribution of Mathematical Software via Electronic Mail. Commun. ACM, 30(5), 403-407. eScholarID:1h184

• 1987: Dongarra, J. & Sorensen, D (1987). A portable environment for developing parallel FORTRAN programs. Parallel Computing, 5(1-2), 175-186. eScholarID:1h185 | DOI:10.1016/0167-8191(87)90016-0

• 1986: Dongarra, J., Sameh, A. & Sorensen, D (1986). Implementation of some concurrent algorithms for matrix factorization. Parallel Computing, 3(1), 25-34. eScholarID:1h187 | DOI:10.1016/0167-8191(86)90004-9

• 1979: Dongarra, J. & Hinds, A (1979). Unrolling Loops in FORTRAN. Softw., Pract. Exper, 9(3), 219-226. eScholarID:1h188

Jack Dongarra - Conference contribution

• 2009: Song, F., Dongarra, J. & Moore, S (2009). A Scalable Non-blocking Multicast Scheme for Distributed DAG Scheduling. Presented at Computational Science - ICCS 2009, 9th International Conference, Baton Rouge, LA, USA, May 25-27, 2009, Proceedings, Part I. Springer. eScholarID:2h133 | DOI:10.1007/978-3-642-01970-8_20

• 2009: Jagode, H., Dongarra, J., Alam, S., Vetter, J., Spear, W. & Malony, A (2009). A Holistic Approach for Performance Measurement and Analysis for Petascale Applications. Presented at Computational Science - ICCS 2009, 9th International Conference, Baton Rouge, LA, USA, May 25-27, 2009, Proceedings, Part II. Springer. eScholarID:2h135 | DOI:10.1007/978-3-642-01973-9_77

• 2009: Hoefler, T., Lumsdaine, A. & Dongarra, J (2009). Towards Efficient MapReduce Using MPI. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 16th European PVM/MPI Users' Group Meeting, Espoo, Finland, September 7-10, 2009. Proceedings. Springer. eScholarID:2h136 | DOI:10.1007/978-3-642-03770-2_30

• 2009: Li, Y., Dongarra, J. & Tomov, S (2009). A Note on Auto-tuning GEMM for GPUs. Presented at Computational Science - ICCS 2009, 9th International Conference, Baton Rouge, LA, USA, May 25-27, 2009, Proceedings, Part I. Springer. eScholarID:2h134 | DOI:10.1007/978-3-642-01970-8_89

• 2008: Seymour, K., You, H. & Dongarra, J (2008). A comparison of search heuristics for empirical code optimization. Presented at Proceedings of the 2008 IEEE International Conference on Cluster Computing, 29 September - 1 October 2008, Tsukuba, Japan. IEEE. eScholarID:2h137 | DOI:10.1109/CLUSTR.2008.4663803

• 2008: Youseff, L., Seymour, K., You, H., Dongarra, J. & Wolski, R (2008). The impact of paravirtualized memory hierarchy on linear algebra computational kernels and software. Presented at Proceedings of the 17th International Symposium on High-Performance Distributed Computing (HPDC-17 2008), 23-27 June 2008, Boston, MA, USA. ACM. eScholarID:2h139

• 2008: Chen, Z. & Dongarra, J (2008). A Scalable Checkpoint Encoding Algorithm for Diskless Checkpointing. Presented at 11th IEEE High Assurance Systems Engineering Symposium, HASE 2008, Nanjing, China, December 3 - 5, 2008. IEEE Computer Society. eScholarID:2h138 | DOI:10.1109/HASE.2008.13

• 2008: Dongarra, J (2008). An Overview of High Performance Computing and Challenges for the Future. Presented at High Performance Computing for Computational Science - VECPAR 2008, 8th International Conference, Toulouse, France, June 24-27, 2008. Revised Selected Papers. Springer. eScholarID:2h142 | DOI:10.1007/978-3-540-92859-1_1

• 2008: Dongarra, J., Pineau, J., Robert, Y. & Vivien, F (2008). Matrix product on heterogeneous master-worker platforms. Presented at Proceedings of the 13th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP 2008, Salt Lake City, UT, USA, February 20-23, 2008. ACM. eScholarID:2h141

• 2008: Alvaro, W., Kurzak, J. & Dongarra, J (2008). Fast and Small Short Vector SIMD Matrix Multiplication Kernels for the Synergistic Processing Element of the CELL Processor. Presented at Computational Science - ICCS 2008, 8th International Conference, Kraków, Poland, June 23-25, 2008, Proceedings, Part I. Springer. eScholarID:2h140 | DOI:10.1007/978-3-540-69384-0_98

• 2007: Angskun, T., Bosilca, G. & Dongarra, J (2007). Binomial Graph: A Scalable and Fault-Tolerant Logical Network Topology. Presented at Parallel and Distributed Processing and Applications, 5th International Symposium, ISPA 2007, Niagara Falls, Canada, August 29-31, 2007, Proceedings. Springer. eScholarID:2h150 | DOI:10.1007/978-3-540-74742-0_43

• 2007: Fürlinger, K., Gerndt, M. & Dongarra, J (2007). Scalability Analysis of the SPEC OpenMP Benchmarks on Large-Scale Shared Memory Multiprocessors. Presented at Computational Science - ICCS 2007, 7th International Conference, Beijing, China, May 27 - 30, 2007, Proceedings, Part II. Springer. eScholarID:2h151 | DOI:10.1007/978-3-540-72586-2_115

• 2007: Dongarra, J., Pineau, J., Robert, Y., Shi, Z. & Vivien, F (2007). Revisiting Matrix Product on Master-Worker Platforms. Presented at 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA. IEEE. eScholarID:2h148 | DOI:10.1109/IPDPS.2007.370466

• 2007: Song, F., Moore, S. & Dongarra, J (2007). Feedback-directed thread scheduling with memory considerations. Presented at Proceedings of the 16th International Symposium on High-Performance Distributed Computing (HPDC-16 2007), 25-29 June 2007, Monterey, California, USA. ACM. eScholarID:2h146

• 2007: Song, F., Moore, S. & Dongarra, J (2007). L2 Cache Modeling for Scientific Applications on Chip Multi-Processors. Presented at 2007 International Conference on Parallel Processing (ICPP 2007), September 10-14, 2007, Xi-An, China. IEEE Computer Society. eScholarID:2h147

• 2007: Fürlinger, K., Gerndt, M. & Dongarra, J (2007). On Using Incremental Profiling for the Performance Analysis of Shared Memory Parallel Applications. Presented at Euro-Par 2007, Parallel Processing, 13th International Euro-Par Conference, Rennes, France, August 28-31, 2007, Proceedings. Springer. eScholarID:2h145 | DOI:10.1007/978-3-540-74466-5_8

• 2007: Pjesivac-Grbovic, J., Bosilca, G., Fagg, G., Angskun, T. & Dongarra, J (2007). Decision Trees and MPI Collective Algorithm Selection Problem. Presented at Euro-Par 2007, Parallel Processing, 13th International Euro-Par Conference, Rennes, France, August 28-31, 2007, Proceedings. Springer. eScholarID:2h144 | DOI:10.1007/978-3-540-74466-5_13

• 2007: Angskun, T., Bosilca, G., Fagg, G., Pjesivac-Grbovic, J. & Dongarra, J (2007). Reliability Analysis of Self-Healing Network using Discrete-Event Simulation. Presented at Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2007), 14-17 May 2007, Rio de Janeiro, Brazil. IEEE Computer Society. eScholarID:2h143 | DOI:10.1109/CCGRID.2007.95

• 2007: Chen, Z., Yang, M., III, G. & Dongarra, J (2007). Self Adaptive Application Level Fault Tolerance for Parallel and Distributed Computing. Presented at 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA. IEEE. eScholarID:2h149 | DOI:10.1109/IPDPS.2007.370604

• 2007: Dongarra, J., Jeannot, E., Saule, E. & Shi, Z (2007). Bi-objective scheduling algorithms for optimizing makespan and reliability on heterogeneous systems. Presented at SPAA 2007: Proceedings of the 19th Annual ACM Symposium on Parallel Algorithms and Architectures, San Diego, California, USA, June 9-11, 2007. ACM. eScholarID:2h156

• 2007: Bouteiller, A., Bosilca, G. & Dongarra, J (2007). Retrospect: Deterministic Replay of MPI Applications for Interactive Distributed Debugging. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 14th European PVM/MPI User's Group Meeting, Paris, France, September 30 - October 3, 2007, Proceedings. Springer. eScholarID:2h155 | DOI:10.1007/978-3-540-75416-9_41

• 2007: Angskun, T., Bosilca, G. & Dongarra, J (2007). Self-healing in Binomial Graph Networks. Presented at On the Move to Meaningful Internet Systems 2007: OTM 2007 Workshops, OTM Confederated International Workshops and Posters, AWeSOMe, CAMS, OTM Academy Doctoral Consortium, MONET, OnToContent, ORM, PerSys, PPN, RDDS, SSWS, and SWWS 2007, Vilamoura, Portugal, November 25-30, 2007, Proceedings, Part II. Springer. eScholarID:2h152 | DOI:10.1007/978-3-540-76890-6_30

• 2007: Angskun, T., Bosilca, G., Zanden, B. & Dongarra, J (2007). Optimal Routing in Binomial Graph Networks. Presented at Eighth International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT 2007), 3-6 December 2007, Adelaide, Australia. IEEE Computer Society. eScholarID:2h153

• 2007: Buttari, A., Langou, J., Kurzak, J. & Dongarra, J (2007). Parallel Tiled QR Factorization for Multicore Architectures. Presented at Parallel Processing and Applied Mathematics, 7th International Conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007, Revised Selected Papers. Springer. eScholarID:2h154 | DOI:10.1007/978-3-540-68111-3_67

• 2006: Langou, J., Langou, J., Luszczek, P., Kurzak, J., Buttari, A. & Dongarra, J (2006). Tools and techniques for performance - Exploiting the performance of 32 bit floating point arithmetic in obtaining 64 bit accuracy (revisiting iterative refinement for linear systems). Presented at Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, November 11-17, 2006, Tampa, FL, USA. ACM Press. eScholarID:2h168

• 2006: Tang, Y., Fagg, G. & Dongarra, J (2006). Proposal of MPI Operation Level Checkpoint/Rollback and One Implementation. Presented at Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2006), 16-19 May 2006, Singapore. IEEE Computer Society. eScholarID:2h157

• 2006: Buttari, A., Dongarra, J., Kurzak, J., Langou, J., Luszczek, P. & Tomov, S (2006). The Impact of Multicore on Math Software. Presented at Applied Parallel Computing. State of the Art in Scientific Computing, 8th International Workshop, PARA 2006, Umeå, Sweden, June 18-21, 2006, Revised Selected Papers. Springer. eScholarID:2h162 | DOI:10.1007/978-3-540-75755-9_1

• 2006: Shi, Z., Jeannot, E. & Dongarra, J (2006). Robust task scheduling in non-deterministic heterogeneous computing systems. Presented at Proceedings of the 2006 IEEE International Conference on Cluster Computing, September 25-28, 2006, Barcelona, Spain. IEEE. eScholarID:2h158 | DOI:10.1109/CLUSTR.2006.311868

• 2006: Chen, Z. & Dongarra, J (2006). Algorithm-based checkpoint-free fault tolerance for parallel matrix computations on volatile resources. Presented at 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece. IEEE. eScholarID:2h160 | DOI:10.1109/IPDPS.2006.1639333

• 2006: Kurzak, J. & Dongarra, J (2006). Implementing Linear Algebra Routines on Multi-core Processors with Pipelining and a Look Ahead. Presented at Applied Parallel Computing. State of the Art in Scientific Computing, 8th International Workshop, PARA 2006, Umeå, Sweden, June 18-21, 2006, Revised Selected Papers. Springer. eScholarID:2h164 | DOI:10.1007/978-3-540-75755-9_18

• 2006: Demmel, J., Dongarra, J., Parlett, B., Kahan, W., Gu, M., Bindel, D., Hida, Y., Li, X., Marques, O., Riedy, E., Vömel, C., Langou, J., Luszczek, P., Kurzak, J., Buttari, A., Langou, J. & Tomov, S (2006). Prospectus for the Next LAPACK and ScaLAPACK Libraries. Presented at Applied Parallel Computing. State of the Art in Scientific Computing, 8th International Workshop, PARA 2006, Umeå, Sweden, June 18-21, 2006, Revised Selected Papers. Springer. eScholarID:2h163 | DOI:10.1007/978-3-540-75755-9_2

• 2006: Dongarra, J (2006). The Impact of Multicore on Math Software and Exploiting Single Precision Computing to Obtain Double Precision Results. Presented at 2006 International Conference on Parallel Processing (ICPP 2006), 14-18 August 2006, Columbus, Ohio, USA. IEEE Computer Society. eScholarID:2h159

• 2006: Dongarra, J (2006). The Impact of Multicore on Math Software and Exploiting Single Precision Computing to Obtain Double Precision Results. Presented at Parallel and Distributed Processing and Applications, 4th International Symposium, ISPA 2006, Sorrento, Italy, December 4-6, 2006, Proceedings. Springer. eScholarID:2h161 | DOI:10.1007/11946441_2

• 2006: Keller, R., Bosilca, G., Fagg, G., Resch, M. & Dongarra, J (2006). Implementation and Usage of the PERUSE-Interface in Open MPI. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 13th European PVM/MPI User's Group Meeting, Bonn, Germany, September 17-20, 2006, Proceedings. Springer. eScholarID:2h166 | DOI:10.1007/11846802_48

• 2006: Angskun, T., Fagg, G., Bosilca, G., Pjesivac-Grbovic, J. & Dongarra, J (2006). Scalable Fault Tolerant Protocol for Parallel Runtime Environments. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 13th European PVM/MPI User's Group Meeting, Bonn, Germany, September 17-20, 2006, Proceedings. Springer. eScholarID:2h165 | DOI:10.1007/11846802_25

• 2006: Luszczek, P., Bailey, D., Dongarra, J., Kepner, J., Lucas, R., Rabenseifner, R. & Takahashi, D (2006). S12 - The HPC Challenge (HPCC) benchmark suite. Presented at Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, November 11-17, 2006, Tampa, FL, USA. ACM Press. eScholarID:2h170

• 2006: Pjesivac-Grbovic, J., Fagg, G., Angskun, T., Bosilca, G. & Dongarra, J (2006). MPI Collective Algorithm Selection and Quadtree Encoding. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 13th European PVM/MPI User's Group Meeting, Bonn, Germany, September 17-20, 2006, Proceedings. Springer. eScholarID:2h167 | DOI:10.1007/11846802_14

• 2006: Dongarra, J. & Kepner, J (2006). HPC challenge - The 2006 HPC challenge awards. Presented at Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, November 11-17, 2006, Tampa, FL, USA. ACM Press. eScholarID:2h171

• 2006: Buttari, A., Kurzak, J. & Dongarra, J (2006). Poster reception - Targeting multi-core architectures for linear algebra applications. Presented at Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, November 11-17, 2006, Tampa, FL, USA. ACM Press. eScholarID:2h169

• 2005: Cuenca, J., García, L., Giménez, D. & Dongarra, J (2005). Processes Distribution of Homogeneous Parallel Linear Algebra Routines on Heterogeneous Clusters. Presented at 2005 IEEE International Conference on Cluster Computing (CLUSTER 2005), September 26 - 30, 2005, Boston, Massachusetts, USA. IEEE. eScholarID:2h172 | DOI:10.1109/CLUSTR.2005.347021

• 2005: Tomov, S., Langou, J., Canning, A., Wang, L. & Dongarra, J (2005). Comparison of Nonlinear Conjugate-Gradient Methods for Computing the Electronic Properties of Nanostructure Architectures. Presented at Computational Science - ICCS 2005, 5th International Conference, Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part III. Springer. eScholarID:2h177 | DOI:10.1007/11428862_44

• 2005: Langou, J., Bosilca, G., Fagg, G. & Dongarra, J (2005). Hash Functions for Datatype Signatures in MPI. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 12th European PVM/MPI Users' Group Meeting, Sorrento, Italy, September 18-21, 2005, Proceedings. Springer. eScholarID:2h182 | DOI:10.1007/11557265_14

• 2005: Fagg, G., Angskun, T., Bosilca, G., Pjesivac-Grbovic, J. & Dongarra, J (2005). Scalable Fault Tolerant MPI: Extending the Recovery Algorithm. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 12th European PVM/MPI Users' Group Meeting, Sorrento, Italy, September 18-21, 2005, Proceedings. Springer. eScholarID:2h181 | DOI:10.1007/11557265_13

• 2005: Moore, S., Wolf, F., Dongarra, J., Shende, S., Malony, A. & Mohr, B (2005). A Scalable Approach to MPI Application Performance Analysis. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 12th European PVM/MPI Users' Group Meeting, Sorrento, Italy, September 18-21, 2005, Proceedings. Springer. eScholarID:2h180 | DOI:10.1007/11557265_41

• 2005: Chen, Z., Fagg, G., Gabriel, E., Langou, J., Angskun, T., Bosilca, G. & Dongarra, J (2005). Fault tolerant high performance computing by a coding approach. Presented at Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP 2005, June 15-17, 2005, Chicago, IL, USA. ACM. eScholarID:2h179

• 2005: Bhatia, N., Song, F., Wolf, F., Dongarra, J., Mohr, B. & Moore, S (2005). Automatic Experimental Analysis of Communication Patterns in Virtual Topologies. Presented at 34th International Conference on Parallel Processing (ICPP 2005), 14-17 June 2005, Oslo, Norway. IEEE Computer Society. eScholarID:2h173 | DOI:10.1109/ICPP.2005.21

• 2005: Beck, M., Dongarra, J. & Plank, J (2005). NetSolve/D: A Massively Parallel Grid Execution System for Scalable Data Intensive Collaboration. Presented at 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), CD-ROM / Abstracts Proceedings, 4-8 April 2005, Denver, CA, USA. IEEE Computer Society. eScholarID:2h174

• 2005: Pjesivac-Grbovic, J., Angskun, T., Bosilca, G., Fagg, G., Gabriel, E. & Dongarra, J (2005). Performance Analysis of MPI Collective Operations. Presented at 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), CD-ROM / Abstracts Proceedings, 4-8 April 2005, Denver, CA, USA. IEEE Computer Society. eScholarID:2h175

• 2005: Chen, Z. & Dongarra, J (2005). Numerically Stable Real Number Codes Based on Random Matrices. Presented at Computational Science - ICCS 2005, 5th International Conference, Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part I. Springer. eScholarID:2h176 | DOI:10.1007/11428831_15

• 2005: Shahzadeh-Fazeli, S., Emad, N. & Dongarra, J (2005). Eigenvalue Computation with NetSolve Global Computing System. Presented at Large-Scale Scientific Computing, 5th International Conference, LSSC 2005, Sozopol, Bulgaria, June 6-10, 2005, Revised Papers. Springer. eScholarID:2h178 | DOI:10.1007/11666806_51

• 2004: Dongarra, J (2004). Fault Tolerance in Message Passing and in Action. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 11th European PVM/MPI Users' Group Meeting, Budapest, Hungary, September 19-22, 2004, Proceedings. Springer. eScholarID:2h195

• 2004: Gabriel, E., Fagg, G., Bosilca, G., Angskun, T., Dongarra, J., Squyres, J., Sahay, V., Kambadur, P., Barrett, B., Lumsdaine, A., Castain, R., Daniel, D., Graham, R. & Woodall, T (2004). Open MPI: Goals, Concept, and Design of a Next Generation MPI Implementation. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 11th European PVM/MPI Users' Group Meeting, Budapest, Hungary, September 19-22, 2004, Proceedings. Springer. eScholarID:2h196

• 2004: Song, F., Wolf, F., Bhatia, N., Dongarra, J. & Moore, S (2004). An Algebra for Cross-Experiment Performance Analysis. Presented at 33rd International Conference on Parallel Processing (ICPP 2004), 15-18 August 2004, Montreal, Quebec, Canada. IEEE Computer Society. eScholarID:2h186

• 2004: Yi, Q., Kennedy, K., You, H., Seymour, K. & Dongarra, J (2004). Automatic blocking of QR and LU factorizations for locality. Presented at Proceedings of the 2004 workshop on Memory System Performance, Washington, DC, USA, June 8, 2004. ACM. eScholarID:2h192

• 2004: Chen, Z., Dongarra, J., Luszczek, P. & Roche, K (2004). The LAPACK for Clusters Project: An Example of Self Adapting Numerical Software. eScholarID:2h185

• 2004: Luszczek, P. & Dongarra, J (2004). Design of Interactive Environment for Numerically Intensive Parallel Linear Algebra Calculations. Presented at Computational Science - ICCS 2004, 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part IV. Springer. eScholarID:2h190

• 2004: Dongarra, J (2004). Present and Future Supercomputer Architectures. Presented at Parallel and Distributed Processing and Applications, Second InternationalSymposium, ISPA 2004, Hong Kong, China, December 13-15, 2004, Proceedings. Springer. eScholarID:2h189

• 2004: Wolf, F., Mohr, B., Dongarra, J. & Moore, S (2004). Efficient Pattern Search in Large Traces Through Successive Refinement. Presented at Euro-Par 2004 Parallel Processing, 10th International Euro-Par Conference, Pisa, Italy, August 31-September 3, 2004, Proceedings. Springer. eScholarID:2h183

• 2004: Dongarra, J (2004). High Performance Computing Trends, Supercomputers, Clusters and Grids. Presented at Grid and Cooperative Computing - GCC 2004: Third International Conference, Wuhan, China, October 21-24, 2004. Proceedings. Springer. eScholarID:2h184

• 2004: Eidson, T., Eijkhout, V. & Dongarra, J (2004). Improvements in the Efficient Composition of Applications Built Using a Component-Based Programming Environment. Presented at 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), CD-ROM / Abstracts Proceedings, 26-30 April 2004, Santa Fe, New Mexico, USA. IEEE Computer Society. eScholarID:2h187

• 2004: Woodall, T., Graham, R., Castain, R., Daniel, D., Sukalski, M., Fagg, G., Gabriel, E., Bosilca, G., Angskun, T., Dongarra, J., Squyres, J., Sahay, V., Kambadur, P., Barrett, B. & Lumsdaine, A (2004). TEG: A High-Performance, Scalable, Multi-network Point-to-Point Communications Methodology. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 11th European PVM/MPI Users' Group Meeting, Budapest, Hungary, September 19-22, 2004, Proceedings. Springer. eScholarID:2h194

• 2004: Cooper, K., Dasgupta, A., Kennedy, K., Koelbel, C., Mandal, A., Marin, G., Mazina, M., Mellor-Crummey, J., Berman, F., Casanova, H., Chien, A., Dail, H., Liu, X., Olugbile, A., Sievert, O., Xia, H., Johnsson, L., Liu, B., Patel, M., Reed, D., Deng, W., Mendes, C., Shi, Z., YarKhan, A. & Dongarra, J (2004). New Grid Scheduling and Rescheduling Methods in the GrADS Project. Presented at 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), CD-ROM / Abstracts Proceedings, 26-30 April 2004, Santa Fe, New Mexico, USA. IEEE Computer Society. eScholarID:2h188

• 2004: Dongarra, J., Moore, S., Mucci, P., Seymour, K. & You, H (2004). Accurate Cache and TLB Characterization Using Hardware Counters. Presented at Computational Science - ICCS 2004, 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part III. Springer. eScholarID:2h191

• 2004: Woodall, T., Graham, R., Castain, R., Daniel, D., Sukalski, M., Fagg, G., Gabriel, E., Bosilca, G., Angskun, T., Dongarra, J., Squyres, J., Sahay, V., Kambadur, P., Barrett, B. & Lumsdaine, A (2004). Open MPI's TEG Point-to-Point Communications Methodology: Comparison to Existing Implementations. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 11th European PVM/MPI Users' Group Meeting, Budapest, Hungary, September 19-22, 2004, Proceedings. Springer. eScholarID:2h193

• 2003: Cuenca, J., Giménez, D., González, J., Dongarra, J. & Roche, K (2003). Automatic Optimisation of Parallel Linear Algebra Routines in Systems with Variable Load. Presented at 11th Euromicro Workshop on Parallel, Distributed and Network-Based Processing (PDP 2003), 5-7 February 2003, Genova, Italy. IEEE Computer Society. eScholarID:2h208

• 2003: Dongarra, J., Malony, A., Moore, S., Mucci, P. & Shende, S (2003). Performance Instrumentation and Measurement for Terascale Systems. Presented at Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part IV. Springer. eScholarID:2h205

• 2003: Gabriel, E., Fagg, G. & Dongarra, J (2003). Evaluating the Performance of MPI-2 Dynamic Communicators and One-Sided Communication. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface,10th European PVM/MPI Users' Group Meeting, Venice, Italy, September 29 - October 2, 2003, Proceedings. Springer. eScholarID:2h209

• 2003: Dongarra, J., London, K., Moore, S., Mucci, P., Terpstra, D., You, H. & Zhou, M (2003). Experiences and Lessons Learned with a Portable Interface to Hardware Performance Counters. Presented at 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 22-26 April 2003, Nice, France, CD-ROM/Abstracts Proceedings. IEEE Computer Society. eScholarID:2h202

• 2003: Chen, Z., Dongarra, J., Luszczek, P. & Roche, K (2003). Self-Adapting Software for Numerical Linear Algebra Library Routines on Clusters. Presented at Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part III. Springer. eScholarID:2h206

• 2003: Lee, D., Dongarra, J. & Ramakrishna, R (2003). visPerf: Monitoring Tool for Grid Computing. Presented at Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part III. Springer. eScholarID:2h204

• 2003: Vadhiyar, S. & Dongarra, J (2003). A Performance Oriented Migration Framework For The Grid. Presented at 3rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2003), 12-15 May 2003, Tokyo, Japan. IEEE Computer Society. eScholarID:2h197

• 2003: Dongarra, J. & Eijkhout, V (2003). Self-Adapting Numerical Software and Automatic Tuning of Heuristics. Presented at Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part IV. Springer. eScholarID:2h207

• 2003: Eidson, T., Dongarra, J. & Eijkhout, V (2003). Applying Aspect-Orient Programming Concepts to a Component-Based Programming Model. Presented at 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 22-26 April 2003, Nice, France, CD-ROM/Abstracts Proceedings. IEEE Computer Society. eScholarID:2h200

• 2003: Dongarra, J (2003). High Performance Computing Trends and Self Adapting Numerical Software. Presented at High Performance Computing, 5th International Symposium, ISHPC 2003, Tokyo-Odaiba, Japan, October 20-22, 2003, Proceedings. Springer. eScholarID:2h203

• 2003: Hiroyasu, T., Miki, M., Sano, M., Shimosaka, H., Tsutsui, S. & Dongarra, J (2003). Distributed Probabilistic Model-Building Genetic Algorithm. Presented at Genetic and Evolutionary Computation - GECCO 2003, Genetic and Evolutionary Computation Conference, Chicago, IL, USA, July 12-16, 2003. Proceedings, Part I. Springer. eScholarID:2h199

• 2003: Plank, J., Beck, M., Dongarra, J., Wolski, R. & Casanova, H (2003). Optimizing Performance and Reliability in Distributed Computing Systems through Wide Spectrum Storage. Presented at 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 22-26 April 2003, Nice, France, CD-ROM/Abstracts Proceedings. IEEE Computer Society. eScholarID:2h201

• 2003: Vadhiyar, S., Dongarra, J. & YarKhan, A (2003). GrADSolve - RPC for High Performance Computing on the Grid. Presented at Euro-Par 2003. Parallel Processing, 9th International Euro-Par Conference, Klagenfurt, Austria, August 26-29, 2003. Proceedings. Springer. eScholarID:2h198

• 2002: Dongarra, J (2002). High Performance Computing, Computational Grid, and Numerical Libraries. Presented at Applied Parallel Computing Advanced Scientific Computing, 6th International Conference, PARA 2002, Espoo, Finland, June 15-18, 2002, Proceedings. Springer. eScholarID:2h218

• 2002: YarKhan, A. & Dongarra, J (2002). Experiments with Scheduling Using Simulated Annealing in a Grid Environment. Presented at Grid Computing - GRID 2002, Third International Workshop, Baltimore, MD, USA, November 18, 2002, Proceedings. Springer. eScholarID:2h212

• 2002: Vadhiyar, S. & Dongarra, J (2002). A Metascheduler For The Grid. Presented at 11th IEEE International Symposium on High Performance Distributed Computing (HPDC-11 2002), 23-26 July 2002, Edinburgh, Scotland, UK. IEEE Computer Society. eScholarID:2h214

• 2002: Moore, S., Baker, A. & Dongarra, J (2002). Active netlib: an active mathematical software collection for inquiry-based computational science & engineering education. Presented at ACM/IEEE Joint Conference on Digital Libraries, JCDL 2002, Portland, Oregon, USA, June 14-18, 2002, Proceedings. ACM. eScholarID:2h216

• 2002: Dongarra, J (2002). Three Tools to Help with Cluster and Grid Computing: SANS-Effort, PAPI, and NetSolve. Presented at 2nd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2002), 22-24 May 2002, Berlin, Germany. IEEE Computer Society. eScholarID:2h210

• 2002: Seymour, K., Nakada, H., Matsuoka, S., Dongarra, J., Lee, C. & Casanova, H (2002). Overview of GridRPC: A Remote Procedure Call API for Grid Computing. Presented at Grid Computing - GRID 2002, Third International Workshop, Baltimore, MD, USA, November 18, 2002, Proceedings. Springer. eScholarID:2h213

• 2002: Kennedy, K., Mazina, M., Mellor-Crummey, J., Cooper, K., Torczon, L., Berman, F., Chien, A., Dail, H., Sievert, O., Angulo, D., Foster, I., Aydt, R., Reed, D., Gannon, D., Johnsson, S., Kesselman, C., Dongarra, J., Vadhiyar, S. & Wolski, R (2002). Toward a Framework for Preparing and Executing Adaptive Grid Programs. Presented at 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 15-19 April 2002, Fort Lauderdale, FL, USA, CD-ROM/Abstracts Proceedings. IEEE Computer Society. eScholarID:2h215

• 2002: Dongarra, J (2002). Trends in High Performance Computing and Using Numerical Libraries on Cluster. Presented at 2002 IEEE International Conference on Cluster Computing (CLUSTER 2002), 23-26 September 2002, Chicago, IL, USA. IEEE Computer Society. eScholarID:2h211

• 2001: Dongarra, J (2001). NetSolve and Its Applications. Presented at IEEE International Symposium on Network Computing and Applications (NCA 2001), October 8-10, 2001, Cambridge, MA, USA. IEEE Computer Society. eScholarID:2h227

• 2001: London, K., Dongarra, J., Moore, S., Mucci, P., Seymour, K. & Spencer, T (2001). End-user Tools for Application Performance Analysis Using Hardware Counters. Presented at Proceedings of the ISCA 14th International Conference on Parallel and Distributed Computing Systems, August 8-10, 2001, Richardson, Texas, USA. ISCA. eScholarID:2h223

• 2001: Beck, M., Arnold, D., Bassi, A., Dongarra, J., Moore, T., Plank, J., Swany, D., Vadhiyar, S., Wolski, R., Berman, F., Casanova, H. & Obertelli, G (2001). Logistical Computing and Internetworking: Middleware for the Use of Storage in Communication. Presented at 3rd Annual International Workshop on Active Middleware Services (AMS 2001), 6 August 2001, San Francisco, CA, USA. IEEE Computer Society. eScholarID:2h220

• 2001: Fagg, G., Gabriel, E., Resch, M. & Dongarra, J (2001). Parallel IO Support for Meta-computing Applications: MPI_Connect IO Applied to PACX-MPI. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 8th European PVM/MPI Users' Group Meeting, Santorini/Thera, Greece, September 23-26, 2001, Proceedings. Springer. eScholarID:2h229

• 2001: Vadhiyar, S., Fagg, G. & Dongarra, J (2001). Towards an Accurate Model for Collective Communications. Presented at Computational Science - ICCS 2001, International Conference, San Francisco, CA, USA, May 28-30, 2001. Proceedings, Part I. Springer. eScholarID:2h225

• 2001: D'Azevedo, E. & Dongarra, J (2001). Packed Storage Extension for ScaLAPACK. eScholarID:2h228

• 2001: Petitet, A., Blackford, L., Dongarra, J., Ellis, B., Fagg, G., Roche, K. & Vadhiyar, S (2001). Numerical libraries and the grid: the GrADS experiments with ScaLAPACK. eScholarID:2h231

• 2001: Fagg, G., Bukovsky, A. & Dongarra, J (2001). Fault Tolerant MPI for the HARNESS Meta-computing System. Presented at Computational Science - ICCS 2001, International Conference, San Francisco, CA, USA, May 28-30, 2001. Proceedings, Part I. Springer. eScholarID:2h224

• 2001: Seymour, K. & Dongarra, J (2001). Automatic translation of Fortran to JVM bytecode. eScholarID:2h226

• 2001: Dongarra, J (2001). High Performance Computing and Trends: Connected Computational Requirements with Computing Resources. Presented at 2001 IEEE International Conference on Cluster Computing (CLUSTER 2001), 8-11 October 2001, Newport Beach, CA, USA. IEEE Computer Society. eScholarID:2h221

• 2001: Moore, S., Cronk, D., London, K. & Dongarra, J (2001). Review of Performance Analysis Tools for MPI Parallel Programs. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 8th European PVM/MPI Users' Group Meeting, Santorini/Thera, Greece, September 23-26, 2001, Proceedings. Springer. eScholarID:2h230

• 2000: Browne, S., Dongarra, J., Garner, N., London, K. & Mucci, P (2000). A Scalable Cross-Platform Infrastructure for Application Performance Tuning Using Hardware Counters. eScholarID:2h237

• 2000: Fagg, G. & Dongarra, J (2000). FT-MPI: Fault Tolerant MPI, Supporting Dynamic Applications in a Dynamic World. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 7th European PVM/MPI Users' Group Meeting, Balatonfüred, Hungary, September 2000, Proceedings. Springer. eScholarID:2h235

• 2000: Vadhiyar, S., Fagg, G. & Dongarra, J (2000). Automatically Tuned Collective Communications. eScholarID:2h238

• 2000: Arnold, D., Bachmann, D. & Dongarra, J (2000). Request Sequencing: Optimizing Communication for the Grid. Presented at Euro-Par 2000, Parallel Processing, 6th International Euro-Par Conference, Munich, Germany, August 29 - September 1, 2000, Proceedings. Springer. eScholarID:2h232

• 2000: Arnold, D. & Dongarra, J (2000). Developing an Architecture to Support the Implementation and Development of Scientific computing Applications. Presented at The Architecture of Scientific Software, IFIP TC2/WG2.5 Working Conference on the Architecture of Scientific Software, October 2-4, 2000, Ottawa, Canada. Kluwer. eScholarID:2h239

• 2000: Dongarra, J. & Raghavan, P (2000). A Grid Computing Environment for Enabling Large Scale Quantum Mechanical Simulations. Presented at Grid Computing - GRID 2000, First IEEE/ACM International Workshop, Bangalore, India, December 17, 2000, Proceedings. Springer. eScholarID:2h233

• 2000: Fagg, G., Vadhiyar, S. & Dongarra, J (2000). ACCT: Automatic Collective Communications Tuning. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 7th European PVM/MPI Users' Group Meeting, Balatonfüred, Hungary, September 2000, Proceedings. Springer. eScholarID:2h236

• 2000: Arnold, D. & Dongarra, J (2000). Invited Talk: The NetSolve Environment: Progressing Towards the Seamless Grid. eScholarID:2h234

• 1999: Arbenz, P., Cleary, A., Dongarra, J. & Hegland, M (1999). A Comparison of Parallel Solvers for Diagonally Dominant and General Narrow-Banded Linear Systems II. Presented at Euro-Par '99 Parallel Processing, 5th International Euro-Par Conference, Toulouse, France, August 31 - September 3, 1999, Proceedings. Springer. eScholarID:2h240

• 1999: Whaley, R. & Dongarra, J (1999). Automatically Tuned Linear Algebra Software. eScholarID:2h242

• 1999: Casanova, H., Kim, M., Plank, J. & Dongarra, J (1999). Adaptive Scheduling for Task Farming with Grid Middleware. Presented at Euro-Par '99 Parallel Processing, 5th International Euro-Par Conference, Toulouse, France, August 31 - September 3, 1999, Proceedings. Springer. eScholarID:2h241

• 1999: Dongarra, J (1999). The Future of the BLAS. eScholarID:2h243

• 1998: Fagg, G., London, K. & Dongarra, J (1998). MPI_Connect Managing Heterogeneous MPI Applications Ineroperation and Process Control. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 5th European PVM/MPI Users' Group Meeting, Liverpool, UK, September 7-9, 1998, Proceedings. Springer. eScholarID:2h252

• 1998: Wasniewski, J. & Dongarra, J (1998). High Performance Linear Algebra Package for FORTRAN 90. Presented at Applied Parallel Computing, Large Scale Scientific and Industrial Problems, 4th International Workshop, PARA '98, Umeå, Sweden, June 14-17, 1998, Proceedings. Springer. eScholarID:2h251

• 1998: Browne, S., Dongarra, J., Horner, J., McMahan, P. & Wells, S (1998). Technologies for Repository Interoperation and Access Control. Presented at Proceedings of the 3rd ACM International Conference on Digital Libraries, June 23-26, 1998, Pittsburgh, PA, USA. ACM. eScholarID:2h244

• 1998: Migliardi, M., Dongarra, J., Geist, A. & Sunderam, V (1998). Dynamic Reconfiguration and Virtual Machine Management in the Harness Metacomputing System. Presented at Computing in Object-Oriented Parallel Environments, Second International Symposium, ISCOPE 98, Santa Fe, NM, USA, December 8-11, 1998, Proceedings. Springer. eScholarID:2h248

• 1998: Dongarra, J., Fagg, G., Geist, A., Kohl, J., Papadopoulos, P., Scott, S., Sunderam, V. & Magliardi, M (1998). HARNESS: Heterogeneous Adaptable Reconfigurable NEtworked SystemS. eScholarID:2h245

• 1998: Desprez, F., Domas, S., Dongarra, J., Petitet, A., Randriamaro, C. & Robert, Y (1998). More on Scheduling Block-Cyclic Array Redistribution. Presented at Languages, Compilers, and Run-Time Systems for Scalable Computers, 4th International Workshop, LCR '98, Pittsburgh, PA, USA, May 28-30, 1998, Selected Papers. Springer. eScholarID:2h249

• 1998: Casanova, H. & Dongarra, J (1998). NetSolve: A Network-Enabled Solver; Examples and Users. eScholarID:2h246

• 1998: Dongarra, J. & Wasniewski, J (1998). High Performance Linear Algebra Package LAPACK90. eScholarID:2h247

• 1998: Plank, J., Casanova, H., Beck, M. & Dongarra, J (1998). Deploying Fault-Tolerance and Task Migration with NetSolve. Presented at Applied Parallel Computing, Large Scale Scientific and Industrial Problems, 4th International Workshop, PARA '98, Umeå, Sweden, June 14-17, 1998, Proceedings. Springer. eScholarID:2h250

• 1997: Desprez, F., Dongarra, J., Rastello, F. & Robert, Y (1997). Determining the Idle Time of Tiling: New Results. eScholarID:2h255

• 1997: Fagg, G., Dongarra, J. & Geist, A (1997). PVMPI Provides Interoperability Between MPI Implementations. Presented at Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, PPSC 1997, March 14-17, 1997, Hyatt Regency Minneapolis on Nicollel Mall Hotel, Minneapolis, Minnesota, USA. SIAM. eScholarID:2h259

• 1997: Fagg, G., Dongarra, J. & Geist, A (1997). Heterogeneous MPI Application Interoperation and Process Management under PVMPI. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 4th European PVM/MPI Users' Group Meeting, Crakow, Poland, November 3-5, 1997, Proceedings. Springer. eScholarID:2h262

• 1997: Dongarra, J., Henry, G. & Watkins, D (1997). A Distributed Memory Implementation of the Nonsymmetric QR Algorithm. Presented at Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, PPSC 1997, March 14-17, 1997, Hyatt Regency Minneapolis on Nicollel Mall Hotel, Minneapolis, Minnesota, USA. SIAM. eScholarID:2h257

• 1997: Dongarra, J., Desprez, F., Petitet, A., Randriamaro, C. & Robert, Y (1997). Block-Cyclic Array Redistribution on Networks of Workstations. Presented at Recent Advances in Parallel Virtual Machine and Message Passing Interface, 4th European PVM/MPI Users' Group Meeting, Crakow, Poland, November 3-5, 1997, Proceedings. Springer. eScholarID:2h261

• 1997: Strohmaier, E., Dongarra, J., Meuer, H. & Simon, H (1997). Industrial Application Areas of High-Performance Computing. Presented at High-Performance Computing and Networking, International Conference and Exhibition, HPCN Europe 1997, Vienna, Austria, April 28-30, 1997, Proceedings. Springer. eScholarID:2h254

• 1997: Desprez, F., Dongarra, J., Petitet, A., Randriamaro, C. & Robert, Y (1997). Scheduling Block-Cyclic Array Redistribution. eScholarID:2h256

• 1997: Calland, P., Dongarra, J. & Robert, Y (1997). Tiling with limited resources. Presented at 1997 International Conference on Application-Specific Systems, Architectures, and Processors (ASAP '97), 14-16 July 1997, Zurich, Switzerland. IEEE Computer Society. eScholarID:2h253

• 1997: Blackford, L., Dongarra, J., Croz, J., Hammarling, S. & Wasniewski, J (1997). A Further Proposal for a Fortran 90 Interface for LAPACK. Presented at Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, PPSC 1997, March 14-17, 1997, Hyatt Regency Minneapolis on Nicollel Mall Hotel, Minneapolis, Minnesota, USA. SIAM. eScholarID:2h258

• 1997: Blackford, L., Choi, J., Cleary, A., D'Azevedo, E., Demmel, J., Dhillon, I., Dongarra, J., Hammarling, S., Henry, G., Petitet, A., Stanley, K., Walker, D. & Whaley, R (1997). ScaLAPACK: A Linear Algebra Library for Message-Passing Computers. Presented at Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, PPSC 1997, March 14-17, 1997, Hyatt Regency Minneapolis on Nicollel Mall Hotel, Minneapolis, Minnesota, USA. SIAM. eScholarID:2h260

• 1996: Dongarra, J., Croz, J., Hammarling, S., Wasniewski, J. & Zemla, A (1996). Lapack for Fortran90 Compiler. Presented at High-Performance Computing and Networking, International Conference and Exhibition, HPCN Europe 1996, Brussels, Belgium, April 15-19, 1996, Proceedings. Springer. eScholarID:2h265

• 1996: Dongarra, J., Hey, T. & Strohmaier, E (1996). PARKBENCH: Methodology, Relations and Results. Presented at High-Performance Computing and Networking, International Conference and Exhibition, HPCN Europe 1996, Brussels, Belgium, April 15-19, 1996, Proceedings. Springer. eScholarID:2h264

• 1996: Dongarra, J., Meuer, H., Simon, H. & Strohmaier, E (1996). Changing Technologies of HPC. Presented at High-Performance Computing and Networking, International Conference and Exhibition, HPCN Europe 1996, Brussels, Belgium, April 15-19, 1996, Proceedings. Springer. eScholarID:2h266

• 1996: Cleary, A., Demmel, J., Dhillon, I., Dongarra, J., Hammarling, S., Petitet, A., Ren, H., Stanley, K. & Whaley, R (1996). Practical Experience in the Dangers of Heterogeneous Computing. Presented at Applied Parallel Computing, Industrial Computation and Optimization, Third International Workshop, PARA 96, Lyngby, Denmark, August 18-21, 1996, Proceedings. Springer. eScholarID:2h269

• 1996: Browne, S., Casanova, H. & Dongarra, J (1996). Providing Access to High Performance Computing Technologies. Presented at Applied Parallel Computing, Industrial Computation and Optimization, Third International Workshop, PARA 96, Lyngby, Denmark, August 18-21, 1996, Proceedings. Springer. eScholarID:2h267

• 1996: Dongarra, J., Browne, S. & Casanova, H (1996). Providing Access to High Performance Computing Technologies. Presented at Vector and Parallel Processing - VECPAR'96, Second International Conference, Porto, Portugal, September 25-27, Selected Papers. Springer. eScholarID:2h273

• 1996: Dongarra, J., Hey, T. & Strohmaier, E (1996). Selected Results from the ParkBench Benchmark. Presented at Euro-Par '96 Parallel Processing, Second International Euro-Par Conference, Lyon, France, August 26-29, 1996, Proceedings, Volume II. Springer. eScholarID:2h263 | DOI:10.1007/BFb0024709

• 1996: Fagg, G., London, K. & Dongarra, J (1996). Taskers and General Resource Managers: PVM Supporting DCE Process Management. Presented at Parallel Virtual Machine - EuroPVM'96, Third European PVM Conference, München, Germany, October 7-9, 1996, Proceedings. Springer. eScholarID:2h270

• 1996: Dongarra, J., Hammarling, S. & Petitet, A (1996). Case studies on the development of ScaLAPACK and the NAG Numerical PVM Library. Presented at Quality of Numerical Software - Assessment and Enhancement, Proceedings of the IFIP TC2/WG2.5 Working Conference on the Quality of Numerical Software, Assessment and Enhancement, Oxford, UK, 8-12 July 1996. Chapman & Hall. eScholarID:2h272

• 1996: Boisvert, R., Pozo, R., Remington, K., Barrett, R. & Dongarra, J (1996). Matrix Market: a web resource for test matrix collections. Presented at Quality of Numerical Software - Assessment and Enhancement, Proceedings of the IFIP TC2/WG2.5 Working Conference on the Quality of Numerical Software, Assessment and Enhancement, Oxford, UK, 8-12 July 1996. Chapman & Hall. eScholarID:2h271

• 1996: Dongarra, J. & Blackford, L (1996). ScaLAPACK Tutorial. Presented at Applied Parallel Computing, Industrial Computation and Optimization, Third International Workshop, PARA 96, Lyngby, Denmark, August 18-21, 1996, Proceedings. Springer. eScholarID:2h268

• 1995: Dongarra, J (1995). Position Paper. eScholarID:2h282

• 1995: Boisvert, R., Browne, S., Dongarra, J. & Grosse, E (1995). Digital Software and Data Repositories for Support of Scientific Computing. Presented at Digital Libraries, Research and Technology Advances, ADL '95 Forum, McLean, Virginia, USA, May 15-17, 1995, Selected Papers. Springer. eScholarID:2h274

• 1995: Choi, J. & Dongarra, J (1995). Scalable linear algebra software libraries for distributed memory concurrent computers. Presented at 5th IEEE Workshop on Future Trends of Distributed Computing Systems (FTDCS 1995), August 28-30, 1995, Chenju, Korea, Proceedings. IEEE Computer Society. eScholarID:2h277

• 1995: Browne, S., Dongarra, J., Kennedy, K. & Rowan, T (1995). Management of the Nationale HPCC Software Exchange - A Virtual Distributed Digital Library. eScholarID:2h275

• 1995: Plank, J., Kim, Y. & Dongarra, J (1995). Algorithm-Based Diskless Checkpointing for Fault Tolerant Matrix Operations. eScholarID:2h276

• 1995: Dongarra, J. & Petitet, A (1995). ScaLAPACK Tutorial. Presented at Applied Parallel Computing, Computations in Physics, Chemistry and Engineering Science, Second International Workshop, PARA '95, Lyngby, Denmark, August 21-24, 1995, Proceedings. Springer. eScholarID:2h280

• 1995: Browne, S., Dongarra, J., Green, S., Moore, K., Pepin, T., Rowan, T. & Wade, R (1995). Location-Independent Naming for Virtual Distributed Software Repositories. eScholarID:2h284

• 1995: Dongarra, J., Croz, J., Hammarling, S., Wasniewski, J. & Zemla, A (1995). A Proposal for a Fortran 90 Interface for LAPACK. Presented at Applied Parallel Computing, Computations in Physics, Chemistry and Engineering Science, Second International Workshop, PARA '95, Lyngby, Denmark, August 21-24, 1995, Proceedings. Springer. eScholarID:2h279

• 1995: Browne, S., Dongarra, J., Fox, G., Hawick, K., Kennedy, K., Stevens, R., Olson, R. & Rowan, T (1995). Distributed Information Management in the National HPCC Software Exchange. eScholarID:2h283

• 1995: Choi, J., Dongarra, J., Ostrouchov, S., Petitet, A., Walker, D. & Whaley, R (1995). A Proposal for a Set of Parallel Basic Linear Algebra Subprograms. Presented at Applied Parallel Computing, Computations in Physics, Chemistry and Engineering Science, Second International Workshop, PARA '95, Lyngby, Denmark, August 21-24, 1995, Proceedings. Springer. eScholarID:2h278

• 1995: Choi, J., Demmel, J., Dhillon, I., Dongarra, J., Ostrouchov, S., Petitet, A., Stanley, K., Walker, D. & Whaley, R (1995). ScaLAPACK: A Portable Linear Algebra Library for Distributed Memory Computers - Design Issues and Performance. Presented at Applied Parallel Computing, Computations in Physics, Chemistry and Engineering Science, Second International Workshop, PARA '95, Lyngby, Denmark, August 21-24, 1995, Proceedings. Springer. eScholarID:2h281

• 1994: Choi, J., Walker, D. & Dongarra, J (1994). The Design of Scalable Software Libraries for Distributed Memory Concurrent Computers. Presented at Proceedings of the 8th International Symposium on Parallel Processing, Cancún, Mexico, April 1994. IEEE Computer Society. eScholarID:2h286

• 1994: Dongarra, J (1994). Constructing Numerical Software Libraries for HPCC Environments. eScholarID:2h285

• 1994: Choi, J., Dongarra, J., Pozo, R. & Walker, D (1994). Constructing Numerical Software Libraries for High-Performance Computing Environments. Presented at Parallel Scientific Computing, First International Workshop, PARA '94, Lyngby, Denmark, June 20-23, 1994, Proceedings. Springer. eScholarID:2h287

• 1993: Dongarra, J., Geist, A., Manchek, R. & Jiang, W (1993). Using PVM 3.0 to Run Grand Challenge Applications on a Heterogeneous Network of Parallel Computers. eScholarID:2h291

• 1993: Beguelin, A., Dongarra, J., Geist, A., Manchek, R., Moore, K. & Sunderam, V (1993). Tools for Heterogeneous Network Computing. eScholarID:2h290

• 1993: Dongarra, J., Geijn, R. & Whaley, R (1993). Two Dimensional Basic Linear Algebra Communication Subprograms. eScholarID:2h289

• 1993: Dongarra, J., Pozo, R. & Walker, D (1993). LAPACK++: a design overview of object-oriented extensions for high performance linear algebra. eScholarID:2h292

• 1993: Demmel, J., Dongarra, J., Geijn, R. & Walker, D (1993). LAPACK for Distributed Memory Architectures: The Next Generation. eScholarID:2h288

• 1991: Anderson, E., Benzoni, A., Dongarra, J., Moulton, S., Ostrouchov, S., Tourancheau, B. & Geijn, R (1991). LAPACK for Distributed Memory Architectures: Progress Report. Presented at Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, Houston, Texas, USA, March 25-27, 1991. SIAM. eScholarID:2h294

• 1991: Beguelin, A., Dongarra, J., Geist, A., Manchek, R. & Sunderam, V (1991). Solving Computational Grand Challenges Using a Network of Heterogeneous Supercomputers. Presented at Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, Houston, Texas, USA, March 25-27, 1991. SIAM. eScholarID:2h293

• 1991: Dongarra, J., Karp, A., Miura, K. & Simon, H (1991). Gordon Bell prize lectures. eScholarID:2h295

• 1991: Beguelin, A. & Dongarra, J (1991). Graphical development tools for network-based concurrent supercomputing. eScholarID:2h296

• 1990: Anderson, E., Bai, Z., Dongarra, J., Greenbaum, A., McKenney, A., Croz, J., Hammarling, S., Demmel, J., Bischof, C. & Sorensen, D (1990). LAPACK: a portable linear algebra library for high-performance computers. eScholarID:2h297

• 1989: Anderson, E. & Dongarra, J (1989). Evaluating Block Algorithm Variants in LAPACK. Presented at Proceedings of the Fourth SIAM Conference on Parallel Processing for Scientific Computing, Chicago, Illinois, USA, December 11-13, 1989. SIAM. eScholarID:2h298

• 1988: Callahan, D., Dongarra, J. & Levine, D (1988). Vectorizing compilers: a test suite and results. eScholarID:2h299

• 1987: Dongarra, J (1987). The LINPACK Benchmark: An Explanation. Presented at Supercomputing, 1st International Conference, Athens, Greece, June 8-12, 1987, Proceedings. Springer. eScholarID:2h300

• 1987: Dongarra, J., Croz, J., Duff, I. & Hammarling, S (1987). A Proposal for a Set of Level 3 Basic Linear Algebra Subprograms. Presented at Proceedings of the Third SIAM Conference on Parallel Processing for Scientific Computing, Los Angeles, California, USA, December 1-4, 1987. SIAM. eScholarID:2h302

• 1987: Dongarra, J. & Sorensen, D (1987). SCHEDULE: An Environment for Developing Transportable Explicitly Parallel Codes in Fortran-Abstract. Presented at Proceedings of the Third SIAM Conference on Parallel Processing for Scientific Computing, Los Angeles, California, USA, December 1-4, 1987. SIAM. eScholarID:2h301

• 1985: Dongarra, J. & Sorensen, D (1985). A fully parallel algorithm for the symmetric eigenvalue problem. Presented at Selected Papers from the Second Conference on Parallel Processing for Scientific Computing, Norfolk, Virginia, USA, November 18-21, 1985. SIAM. eScholarID:2h303

Jack Dongarra - Conference proceeding

• 2009: Allen, G., Nabrzyski, J., Seidel, E., Albada, G., Dongarra, J. & Sloot, P (2009). Computational Science - ICCS 2009, 9th International Conference, Baton Rouge, LA, USA, May 25-27, 2009, Proceedings, Part II. Presented at ICCS (2). Springer. eScholarID:6h7 | DOI:10.1007/978-3-642-01973-9

• 2009: Allen, G., Nabrzyski, J., Seidel, E., Albada, G., Dongarra, J. & Sloot, P (2009). Computational Science - ICCS 2009, 9th International Conference, Baton Rouge, LA, USA, May 25-27, 2009, Proceedings, Part I. Presented at ICCS (1). Springer. eScholarID:6h6 | DOI:10.1007/978-3-642-01970-8

• 2009: Ropo, M., Westerholm, J. & Dongarra, J (2009). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 16th European PVM/MPI Users' Group Meeting, Espoo, Finland, September 7-10, 2009. Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h8 | DOI:10.1007/978-3-642-03770-2

• 2008: Bubak, M., Albada, G., Dongarra, J. & Sloot, P (2008). Computational Science - ICCS 2008, 8th International Conference, Kraków, Poland, June 23-25, 2008, Proceedings, Part II. Presented at ICCS (2). Springer. eScholarID:6h11

• 2008: Wyrzykowski, R., Dongarra, J., Karczewski, K. & Wasniewski, J (2008). Parallel Processing and Applied Mathematics, 7th International Conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007, Revised Selected Papers. Presented at PPAM. Springer. eScholarID:6h9

• 2008: Lastovetsky, A., Kechadi, M. & Dongarra, J (2008). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 15th European PVM/MPI Users' Group Meeting, Dublin, Ireland, September 7-10, 2008. Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h13

• 2008: Bubak, M., Albada, G., Dongarra, J. & Sloot, P (2008). Computational Science - ICCS 2008, 8th International Conference, Kraków, Poland, June 23-25, 2008, Proceedings, Part III. Presented at ICCS (3). Springer. eScholarID:6h12

• 2008: Bubak, M., Albada, G., Dongarra, J. & Sloot, P (2008). Computational Science - ICCS 2008, 8th International Conference, Kraków, Poland, June 23-25, 2008, Proceedings, Part I. Presented at ICCS (1). Springer. eScholarID:6h10

• 2007: Kågström, B., Elmroth, E., Dongarra, J. & Wasniewski, J (2007). Applied Parallel Computing. State of the Art in Scientific Computing, 8th International Workshop, PARA 2006, Umeå, Sweden, June 18-21, 2006, Revised Selected Papers. Presented at PARA. Springer. eScholarID:6h19

• 2007: Shi, Y., Albada, G., Dongarra, J. & Sloot, P (2007). Computational Science - ICCS 2007, 7th International Conference, Beijing, China, May 27 - 30, 2007, Proceedings, Part IV. Presented at ICCS (4). Springer. eScholarID:6h18

• 2007: Shi, Y., Albada, G., Dongarra, J. & Sloot, P (2007). Computational Science - ICCS 2007, 7th International Conference, Beijing, China, May 27 - 30, 2007, Proceedings, Part III. Presented at ICCS (3). Springer. eScholarID:6h17

• 2007: Shi, Y., Albada, G., Dongarra, J. & Sloot, P (2007). Computational Science - ICCS 2007, 7th International Conference, Beijing, China, May 27 - 30, 2007, Proceedings, Part II. Presented at ICCS (2). Springer. eScholarID:6h16

• 2007: Shi, Y., Albada, G., Dongarra, J. & Sloot, P (2007). Computational Science - ICCS 2007, 7th International Conference Beijing, China, May 27-30, 2007, Proceedings, Part I. Presented at ICCS (1). Springer. eScholarID:6h15

• 2007: Cappello, F., Hérault, T. & Dongarra, J (2007). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 14th European PVM/MPI User's Group Meeting, Paris, France, September 30 - October 3, 2007, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h20

• 2007: Kesselman, C., Dongarra, J. & Walker, D (2007). Proceedings of the 16th International Symposium on High-Performance Distributed Computing (HPDC-16 2007), 25-29 June 2007, Monterey, California, USA. Presented at HPDC. ACM. eScholarID:6h14

• 2006: Ni, J. & Dongarra, J (2006). Interdisciplinary and Multidisciplinary Research in Computer Science, IEEE CS Proceeding of the First International Multi-Symposium of Computer and Computational Sciences (IMSCCS|06), June 20-24, 2006, Zhejiang University, Hangzhou, China, Vol. 1. Presented at IMSCCS (1). IEEE Computer Society. eScholarID:6h21

• 2006: Ni, J. & Dongarra, J (2006). Interdisciplinary and Multidisciplinary Research in Computer Science, IEEE CS Proceeding of the First International Multi-Symposium of Computer and Computational Sciences (IMSCCS|06), June 20-24, 2006, Zhejiang University, Hangzhou, China, Vol. 2. Presented at IMSCCS (2). IEEE Computer Society. eScholarID:6h22

• 2006: Alexandrov, V., Albada, G., Sloot, P. & Dongarra, J (2006). Computational Science - ICCS 2006, 6th International Conference, Reading, UK, May 28-31, 2006, Proceedings, Part I. Presented at International Conference on Computational Science (1). Springer. eScholarID:6h25

• 2006: Wyrzykowski, R., Dongarra, J., Meyer, N. & Wasniewski, J (2006). Parallel Processing and Applied Mathematics, 6th International Conference, PPAM 2005, Poznan, Poland, September 11-14, 2005, Revised Selected Papers. Presented at PPAM. Springer. eScholarID:6h24

• 2006: Dongarra, J., Madsen, K. & Wasniewski, J (2006). Applied Parallel Computing, State of the Art in Scientific Computing, 7th International Workshop, PARA 2004, Lyngby, Denmark, June 20-23, 2004, Revised Selected Papers. Presented at PARA. Springer. eScholarID:6h23

• 2006: Alexandrov, V., Albada, G., Sloot, P. & Dongarra, J (2006). Computational Science - ICCS 2006, 6th International Conference, Reading, UK, May 28-31, 2006, Proceedings, Part II. Presented at International Conference on Computational Science (2). Springer. eScholarID:6h26

• 2006: Alexandrov, V., Albada, G., Sloot, P. & Dongarra, J (2006). Computational Science - ICCS 2006, 6th International Conference, Reading, UK, May 28-31, 2006, Proceedings, Part IV. Presented at International Conference on Computational Science (4). Springer. eScholarID:6h28

• 2006: Alexandrov, V., Albada, G., Sloot, P. & Dongarra, J (2006). Computational Science - ICCS 2006, 6th International Conference, Reading, UK, May 28-31, 2006, Proceedings, Part III. Presented at International Conference on Computational Science (3). Springer. eScholarID:6h27

• 2006: Mohr, B., Träff, J., Worringen, J. & Dongarra, J (2006). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 13th European PVM/MPI User's Group Meeting, Bonn, Germany, September 17-20, 2006, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h29

• 2006: Guo, M., Yang, L., Martino, B., Zima, H., Dongarra, J. & Tang, F (2006). Parallel and Distributed Processing and Applications, 4th International Symposium, ISPA 2006, Sorrento, Italy, December 4-6, 2006, Proceedings. Presented at ISPA. Springer. eScholarID:6h30

• 2005: Sunderam, V., Albada, G., Sloot, P. & Dongarra, J (2005). Computational Science - ICCS 2005, 5th International Conference, Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part I. Presented at International Conference on Computational Science (1). Springer. eScholarID:6h32

• 2005: Daydé, M., Dongarra, J., Hernández, V. & Palma, J (2005). High Performance Computing for Computational Science - VECPAR 2004, 6th International Conference, Valencia, Spain, June 28-30, 2004, Revised Selected and Invited Papers. Presented at VECPAR. Springer. eScholarID:6h31

• 2005: Yang, L., Rana, O., Martino, B. & Dongarra, J (2005). High Performance Computing and Communications, First International Conference, HPCC 2005, Sorrento, Italy, September 21-23, 2005, Proceedings. Presented at HPCC. Springer. eScholarID:6h36

• 2005: Sunderam, V., Albada, G., Sloot, P. & Dongarra, J (2005). Computational Science - ICCS 2005, 5th International Conference, Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part III. Presented at International Conference on Computational Science (3). Springer. eScholarID:6h34

• 2005: Pan, Y., Chen, D., Guo, M., Cao, J. & Dongarra, J (2005). Parallel and Distributed Processing and Applications, Third International Symposium, ISPA 2005, Nanjing, China, November 2-5, 2005, Proceedings. Presented at ISPA. Springer. eScholarID:6h37

• 2005: Sunderam, V., Albada, G., Sloot, P. & Dongarra, J (2005). Computational Science - ICCS 2005, 5th International Conference, Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part II. Presented at International Conference on Computational Science (2). Springer. eScholarID:6h33

• 2005: Martino, B., Kranzlmüller, D. & Dongarra, J (2005). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 12th European PVM/MPI Users' Group Meeting, Sorrento, Italy, September 18-21, 2005, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h35

• 2004: Bubak, M., Albada, G., Sloot, P. & Dongarra, J (2004). Computational Science - ICCS 2004, 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part IV. Presented at International Conference on Computational Science. Springer. eScholarID:6h42

• 2004: Kranzlmüller, D., Kacsuk, P. & Dongarra, J (2004). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 11th European PVM/MPI Users' Group Meeting, Budapest, Hungary, September 19-22, 2004, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h43

• 2004: Bubak, M., Albada, G., Sloot, P. & Dongarra, J (2004). Computational Science - ICCS 2004, 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part II. Presented at International Conference on Computational Science. Springer. eScholarID:6h40

• 2004: Bubak, M., Albada, G., Sloot, P. & Dongarra, J (2004). Computational Science - ICCS 2004, 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part I. Presented at International Conference on Computational Science. Springer. eScholarID:6h39

• 2004: Wyrzykowski, R., Dongarra, J., Paprzycki, M. & Wasniewski, J (2004). Parallel Processing and Applied Mathematics, 5th International Conference, PPAM 2003, Czestochowa, Poland, September 7-10, 2003. Revised Papers. Presented at PPAM. Springer. eScholarID:6h38

• 2004: Bubak, M., Albada, G., Sloot, P. & Dongarra, J (2004). Computational Science - ICCS 2004, 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part III. Presented at International Conference on Computational Science. Springer. eScholarID:6h41

• 2003: Dongarra, J., Laforenza, D. & Orlando, S (2003). Recent Advances in Parallel Virtual Machine and Message Passing Interface,10th European PVM/MPI Users' Group Meeting, Venice, Italy, September 29 - October 2, 2003, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h49

• 2003: Sloot, P., Abramson, D., Bogdanov, A., Dongarra, J., Zomaya, A. & Gorbachev, Y (2003). Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part III. Presented at International Conference on Computational Science. Springer. eScholarID:6h47

• 2003: Palma, J., Dongarra, J., Hernández, V. & Sousa, A (2003). igh Performance Computing for Computational Science - VECPAR 2002, 5th International Conference, Porto, Portugal, June 26-28, 2002, Selected Papers and Invited Talks. Presented at VECPAR. Springer. eScholarID:6h44

• 2003: Sloot, P., Abramson, D., Bogdanov, A., Dongarra, J., Zomaya, A. & Gorbachev, Y (2003). Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part IV. Presented at International Conference on Computational Science. Springer. eScholarID:6h48

• 2003: Sloot, P., Abramson, D., Bogdanov, A., Dongarra, J., Zomaya, A. & Gorbachev, Y (2003). Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part I. Presented at International Conference on Computational Science. Springer. eScholarID:6h45

• 2003: Sloot, P., Abramson, D., Bogdanov, A., Dongarra, J., Zomaya, A. & Gorbachev, Y (2003). Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part II. Presented at International Conference on Computational Science. Springer. eScholarID:6h46

• 2002: Wyrzykowski, R., Dongarra, J., Paprzycki, M. & Wasniewski, J (2002). Parallel Processing and Applied Mathematics, 4th International Conference, PPAM 2001 Naleczow, Poland, September 9-12, 2001, Revised Papers. Presented at PPAM. Springer. eScholarID:6h50

• 2002: Sloot, P., Tan, C., Dongarra, J. & Hoekstra, A (2002). Computational Science - ICCS 2002, International Conference, Amsterdam, The Netherlands, April 21-24, 2002. Proceedings, Part I. Presented at International Conference on Computational Science. Springer. eScholarID:6h51

• 2002: Kranzlmüller, D., Kacsuk, P., Dongarra, J. & Volkert, J (2002). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 9th European PVM/MPI Users' Group Meeting, Linz, Austria, September 29 - October 2, 2002, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h54

• 2002: Sloot, P., Tan, C., Dongarra, J. & Hoekstra, A (2002). Computational Science - ICCS 2002, International Conference, Amsterdam, The Netherlands, April 21-24, 2002. Proceedings, Part II. Presented at International Conference on Computational Science. Springer. eScholarID:6h52

• 2002: Sloot, P., Tan, C., Dongarra, J. & Hoekstra, A (2002). Computational Science - ICCS 2002, International Conference, Amsterdam, The Netherlands, April 21-24, 2002. Proceedings, Part III. Presented at International Conference on Computational Science. Springer. eScholarID:6h53

• 2001: Palma, J., Dongarra, J. & Hernández, V (2001). Vector and Parallel Processing - VECPAR 2000, 4th International Conference, Porto, Portugal, June 21-23, 2000, Selected Papers and Invited Talks. Presented at VECPAR. Springer. eScholarID:6h55

• 2001: Alexandrov, V., Dongarra, J., Juliano, B., Renner, R. & Tan, C (2001). Computational Science - ICCS 2001, International Conference, San Francisco, CA, USA, May 28-30, 2001. Proceedings, Part II. Presented at International Conference on Computational Science. Springer. eScholarID:6h57

• 2001: Alexandrov, V., Dongarra, J., Juliano, B., Renner, R. & Tan, C (2001). Computational Science - ICCS 2001, International Conference, San Francisco, CA, USA, May 28-30, 2001. Proceedings, Part I. Presented at International Conference on Computational Science. Springer. eScholarID:6h56

• 2001: Cotronis, Y. & Dongarra, J (2001). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 8th European PVM/MPI Users' Group Meeting, Santorini/Thera, Greece, September 23-26, 2001, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h58

• 2000: Dongarra, J., Kacsuk, P. & Podhorszki, N (2000). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 7th European PVM/MPI Users' Group Meeting, Balatonfüred, Hungary, September 2000, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h59

• 1999: Dongarra, J., Luque, E. & Margalef, T (1999). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 6th European PVM/MPI Users' Group Meeting, Barcelona, Spain, September 26-29, 1999, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h61

• 1999: Palma, J., Dongarra, J. & Hernández, V (1999). Vector and Parallel Processing - VECPAR '98, Third International Conference, Porto, Portugal, June 21-23, 1998, Selected Papers and Invited Talks. Presented at VECPAR. Springer. eScholarID:6h60

• 1998: Alexandrov, V. & Dongarra, J (1998). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 5th European PVM/MPI Users' Group Meeting, Liverpool, UK, September 7-9, 1998, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h62

• 1998: Kågström, B., Dongarra, J., Elmroth, E. & Wasniewski, J (1998). Applied Parallel Computing, Large Scale Scientific and Industrial Problems, 4th International Workshop, PARA '98, Umeå, Sweden, June 14-17, 1998, Proceedings. Presented at PARA. Springer. eScholarID:6h63

• 1997: Palma, J. & Dongarra, J (1997). Vector and Parallel Processing - VECPAR'96, Second International Conference, Porto, Portugal, September 25-27, Selected Papers. Presented at VECPAR. Springer. eScholarID:6h64

• 1997: Bubak, M., Dongarra, J. & Wasniewski, J (1997). Recent Advances in Parallel Virtual Machine and Message Passing Interface, 4th European PVM/MPI Users' Group Meeting, Crakow, Poland, November 3-5, 1997, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h65

• 1996: Bode, A., Dongarra, J., 0002, T. & Sunderam, V (1996). Parallel Virtual Machine - EuroPVM'96, Third European PVM Conference, München, Germany, October 7-9, 1996, Proceedings. Presented at PVM/MPI. Springer. eScholarID:6h67

• 1996: Dongarra, J., Madsen, K. & Wasniewski, J (1996). Applied Parallel Computing, Computations in Physics, Chemistry and Engineering Science, Second International Workshop, PARA '95, Lyngby, Denmark, August 21-24, 1995, Proceedings. Presented at PARA. Springer. eScholarID:6h66

• 1996: Wasniewski, J., Dongarra, J., Madsen, K. & Olesen, D (1996). Applied Parallel Computing, Industrial Computation and Optimization, Third International Workshop, PARA 96, Lyngby, Denmark, August 18-21, 1996, Proceedings. Presented at PARA. Springer. eScholarID:6h68

• 1994: Dongarra, J. & Wasniewski, J (1994). Parallel Scientific Computing, First International Workshop, PARA '94, Lyngby, Denmark, June 20-23, 1994, Proceedings. Presented at PARA. Springer. eScholarID:6h69

• 1992: Dongarra, J., Kennedy, K., Messina, P., Sorensen, D. & Voigt, R (1992). Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, Houston, Texas, USA, March 25-27, 1991. Presented at PPSC. SIAM. eScholarID:6h70

• 1990: Dongarra, J., Messina, P., Sorensen, D. & Voigt, R (1990). Proceedings of the Fourth SIAM Conference on Parallel Processing for Scientific Computing, Chicago, Illinois, USA, December 11-13, 1989. Presented at PPSC. SIAM. eScholarID:6h71

Jack Dongarra - Book

• 1977: Garbow, Burton S, James M Boyle, Jack Dongarra, and Cleve B Moler. (1977). Matrix Eigensystem Routines - EISPACK Guide Extension. (51). Springer. eScholarID:4h2

• 1976: Smith, Brian T, James M Boyle, Jack Dongarra, Burton S Garbow, Yasuhiko Ikebe, Virginia C Klema, and Cleve B Moler. (1976). Matrix Eigensystem Routines - EISPACK Guide, Second Edition. (6). Springer. eScholarID:4h3

Jack Dongarra - Book contribution

• 1995: Bai, Z., Day, D., Demmel, J., Dongarra, J., Gu, M., Ruhe, A. & Vorst, H (1995). Templates for Linear Algebra Problems. In Leeuwen, J. (Ed.), Computer Science Today. (pp. 115-140). Springer. eScholarID:3h3 | DOI:10.1007/BFb0015240

Daniel Dresner - Thesis (University required)

• 2011: Dresner, Daniel Gideon. (2011). A STUDY OF STANDARDS AND THE MITIGATION OF RISK IN INFORMATION SYSTEMS. Manchester, UK: The University of Manchester. eScholarID:125600

Salil Prashant Deena - Conference contribution

• 2010: Salil Deena, Shaobo Hou, Aphrodite Galata. (2010). Visual Speech Synthesis by Modelling Coarticulation Dynamics using a Non-Parametric Switching State-Space Model. Presented at International Conference on Multimodal Interfaces. Beijing, China: Association for Computing Machinery. eScholarID:127831

• 2009: Salil Deena, Aphrodite Galata. (2009). Speech-Driven Facial Animation Using a Shared Gaussian Process Latent Variable Model. Presented at International Symposium on Visual Computing. Las Vegas, USA: Springer. eScholarID:127829

David Devereux - Thesis (University required)

• 2010: Devereux, David. (2010). Control Strategies for Whole Arm Grasping. Manchester, UK: The University of Manchester. eScholarID:98345

James Eales - Journal article

• 2011: Afzal H, Eales J, Stevens R, Nenadic G. (2011). Mining semantic networks of bioinformatics e-resources from the literature. Journal of Biomedical Semantics, 2(Suppl 1:S4), eScholarID:153507

• 2008: Eales, J., Pinney, J., Stevens, R. & Robertson, D (2008). Methodology capture: discriminating between the "best" and the rest of community practice. BMC Bioinformatics, 9, 359. eScholarID:8780 | DOI:10.1186/1471-2105-9-359

• 1900: Eales JM, Robertson D, Nenadic G, Stevens R. (In-press). Metrics on methods: Valuing the process. Preprint, eScholarID:153478

• 1900: Eales JM, Robertson D, Nenadic G, Stevens R. (In-press). Looking in the right place: classifying manuscript sections. eScholarID:153483

• 1900: Eales JM, Robertson D, Nenadic G, Stevens R. (In-press). Software for collecting and processing large numbers of full-text articles. eScholarID:153485

James Eales - Conference contribution

• 2011: Eales, J., Demetriou, G., Stevens, R. (2011). An exercise in kidney factomics: From article titles to RDF knowledge base. Presented at ISMB 2011. Vienna. eScholarID:128469

• 2011: Eales, J., Demetriou, G., Stevens, R. (2011). An exercise in kidney factomics: From article titles to RDF knowledge base. Presented at Bio-ontologies SIG, ISMB 2011. Vienna. eScholarID:128467

• 2011: Jupp, S., Eales, J., Stevens, R., Williams, A., Ramgolam, R., Fischer, S., Land, S. (2011). Combining RapidMiner Operators with Bioinformatics Services - A Powerful Combination. Presented at RCOMM2011. Dublin. eScholarID:128466

• 2011: Eales, J., Demetriou, G., Stevens, R. (2011). Creating a focused corpus of factual outcomes from biomedical experiments. Presented at MIND workshop, ECML/PKDD 2011. Athens. eScholarID:128468

• 2009: Afzal H, Eales J, Stevens R and Nenadic G. (2009). Mining Semantic Networks of Bioinformatics e-Resources from the Literature. Presented at SWAT4LS. Amsterdam. eScholarID:98012

• 2009: Sarafraz F, Eales JM, Mohammadi R, Dickerson J, Robertson DL, Nenadic G. (2009). Biomedical event detection using rules, conditional random fields and parse tree distances. Presented at NAACL-HLT 2009. Boulder, Colorada. eScholarID:98009

• 2008: JM Eales, RD Stevens, DL Robertson. (2008). Full-Text Mining: Linking Practice, Protocols and Articles in Biological Research. Presented at ISMB. Toronto, Canada. eScholarID:98005

Douglas Edwards - Journal article

• 2010: Taylor, S.; Edwards, D.A.; Plana, L.A.; Tarazona D, L.A (2010). Asynchronous Data-Driven Circuit Synthesis. IEEE Transactions on Very Large Scale Integration (VLSI) Systems, 18(7), 1093-1106. eScholarID:105735 | DOI:10.1109/TVLSI.2009.2020168

• 2008: Nunez-Yanez, J., Edwards, D. & Coppola, A (2008). Adaptive routing strategies for fault-tolerant on-chip networks in dynamically reconfigurable systems. IET Comput. Digit. Tech, 2(3), 184-198. eScholarID:1f167 | DOI:10.1049/iet-cdt:20060175

• 2005: Efthymiou, A., Bainbridge, J. & Edwards, D (2005). Test pattern generation and partial-scan methodology for an asynchronous SoC interconnect. IEEE Trans. VLSI Syst, 13(12), 1384-1393. eScholarID:1h193

• 2005: EDWARDS DA; EFTHYMIOU A; BAINBRIDGE J. (2005). Test Pattern Generation and Partial-Scan Methodology for an Asynchronous SoC Interconnect. IEEE Transactions on Very Large Scale Integration (VLSI) Systems, 13(12), 1384-1393. eScholarID:1a9896 | DOI:10.1109/TVLSI.2005.862722

• 2005: EDWARDS DA; MADE M; EFTHYMIOU A; LAVAGNO L; . (2005). Asynchronous on-chip networks. IEE Proceedings - Computers and Digital Techniques, 152(2), 273-283. eScholarID:1a9897 | DOI:10.1049/ip-cdt:20045093

• 2000: Bardsley, A. & Edwards, D (2000). Synthesising an asynchronous DMA controller with Balsa. Journal of Systems Architecture, 46(14), 1309-1319. eScholarID:1h191 | DOI:10.1016/S1383-7621(00)00026-6

• 1995: Edwards, D. & Cohen, D (1995). An Unusual Moving Boundary Condition Arising in Anomalous Diffusion Problems. SIAM Journal of Applied Mathematics, 55(3), 662-676. eScholarID:1h189 | DOI:10.1137/S003613999325405X

• 1987: Hobbs, J., Croft, W., Davies, T., Edwards, D. & Laws, K (1987). Commonsense Metaphysics and Lexical Semantics. Computational Linguistics, 13(3-4), 241-250. eScholarID:1h192