Seminars

Our seminar series is free and available for anyone to attend. Unless otherwise stated, seminars take place on Wednesday afternoons at 2pm in the Kilburn Building during teaching season.

If you wish to propose a seminar speaker please contact Antoniu Pop.

 

Biological database quality through the lens of the scientific literature

  • Speaker:   Prof  Karin Verspoor  (The University of Melbourne)
  • Host:   Sophia Ananiadou
  • 27th April 2017 at 14:00 in Kilburn L.T 1.5
Abstract
Biological databases, such as gene and protein-related databases, are vast resources that play a critical role in day-to-day interpretation and analysis in biological research. Due to their size, however, it is very difficult to ensure that errors and inconsistencies do not creep in. In this talk, I will describe a series of studies that consider errors in biological sequence databases, focusing on record duplication and erroneous records. I will introduce methods based on both machine learning and information retrieval for identifying such records. The methods draw on internal database attributes, as well as consideration of external record-associated information specifically, the scientific literature associated with the biological entities represented in the records to enable effective error-checking of biological database records. The research points to the value of the literature as a resource for biological database quality control.
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