Publications

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2017

Article
  1. Berry, N., Lobban, A., Belousov, M., Emsley, R., Nenadic, G., & Bucci, S. (2017). #WhyWeTweetMH: Understanding why people use Twitter to discuss mental health problems. Journal of medical Internet research. . Publication link: e9b24400-68d4-4a8c-8b52-41bf458eb585
  2. da Silva, R. F., Filgueira, R., Pietri, I., Jiang, M., Sakellariou, R., & Deelman, E. (2017). A characterization of workflow management systems for extreme-scale applications. Future Generation Computer Systems. DOI: 10.1016/j.future.2017.02.026. Publication link: d9825e4c-5117-431b-ac71-da95747c5762
  3. Joshi, A., Youssofzadeh, V., Vemana, V., McGinnity, T. M., Prasad, G., & Wong-Lin, K. F. (2017). An integrated modelling framework for neural circuits with multiple neuromodulators. Journal of the Royal Society Interface, 14(126), [20160902]. DOI: 10.1098/rsif.2016.0902. Publication link: 293c7b52-1a28-4920-acf1-076687d1dd44
  4. Hancock, J. M., Game, A., Ponting, C. P., & Goble, C. A. (2017). An open and transparent process to select ELIXIR Node Services as implemented by ELIXIR-UK. F1000Research, 5, [2894]. DOI: 10.12688/f1000research.10473.2. Publication link: f0902b98-a3ee-4e84-a0f1-488d61ceebb0
  5. Birkett, M., Savory, C. N., Fioretti, A. N., Thompson, P., Muryn, C. A., Weerakkody, A. D., ... Veal, T. D. (2017). Atypically small temperature-dependence of the direct band gap in the metastable semiconductor copper nitride Cu3 N. Physical Review B - Condensed Matter and Materials Physics, 95(11), [115201]. DOI: 10.1103/PhysRevB.95.115201. Publication link: e766e68d-0e52-41a5-8e05-29355e29a3d7
  6. Glymenaki, M., Singh, G., Brass, A., Warhurst, G., Mcbain, A., Else, K., & Cruickshank, S. (2017). Compositional changes in the gut mucus microbiota precede the onset of colitis-induced inflammation. Inflammatory Bowel Diseases. . Publication link: 0f899f38-d9cc-4e09-a5a9-8e1b16148963
  7. Currin, A., Korovin, K., Ababi, M., Roper, K., Kell, D. B., Day, P. J., & King, R. D. (2017). Computing exponentially faster: Implementing a non-deterministic universal Turing machine using DNA. Journal of the Royal Society Interface, 14(128), [20160990]. DOI: 10.1098/rsif.2016.0990. Publication link: c739f402-9ded-4b34-9251-f9b8f72adbec
  8. Currin, A., Korovin, K., Ababi, M., Roper, K., Kell, D., Day, P., & King, R. (2017). Computing exponentially faster: Implementing a nondeterministic universal Turing machine using DNA. Journal of the Royal Society Interface. . Publication link: 0636cd7c-5954-4182-8759-f5b60b77ce81
  9. Sechidis, K., Sperrin, M., Petherick, E. S., Lujan, M., & Brown, G. (2017). Dealing with Under-reported Variables: An Information Theoretic Solution. International Journal of Approximate Reasoning. . Publication link: cc38e7b1-fbfc-4f40-a71b-0038d5709bbf
  10. Fu, X., Zeng, X., Luo, X. . R., Wang, D., Xu, D., & Fan, Q-L. (2017). Designing an Intelligent Decision Support System for Effective Negotiation Pricing: A Systematic and Learning Approach. Decision Support Systems. . Publication link: 564fa355-58d8-4804-94bf-90c1794327c0
  11. Barr, S., Hill, E., & Bayat, A. (2017). Development, Fabrication and Evaluation of a Novel Biomimetic Human Breast Tissue Derived Breast Implant Surface. Acta Biomaterialia, 49(2), 260. DOI: 10.1016/j.actbio.2016.11.052. Publication link: 3be7b49f-b762-41ac-a4a9-542d1e201c55
  12. Werner, S., Navaridas, J., & Luján, M. (2017). Efficient Sharing of Optical Resources in Low-Power Optical Networks-on-Chip. Journal of Optical Communications and Networking. . Publication link: 54131349-7055-4add-ac1b-e6054c6d9cba
  13. Bartocci, E., Falcone, Y., Bonakdarpour, B., Colombo, C., Decker, N., Havelund, K., ... Zhang, Y. (2017). First international Competition on Runtime Verification: rules, benchmarks, tools, and final results of CRV 2014. International Journal on Software Tools for Technology Transfer, 1-40. DOI: 10.1007/s10009-017-0454-5. Publication link: f0f4991b-8726-47b4-b9db-8744012171a5
  14. Patel, R., Belousov, M., Jani, M., Dasgupta, N., Winakor , C., Nenadic, G., & Dixon, W. (2017). Frequent discussion of insomnia and weight gain with glucocorticoid therapy: An analysis of Twitter posts. npj Digital Medicine. . Publication link: 0e5dad86-a322-416b-a32d-2f276a9517b0
  15. Jay, C., Haines, R., Vigo, M., Matentzoglu, N., Stevens, R., Boyle, J., ... Vega Hernandez, J. (2017). Identifying the challenges of code/theory translation: report from the Code/Theory 2017 workshop. Research Ideas and Outcomes, 3. DOI: 10.3897/rio.3.e13236. Publication link: 0f135d7f-75db-4803-a3d1-4fee3904a0de
  16. Finn, R. D., Attwood, T. K., Babbitt, P. C., Bateman, A., Bork, P., Bridge, A. J., ... Mitchell, A. L. (2017). InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Research, 45(D1), D190-D199. DOI: 10.1093/nar/gkw1107, 10.1093/nar/gkw1107. Publication link: 9f99b38d-cc9b-42f1-9855-8d6d6495fa02 | PubMed:27899635
  17. Dinsdale, G., Moore, T., O'Leary, N., Tresadern, P., Berks, M., Roberts, C., ... Herrick, A. L. (2017). Intra-and inter-observer reliability of nailfold videocapillaroscopy - A possible outcome measure for systemic sclerosis-related microangiopathy. Microvascular Research, 112, 1-6. DOI: 10.1016/j.mvr.2017.02.001. Publication link: a5a86850-2a51-42d1-8dd6-df8f09a26c4b | PubMed:28163035
  18. Milosevic, N., Dehghantanha, . A., & Choo, . K-K. R. (2017). Machine learning aided Android malware classification. Computers & Electrical Engineering: an international journal . DOI: 10.1016/j.compeleceng.2017.02.013. Publication link: b5a64961-b3e7-4cc4-ae1f-4dfdd64fbc62
  19. Millard, P., Smallbone, K., Mendes, P., & Pedrosa Mendes, P. (2017). Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli. PLoS Computational Biology, 13(2), [e1005396]. DOI: 10.1371/journal.pcbi.1005396. Publication link: 97ec71ac-e7ad-4f5c-9c43-5b35910cf65d
  20. Furber, S. (2017). Microprocessors: the engines of the digital age. Royal Society of London. Proceedings A. Mathematical, Physical and Engineering Sciences. DOI: 10.1098/rspa.2016.0893. Publication link: ffd88186-c6ad-4037-84c9-558a5020fbed
  21. Ostler, T. A., Barton, C., Thomson, T., & Hrkac, G. (2017). Modeling the thickness dependence of the magnetic phase transition temperature in thin FeRh films. Physical Review B - Condensed Matter and Materials Physics, 95(6), [064415]. DOI: 10.1103/PhysRevB.95.064415. Publication link: efb8bd30-0180-4c19-91db-af6f1290ded8
  22. Hayhurst, K., Pierce, M., Hickman, M., Seddon, T., Dunn, G., Keane, J., & Millar, T. (2017). Pathways through opiate use and offending: a systematic review. International Journal of Drug Policy, 39, 1-13. DOI: 10.1016/j.drugpo.2016.08.015. Publication link: f174ee87-3156-4fae-bace-aa844041433e
  23. Vigo, M., & Harper, S. (2017). Real-Time Detection of Navigation Problems on the World 'Wild' Web. International Journal of Human-Computer Studies. DOI: 10.1016/j.ijhcs.2016.12.002. Publication link: 9f7439f0-d1e4-4383-b15d-3fc070c5384d
  24. Alper, P., Belhajjame, K., & Goble, C. (2017). Static Analysis of Taverna Workflows To Predict Provenance Patterns. Future Generation Computer Systems. DOI: 10.1016/j.future.2017.01.004. Publication link: fd2833ab-287a-43ba-9c06-a89416d4e0ee
  25. Hao, Y., Mu, T., Hong, R., Wang, M., An, N., & Goulermas, J. Y. (2017). Stochastic Multi-view Hashing for Large-scale Near-duplicate Video Retrieval. IEEE Ttransactions on Multimedia, 19(1). DOI: 10.1109/TMM.2016.2610324. Publication link: 93f0b0d8-bb53-4705-ac95-f8b2f5114603
  26. Maricar, N., Parkes, M., Callaghan, M., Hutchinson, C., Gait, A., Hodgson, R., ... O'Neill, T. (2017). Structural Predictors of Response to Intra-Articular Steroid Injection in Symptomatic Knee Osteoarthritis. Arthritis Research and Therapy. . Publication link: 92fb7ce4-4a57-4621-a2c3-83fb674c51a2
  27. Barton, C., Ostler, T., Huskisson, D., Kinane, C. J., Haigh, S., Hrkac, G., & Thomson, T. (2017). Substrate Induced Strain Field in FeRh Epilayers Grown on Single Crystal MgO (001) Substrates. Scientific Reports, 7. DOI: 10.1038/srep44397. Publication link: 83680500-8e94-492f-8d9a-d6cbcf187b09
  28. Matentzoglu, N., Parsia, B., Gonçalves, R. S., Glimm, B., & Steigmiller, A. (2017). The OWL Reasoner Evaluation (ORE) 2015 Competition Report. Journal of Automated Reasoning. DOI: 10.1007/s10817-017-9406-8. Publication link: e2c1bb15-574d-48c9-af37-83ba7742bef3
  29. Wang, W., & Reani, M. (2017). The Rise of Mobile Computing for Group Decision Support Systems: A Comparative Evaluation of Mobile and Desktop. International Journal of Human Computer Studies, 104. DOI: 10.1016/j.ijhcs.2017.02.008. Publication link: 019704cd-928b-464e-954b-55e4ed29f3de
  30. Mueller, J., Jay, C., Harper, S., & Todd, C. (2017). The role of Web-based health information in help-seeking behaviour prior to a diagnosis of lung cancer: A mixed-methods study. Journal of medical Internet research. . Publication link: a3f47ade-e97a-4c2f-888e-c61162c5ddde
  31. Erickson, A., Stewart, I. A., Navaridas, J., & Kiasari, A. E. (2017). The stellar transformation: From interconnection networks to datacenter networks. Computer Networks, 113, 29-45. DOI: 10.1016/j.comnet.2016.12.001. Publication link: ad8b2379-2cfb-4519-b0bc-508483a50d83
  32. Gao, X., Mu, T., Goulermas, J. Y., & Wang, M. (2017). Topic driven multimodal similarity learning with multi-view voted convolutional features. Pattern Recognition. DOI: 10.1016/j.patcog.2017.02.035. Publication link: c3383370-d68f-4dcb-9fc4-732ec2e11251
  33. Bastos, P., Trindade, F., Ferreira, R., Arguello Casteleiro, M., Stevens, R., Klein, J., & Vitorino, R. (2017). Unveiling antimicrobial peptide–generating human proteases using PROTEASIX. Journal of Proteomics. DOI: 10.1016/j.jprot.2017.02.016. Publication link: 80b94f6d-8205-4a97-8842-ba82eb1fb2c5
  34. Mueller, J., Jay, C., Harper, S., Davies, A., Vega Hernandez, J., & Todd, C. (2017). Web-use for symptom appraisal for physical health conditions:: A systematic review. Journal of medical Internet research. . Publication link: 603eca23-17c3-4047-9f84-2cca55c485f0
Conference contribution
  1. Minciullo, L., Thomson, J., & Cootes, T. (2017). Combination of Lateral and PA View Radiographs to Study Development of Knee OA and Associated Pain. In Medical Imaging 2017: Computer-Aided Diagnosis. (Vol. 10134). (SPIE Proceedings). SPIE. DOI: 10.1117/12.2254295. Publication link: e62dee5f-8326-4e7d-8af2-190547758ae2
  2. Pavlidis, V., & Papistas, I. (2017). Contactless Inter-Tier Communication for Heterogeneous 3-D ICs. In International Symposium on Circuits and Systems.. Publication link: 881576f0-08f3-4abf-a23d-0d9f6f724a0f
  3. Pascual Saiz, J., Lant, J., Attwood, A., Concatto, C., Navaridas, J., Luján, M., & Goodacre, J. (2017). Designing an Exascale Interconnect using Multi-objective Optimization. In IEEE Congress on Evolutionary Computation 2017. Institute of Electrical and Electronics Engineers Inc.. . Publication link: 2419a3a9-93f6-43a0-ad2d-f4d61b1a281d
  4. Thompson, P., & Ananiadou, S. (2017). Extracting Gene-Disease Relations from Text to Support Biomarker Discovery. In Digital Health 2017: Global Public Health, Personalised Medicine, and Emergency Medicine in the Age of Big Data. ACM Digital Library. . Publication link: 190d5404-b136-4fbf-b6d5-179c0f858e1c
  5. Lu, K., Zhang, W., Wang, X., Luján, M., & Nisbet, A. (2017). Flexible Page-level Memory Access Monitoring Based on Virtualization Hardware. In Proceedings of the 13th ACM SIGPLAN/SIGOPS International Conference on Virtual Execution Environments. (pp. 201-213). (VEE '17). New York, NY, USA: ACM. DOI: 10.1145/3050748.3050751. Publication link: 26196f71-2791-4914-afa1-76770bbed8d3
  6. Kotselidis, C., Clarkson, J., Rodchenko, A., Nisbet, A., Mawer, J., & Luján, M. (2017). Heterogeneous Managed Runtime Systems: A Computer Vision Case Study. In Proceedings of the 13th ACM SIGPLAN/SIGOPS International Conference on Virtual Execution Environments. (pp. 74-82). (VEE '17). New York, NY, USA: ACM. DOI: 10.1145/3050748.3050764. Publication link: 278fb58e-c9b2-46b4-8c43-64ddd44b500b
  7. d'Antras, A., Gorgovan, C., Garside, J., Goodacre, J., & Luján, M. (2017). HyperMAMBO-X64: Using Virtualization to Support High-performance Transparent Binary Translation. In Proceedings of the 13th ACM SIGPLAN/SIGOPS International Conference on Virtual Execution Environments. (pp. 228-241). (VEE '17). New York, NY, USA: ACM. DOI: 10.1145/3050748.3050756. Publication link: 43546feb-5e08-4061-b3d9-f620397f3be0
  8. Ladenheim, S., Chen, Y-C., Mihajlovic, M., & Pavlidis, V. (2017). IC Thermal Analyzer for Versatile 3-D Structures Using Multigrid Preconditioned Krylov Methods. In 2016 International Conference On Computer Aided Design. IEEE. DOI: 10.1145/2966986.2967045. Publication link: 9d8ca177-b60c-47f7-b94f-5fc8cffa02ba
  9. Lesecq, S., Ouvry, L., Correvon, M., Dudnik, G., Barrett, J., McGibney, A., ... Mathewson, A. (2017). INSPEX: Integrated Smart Spatial Exploration System. In Proceedings Smart Systems Integration 2017.. Publication link: 7d60b051-e80a-4dcd-9455-fafea43a75d8
  10. Rodchenko, A., Kotselidis, C., Nisbet, A., Pop, A., & Luján, M. (2017). MaxSim: A Simulator Platform for Managed Applications. In IIEEE International Symposium on Performance Analysis of Systems and Software - ISPASS 2017.. Publication link: 6a73bee7-b528-4601-80b0-e7cde3ed6acb
  11. Gamlo, A., Zhang, N., & Bamasag, O. (2017). Mobile Cloud Computing: Security Analysis. In The 5th IEEE International Conference on Mobile Cloud Computing, Services, and Engineering (IEEE MobileCloud 2017) . IEEE. . Publication link: a9060ec2-a221-49ab-b68a-6e136e6bcc91
  12. Shi, P., & Chen, K. (2017). Online Level Generation in Super Mario Bros via Learning Constructive Primitives. In Proceedings of IEEE Computational Intelligence and Games Conference . IEEE Press. DOI: 10.1109/CIG.2016.7860397. Publication link: ecb7d55d-d48d-4f53-a72b-ddbadce0cdc4
Book
  1. Lau, K-K., & Di Cola, S. (2017). An Introduction to Component-based Software Development. World Scientific Publishing.. Publication link: 25e8beaa-850f-4b08-a55f-15bfd8da9624
Chapter
  1. Sen Bhattacharya, B., & Durrant, S. J. (2017). A neural mass computational framework to study synaptic mechanisms underlying alpha and theta rhythms. In P. Erdi, B. Sen Bhattacharya, & A. Cochran (Eds.), Computational Neurology and Psychiatry. [12] (Handbook of Bio-/Neuro-informatics). Springer Verlag. . Publication link: 2bf5558a-005b-441d-bf00-e7a5ae41149c
  2. Clarkson, J., Kotselidis, C., Brown, G., & Luján, M. (2017). Boosting Java Performance Using GPGPUs. In J. Knoop, W. Karl, M. Schulz, K. Inoue, & T. Pionteck (Eds.), Architecture of Computing Systems - ARCS 2017: 30th International Conference, Vienna, Austria, April 3--6, 2017, Proceedings. (pp. 59-70). Cham: Springer International Publishing AG. DOI: 10.1007/978-3-319-54999-6_5. Publication link: d1d2f71c-51e5-4277-8dbd-740cbd48d8bc
  3. Sen Bhattacharya, B., Cochran, A., & Erdi, P. (2017). Introduction (Chapter 1). In P. Erdi, B. Sen Bhattacharya, & A. Cochran (Eds.), Computational neurology and neuropsychiatry. [1] (Handbook of Bio-/Neuro-informatics). Springer Verlag. . Publication link: f58d7702-1f6d-4afa-97c7-55b67ff50c34
Poster
  1. Kalargaris, C., Chen, Y-C., & Pavlidis, V. (2017). STA Compatible Backend Design Flow for TSV-based 3-D ICs. Poster session presented at International Conference on Quality Electronic Design, Santa Clara, United States.. Publication link: 62bca76b-a8dc-4167-8ac5-23e4b0a7cc32
Paper
  1. Sato, M., Brockmeier, A., Kontonatsios, G., Mu, T., Goulermas, J., Tsujii, J., & Ananiadou, S. (2017). Distributed Document and Phrase Co-embeddings for Descriptive Clustering. 991-1001. Paper presented at European Chapter of the Association for Computational Linguistics, Valencia, Spain.. Publication link: d3cf79e1-2978-4789-b3b6-cd173d040458
  2. Gould, N., Mackaness, W., Bechhofer, S., Stevens, R., & Cooper, L. (2017). Personalised Information Systems in Multi-Modal Transportation Decision Making. Paper presented at Geographical Information Science Research UK, Manchester, United Kingdom.. Publication link: cbcc20e1-a028-43fe-bf07-99035d6dea4b
  3. Page, K., Bechhofer, S., Fazekas, G., Weigle, D., & Wilmering, T. (2017). Realising a Layered Digital Library: Exploration and Analysis of the Live Music Archive through Linked Data. Paper presented at ACM/IEEE-CS Joint Conference on Digital Libraries (JCDL) 2017, Toronto, Canada.. Publication link: b233d4c9-3622-4837-8d1f-d59323272b53
  4. Apaolaza, A., & Vigo, M. (2017). WevQuery: Testing Hypotheses about Web Interaction Patterns. Paper presented at ACM SIGCHI Symposium on Engineering Interactive Computing Systems, Lisbon, Portugal.. Publication link: efa58575-8b8b-4361-a71a-b17e97c7d04f
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