Publications

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2011

  1. Baran, J., Gerner, M., Haeussler, M., Nenadic, G., & Bergman, C. M. (2011). pubmed2ensembl: A resource for mining the biological literature on genes. PLoS ONE, 6(9), [e24716]. DOI: 10.1371/journal.pone.0024716. Publication link: 5afdc557-0d00-4b48-a78c-88f86b92e966 | PubMed:21980353
  2. Afzal, H., Eales, J., Stevens, R., & Nenadic, G. (2011). Mining Semantic Networks of Bioinformatics e-Resources from the Literature. Journal of Biomedical Semantics, 2(Suppl. 1). DOI: 10.1186/2041-1480-2-S1-S4. Publication link: 9e17947f-033f-4940-a829-e871b463874b
  3. Hakenberg, J., Gerner, M., Haeussler, M., Solt, I., Plake, C., Schroeder, M., ... Bergman, C. M. (2011). The GNAT library for local and remote gene mention normalization. Bioinformatics, 27(19), 2769-2771. [btr455]. DOI: 10.1093/bioinformatics/btr455. Publication link: 966b3222-110f-46ef-8f60-6e8f17e5a663 | PubMed:21813477
  4. Liang, S. F., Stevens, R., Scott, D., & Rector, A. (2011). Automatic verbalisation of SNOMED classes using OntoVerbal. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 6747, pp. 338-342). (Lecture Notes in Computer Science LCNS). Springer Verlag. DOI: 10.1007/978-3-642-22218-4_43. Publication link: e09b2063-83e6-4f8f-9c2e-f6e3e2bf3ada
  5. Rector, A., Iannone, L., & Stevens, R. (2011). Quality assurance of the content of a large DL-based terminology using mixed lexical and semantic criteria: Experience with SNOMED CT. In KCAP 2011 - Proceedings of the 2011 Knowledge Capture Conference|KCAP - Proc. Knowl. Capture Conf.. (pp. 57-64). ACM. DOI: 10.1145/1999676.1999688. Publication link: f44026b8-7a7b-496e-9418-09f0d16e4eda
  6. Mikroyannidi, E., Iannone, L., Stevens, R., & Rector, A. (2011). Inspecting regularities in ontology design using clustering. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 7031, pp. 438-453). (Lecture Notes in Computer Science LCNS). Springer Verlag. DOI: 10.1007/978-3-642-25073-6_28. Publication link: 53131678-84ce-4650-b089-e183e1c001df
  7. Liang, S. F., Stevens, R., & Rector, A. (2011). OntoVerbal-M: A multilingual verbaliser for SNOMED CT. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 775, pp. 13-24). (CEUR Workshop Proceedings). CEUR-WS. . Publication link: 5b85dd51-4ac1-4deb-8e5e-2757699a8ac2
  8. Bail, S., Horridge, M., Parsia, B., & Sattler, U. (2011). The justificatory structure of the NCBO bioportal ontologies. In The Semantic Web-ISWC 2011. (pp. 67-82). Springer Berlin Heidelberg. . Publication link: a5da05cc-5553-4046-a025-cdac5d956f5d
  9. Goncalves, R. S., Parsia, B., & Sattler, U. (2011). Analysing multiple versions of an ontology: A study of the NCI Thesaurus. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 745, pp. 147-157). (CEUR Workshop Proceedings). CEUR-WS.org. . Publication link: ad2a53e1-42aa-493f-90f8-f811aec127a8
  10. Frenzel, C., Parsia, B., Sattler, U., & Bauer, B. (2011). Mooop - A hybrid integration of OWL and Java. In Lecture Notes in Business Information Processing|Lect. Notes Bus. Inf. Process.. (Vol. 83, pp. 437-447). DOI: 10.1007/978-3-642-22056-2_47. Publication link: b3895ec2-f457-40c8-9d88-ff925ecc0d78
  11. Gonçalves, R. S., Parsia, B., & Sattler, U. (2011). Categorising logical differences between OWL ontologies. In Proceedings of the 20th ACM international conference on Information and knowledge management. (pp. 1541-1546). ACM. DOI: 10.1145/2063576.2063797. Publication link: b2256b97-bc1d-48c2-8ddf-cfe145cf66b6
  12. Frenzel, C., Parsia, B., Sattler, U., & Bauer, B. (2011). Mooop-a hybrid integration of owl and java. In Advanced Information Systems Engineering Workshops. (pp. 437-447). Springer Berlin Heidelberg. . Publication link: c204aef2-c12b-4cc7-82e0-7edf24a8e1aa
  13. Del Vescovo, C., Parsia, B., Sattler, U., & Schneider, T. (2011). The modular structure of an ontology: Atomic decomposition. IJCAI Proceedings-International Joint Conference on Artificial Intelligence, 22(3). . Publication link: c8099bee-58fe-402e-8c89-cb10c3356ed5
  14. Bail, S., Horridge, M., Parsia, B., & Sattler, U. (2011). The justificatory structure of the NCBO BioPortal ontologies. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 7031, pp. 67-82). DOI: 10.1007/978-3-642-25073-6_5. Publication link: d84c4487-0718-4383-8d9a-c4a921ea0c6d
  15. Klinov, P., Parsia, B., Bjørner, N. (Ed.), & Sofronie-Stokkermans, V. (Ed.) (2011). A hybrid method for probabilistic satisfiability. In N. Bjørner, & V. Sofronie-Stokkermans (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 6803, pp. 354-368). Springer Verlag. DOI: 10.1007/978-3-642-22438-6_27. Publication link: e5e24e85-265d-49f8-9bee-47f8e9d03863
  16. Horridge, M., Bail, S., Parsia, B., & Sattler, U. (2011). The cognitive complexity of OWL justifications. In The Semantic Web-ISWC 2011. (pp. 241-256). Springer Berlin Heidelberg. . Publication link: e2d7db66-eb8e-4645-90dd-86d4eea79cf9
  17. Horridge, M., Bail, S., Parsia, B., & Sattler, U. (2011). The Cognitive Complexity of OWL Justifications. In host publication. Springer Verlag. . Publication link: f8e6c157-775d-4652-a225-cd75e71ce1a2
  18. Del Vescovo, C., Parsia, B., & Sattler, U. (2011). Topicality in logic-based ontologies. In Conceptual Structures for Discovering Knowledge. (pp. 187-200). Springer Berlin Heidelberg. . Publication link: e8dc9f6b-9053-4e8d-a691-ed6eb822a0c5
  19. Horridge, M., Parsia, B., & Sattler, U. (2011). The state of bio-medical ontologies. Bio-Ontologies 2011. . Publication link: e97c5bbe-8cc3-43ba-8f87-4532f99d45e2
  20. Opitz, J., Parsia, B., & Sattler, U. (2011). Evaluating semantically enriched information systems. In Semantic Technology and Information Retrieval (STAIR), 2011 International Conference on. (pp. 313-320). Publication link: 76c9c012-ab4a-42ce-a57e-8204cb96e6fa
  21. Gonçalves, R. S., Parsia, B., & Sattler, U. (2011). Analysing the evolution of the NCI thesaurus. In Proceedings - IEEE Symposium on Computer-Based Medical Systems|Proc. IEEE Symp. Comput.-Based Med. Syst.. (pp. 1-6). DOI: 10.1109/CBMS.2011.5999163. Publication link: 8afe5d9f-e82b-4bd0-9d68-22565e69a1cb
  22. Bail, S., Parsia, B., & Sattler, U. (2011). Extracting finite sets of entailments from OWL ontologies. Proceedings of the 24th international workshop on Description Logic, Barcelona, Spain. . Publication link: 899dfb57-b9f7-4625-911b-936b5b5ef69f
  23. Bail, S., Parsia, B., & Sattler, U. (2011). Extracting finite sets of entailments from OWL ontologies. In CEUR Workshop Proceedings|CEUR Workshop Proc.. (Vol. 745, pp. 422-432). Publication link: 96bf6843-9e3e-4cf6-b829-809086eadba1
  24. Del Vescovo, C., Gessler, D. D. G., Klinov, P., Parsia, B., Sattler, U., Schneider, T., & Winget, A. (2011). Decomposition and modular structure of BioPortal ontologies. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 7031, pp. 130-145). DOI: 10.1007/978-3-642-25073-6_9. Publication link: 6490d76e-e305-4f50-b6b3-6713b62132f0
  25. Del Vescovo, C., Gessler, D. D. G., Klinov, P., Parsia, B., Sattler, U., Schneider, T., & Winget, A. (2011). Decomposition and modular structure of bioportal ontologies. In The Semantic Web-ISWC 2011. (pp. 130-145). Springer Berlin Heidelberg. . Publication link: 05909061-3ddd-415a-966b-fc0adc09523d
  26. Klinov, P., & Parsia, B. (2011). Representing Sampling Distributions in P-SROIQ. In URSW. (pp. 39-50). Publication link: 1d9956d4-c8f9-4fb3-ab8d-6f7f4359b14d
  27. Del Vescovo, C., Parsia, B., Sattler, U., & Schneider, T. (2011). The Modular Structure of an Ontology: Atomic Decomposition and Module Count. In WoMO. (pp. 25-39). Publication link: 44d10504-201e-47de-8812-63d2d614a31c
  28. Gonçalves, R. S., Parsia, B., & Sattler, U. (2011). Facilitating the analysis of ontology differences. Proceedings of the joint workshop on knowledge evolution and ontology dynamics (EvoDyn). . Publication link: 447e07a6-1c05-4a37-aece-eb1939e57054
  29. Gonçalves, R. S., Parsia, B., & Sattler, U. (2011). Analysing multiple versions of an ontology: A study of the NCI Thesaurus. 24th International Workshop on Description Logics. . Publication link: 3181b6ca-1188-4020-8a20-525eef6d7aa3
  30. Del Vescovo, C., Parsia, B., & Sattler, U. (2011). Topicality in logic-based ontologies. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 6828, pp. 187-200). DOI: 10.1007/978-3-642-22688-5_14. Publication link: 30a26f7f-425a-499f-9037-e4a6330d8929
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